Mutagenetix > Incidental Mutation

Incidental Mutation 'R2117:Pank1'

231145

Institutional Source

Beutler Lab

Gene Symbol

Pank1

Ensembl Gene

ENSMUSG00000033610

Gene Name

pantothenate kinase 1

Synonyms

4632412I06Rik, 5430426F23Rik, Pank1b, Pank1a, Pank1

MMRRC Submission

040121-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.089) question?

Stock #

R2117 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

34784340-34856855 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 34818486 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Phenylalanine at position 18 (I18F)

Ref Sequence

ENSEMBL: ENSMUSP00000108079 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000036584] [ENSMUST00000112460]

AlphaFold

Q8K4K6

Predicted Effect

probably damaging
Transcript: ENSMUST00000036584
AA Change: I193F

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000043562
Gene: ENSMUSG00000033610
AA Change: I193F

Domain	Start	End	E-Value	Type
low complexity region	16	29	N/A	INTRINSIC
low complexity region	42	53	N/A	INTRINSIC
low complexity region	135	147	N/A	INTRINSIC
Pfam:Fumble	188	540	1.6e-121	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000112460
AA Change: I18F

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000108079
Gene: ENSMUSG00000033610
AA Change: I18F

Domain	Start	End	E-Value	Type
Pfam:Fumble	13	365	3.8e-122	PFAM

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 97.2%
20x: 95.0%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the pantothenate kinase family. Pantothenate kinases are key regulatory enzymes in the biosynthesis of coenzyme A (CoA). The encoded protein catalyzes the first and rate-limiting enzymatic reaction in CoA biosynthesis and is regulated by CoA through feedback inhibition. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. This gene and an intronic miRNA on the same strand are co-regulated by the tumor suppressor p53 (see PMID 20833636). [provided by RefSeq, Apr 2011]
PHENOTYPE: Homozygous mutant has increased body weight, polyphagia, decreased serum triglyceride and glucose levels after fasting. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 101 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adgrv1	A	T	13: 81,640,656 (GRCm39)	C3357S	probably benign	Het
Ago1	T	A	4: 126,357,650 (GRCm39)		probably null	Het
Akap10	A	T	11: 61,781,129 (GRCm39)	D562E	possibly damaging	Het
Akr1b7	G	A	6: 34,395,929 (GRCm39)	A144T	possibly damaging	Het
Ankle1	A	G	8: 71,860,562 (GRCm39)	T340A	probably benign	Het
Arf5	C	T	6: 28,424,783 (GRCm39)	Q71*	probably null	Het
Arl15	C	T	13: 114,104,196 (GRCm39)	S111F	probably damaging	Het
Asph	G	A	4: 9,517,671 (GRCm39)	Q468*	probably null	Het
Bcam	G	T	7: 19,492,352 (GRCm39)	A581E	possibly damaging	Het
Blvra	G	T	2: 126,927,989 (GRCm39)	E80*	probably null	Het
Ccr6	T	C	17: 8,474,914 (GRCm39)	F40L	possibly damaging	Het
Cfap161	A	T	7: 83,425,184 (GRCm39)	N302K	possibly damaging	Het
Ckmt2	T	A	13: 92,003,964 (GRCm39)	I345F	probably benign	Het
Cpsf6	A	G	10: 117,202,025 (GRCm39)		probably benign	Het
Ctnna1	A	G	18: 35,285,678 (GRCm39)	N8S	possibly damaging	Het
Cyp2d11	A	G	15: 82,275,954 (GRCm39)	L209P	probably damaging	Het
Dab2	T	C	15: 6,465,096 (GRCm39)	V628A	probably damaging	Het
Dcstamp	C	T	15: 39,618,571 (GRCm39)	Q327*	probably null	Het
Defb38	A	T	8: 19,073,483 (GRCm39)	Y63*	probably null	Het
Dlg5	A	T	14: 24,227,826 (GRCm39)	L365*	probably null	Het
Dnai7	C	T	6: 145,150,967 (GRCm39)		probably null	Het
Dnmt3l	C	A	10: 77,899,130 (GRCm39)	L110I	probably damaging	Het
Exoc3l2	G	T	7: 19,228,907 (GRCm39)	L108F	possibly damaging	Het
Exoc4	T	A	6: 33,324,760 (GRCm39)	N351K	possibly damaging	Het
Fam83h	C	A	15: 75,876,582 (GRCm39)	E252*	probably null	Het
Fancm	A	G	12: 65,123,948 (GRCm39)	D202G	probably damaging	Het
Fat1	T	A	8: 45,490,500 (GRCm39)	V3804E	probably benign	Het
Fbxw28	T	C	9: 109,159,985 (GRCm39)	T190A	probably benign	Het
Fer1l4	T	C	2: 155,881,038 (GRCm39)	T843A	probably benign	Het
Fnip1	A	T	11: 54,391,450 (GRCm39)	H461L	probably damaging	Het
Gcn1	A	T	5: 115,736,884 (GRCm39)	M1276L	probably benign	Het
Gemin4	A	G	11: 76,101,827 (GRCm39)	V978A	possibly damaging	Het
Gm7247	A	T	14: 51,602,792 (GRCm39)	I43F	probably damaging	Het
Gm9978	C	T	10: 78,322,731 (GRCm39)		noncoding transcript	Het
Gpr4	T	C	7: 18,957,070 (GRCm39)	S331P	probably damaging	Het
Hspa1a	T	A	17: 35,189,455 (GRCm39)	N483Y	probably damaging	Het
Ift74	A	G	4: 94,515,496 (GRCm39)	T138A	probably benign	Het
Ints14	T	G	9: 64,887,077 (GRCm39)	L336R	probably damaging	Het
Irak1	G	T	X: 73,066,218 (GRCm39)	P197Q	possibly damaging	Het
Kif4	A	G	X: 99,709,323 (GRCm39)	S315G	probably benign	Het
L3mbtl1	T	A	2: 162,801,990 (GRCm39)		probably null	Het
Lamb3	A	G	1: 193,016,489 (GRCm39)	R657G	probably benign	Het
Ldc1	C	A	4: 130,109,156 (GRCm39)	V295L	possibly damaging	Het
Lrp2	A	C	2: 69,313,729 (GRCm39)	V2334G	probably benign	Het
Lrwd1	T	A	5: 136,159,332 (GRCm39)	Y431F	probably damaging	Het
Map3k21	A	T	8: 126,650,781 (GRCm39)	H261L	probably benign	Het
Meis1	G	T	11: 18,831,679 (GRCm39)	P453Q	probably damaging	Het
Mettl16	G	T	11: 74,693,755 (GRCm39)	M255I	probably benign	Het
Mllt10	A	G	2: 18,167,380 (GRCm39)	N435S	probably benign	Het
Mta2	T	C	19: 8,920,880 (GRCm39)	I27T	probably damaging	Het
Nav2	A	G	7: 49,114,328 (GRCm39)	I771V	probably benign	Het
Nisch	A	T	14: 30,899,242 (GRCm39)		probably benign	Het
Npc1	G	A	18: 12,329,613 (GRCm39)	P990L	probably damaging	Het
Nrxn1	A	T	17: 91,011,705 (GRCm39)	I308K	probably damaging	Het
Or13l2	C	A	3: 97,317,765 (GRCm39)	C244F	probably damaging	Het
Or1ad6	A	T	11: 50,860,147 (GRCm39)	I101F	probably damaging	Het
Or5h17	T	C	16: 58,820,783 (GRCm39)	L245P	possibly damaging	Het
Otogl	T	C	10: 107,694,779 (GRCm39)	D823G	probably benign	Het
P2rx7	A	G	5: 122,819,329 (GRCm39)	T584A	probably benign	Het
Pals1	T	C	12: 78,856,696 (GRCm39)	F180L	possibly damaging	Het
Pgap3	A	G	11: 98,281,933 (GRCm39)	L126P	probably damaging	Het
Pgap6	C	T	17: 26,336,858 (GRCm39)	L259F	possibly damaging	Het
Phka1	C	T	X: 101,653,807 (GRCm39)	R290H	probably damaging	Het
Pkd2	G	A	5: 104,631,042 (GRCm39)	E489K	probably damaging	Het
Prdm16	T	A	4: 154,432,382 (GRCm39)	S296C	probably null	Het
Prex2	T	A	1: 11,256,937 (GRCm39)	N1216K	probably damaging	Het
Prmt7	A	G	8: 106,953,930 (GRCm39)	T124A	probably damaging	Het
Ptpra	G	T	2: 130,381,655 (GRCm39)	R372L	probably damaging	Het
Ptpro	T	A	6: 137,420,592 (GRCm39)	V1007D	probably damaging	Het
Rap2b	G	T	3: 61,272,512 (GRCm39)	G12V	probably damaging	Het
Rapgef5	T	A	12: 117,677,799 (GRCm39)		probably null	Het
Rassf4	A	G	6: 116,622,088 (GRCm39)	F168S	possibly damaging	Het
Rtf1	T	A	2: 119,535,999 (GRCm39)	H184Q	probably benign	Het
Sacs	A	G	14: 61,451,220 (GRCm39)	K4422R	probably benign	Het
Sec11c	A	T	18: 65,933,720 (GRCm39)	T9S	probably benign	Het
Sema3d	C	T	5: 12,613,240 (GRCm39)	T439I	probably benign	Het
Sephs1	A	G	2: 4,904,351 (GRCm39)	N243S	probably benign	Het
Setd2	TTGGGA	T	9: 110,433,212 (GRCm39)		probably null	Het
Setx	A	G	2: 29,020,313 (GRCm39)	D100G	probably benign	Het
Slc22a7	C	A	17: 46,744,898 (GRCm39)	V383L	possibly damaging	Het
Slc25a40	T	C	5: 8,480,417 (GRCm39)	C56R	probably damaging	Het
Stk38l	T	A	6: 146,670,344 (GRCm39)	L229I	probably damaging	Het
Sult2a5	T	C	7: 13,359,359 (GRCm39)	S112P	probably damaging	Het
Syt4	A	G	18: 31,573,520 (GRCm39)	Y332H	probably damaging	Het
Tcof1	T	C	18: 60,965,857 (GRCm39)	E415G	possibly damaging	Het
Tenm2	A	G	11: 35,915,681 (GRCm39)	L1951P	probably damaging	Het
Tlr9	A	G	9: 106,102,536 (GRCm39)	N609S	probably damaging	Het
Tmem120a	A	T	5: 135,764,977 (GRCm39)	S266T	possibly damaging	Het
Tmem132b	A	G	5: 125,699,615 (GRCm39)	E92G	probably damaging	Het
Tnfrsf18	T	A	4: 156,112,973 (GRCm39)	V196E	probably damaging	Het
Trpc1	A	T	9: 95,599,637 (GRCm39)	L474H	probably damaging	Het
Trpm6	T	C	19: 18,807,316 (GRCm39)	V1020A	probably damaging	Het
Usp20	T	A	2: 30,906,317 (GRCm39)	C562S	probably damaging	Het
Usp47	T	A	7: 111,666,443 (GRCm39)		probably null	Het
Vgll1	A	C	X: 56,137,790 (GRCm39)	K53T	probably damaging	Het
Vmn1r26	T	C	6: 57,985,335 (GRCm39)	N285D	possibly damaging	Het
Zfp445	T	A	9: 122,682,502 (GRCm39)	K480*	probably null	Het
Zfp786	A	G	6: 47,803,931 (GRCm39)	V37A	probably damaging	Het
Zfp821	A	G	8: 110,447,851 (GRCm39)	E64G	probably damaging	Het
Zfp994	T	A	17: 22,419,962 (GRCm39)	D329V	probably damaging	Het
Zkscan8	T	C	13: 21,704,488 (GRCm39)	S484G	probably damaging	Het

Other mutations in Pank1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01688:Pank1	APN	19	34,818,252 (GRCm39)	missense	probably damaging	1.00
IGL02266:Pank1	APN	19	34,791,086 (GRCm39)	splice site	probably benign
IGL02814:Pank1	APN	19	34,818,255 (GRCm39)	missense	probably damaging	1.00
IGL03029:Pank1	APN	19	34,798,535 (GRCm39)	missense	probably damaging	0.96
snowleopard	UTSW	19	34,789,786 (GRCm39)	missense	probably damaging	1.00
PIT4402001:Pank1	UTSW	19	34,818,366 (GRCm39)	missense	probably damaging	1.00
R0388:Pank1	UTSW	19	34,799,106 (GRCm39)	splice site	probably benign
R1254:Pank1	UTSW	19	34,818,260 (GRCm39)	missense	probably benign	0.16
R1820:Pank1	UTSW	19	34,855,084 (GRCm39)	critical splice donor site	probably null
R1928:Pank1	UTSW	19	34,856,281 (GRCm39)	missense	probably benign
R2141:Pank1	UTSW	19	34,856,380 (GRCm39)	missense	possibly damaging	0.91
R2147:Pank1	UTSW	19	34,804,754 (GRCm39)	missense	probably benign	0.12
R2226:Pank1	UTSW	19	34,804,763 (GRCm39)	missense	probably damaging	1.00
R4363:Pank1	UTSW	19	34,804,532 (GRCm39)	missense	probably damaging	1.00
R4376:Pank1	UTSW	19	34,855,104 (GRCm39)	missense	probably benign
R5081:Pank1	UTSW	19	34,856,316 (GRCm39)	missense	probably benign
R5172:Pank1	UTSW	19	34,818,202 (GRCm39)	nonsense	probably null
R6706:Pank1	UTSW	19	34,789,786 (GRCm39)	missense	probably damaging	1.00
R6811:Pank1	UTSW	19	34,818,422 (GRCm39)	missense	probably benign	0.37
R7637:Pank1	UTSW	19	34,799,388 (GRCm39)	splice site	probably null
R7957:Pank1	UTSW	19	34,791,096 (GRCm39)	missense	probably damaging	1.00
R8477:Pank1	UTSW	19	34,856,055 (GRCm39)	missense	probably benign
R8725:Pank1	UTSW	19	34,855,989 (GRCm39)	missense	possibly damaging	0.57
R8893:Pank1	UTSW	19	34,804,903 (GRCm39)	intron	probably benign
R9193:Pank1	UTSW	19	34,804,634 (GRCm39)	missense	possibly damaging	0.53
R9235:Pank1	UTSW	19	34,856,197 (GRCm39)	missense	probably benign	0.22
R9664:Pank1	UTSW	19	34,799,194 (GRCm39)	missense	probably damaging	0.97

Predicted Primers

PCR Primer
(F):5'- TGAAGTGCAGGTTCCCTTTG -3'
(R):5'- GAATCCTGCACTGGCTCACTTC -3'

Sequencing Primer
(F):5'- TTTGCGCCCACACATGG -3'
(R):5'- CATTCTGAGTGCCTGTGAACAGC -3'

Posted On

2014-09-18