Mutagenetix > Incidental Mutation

Incidental Mutation 'R2118:Gimap4'

231185

Institutional Source

Beutler Lab

Gene Symbol

Gimap4

Ensembl Gene

ENSMUSG00000054435

Gene Name

GTPase, IMAP family member 4

Synonyms

Ian1, E430007K16Rik

MMRRC Submission

040122-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.052) question?

Stock #

R2118 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

48661483-48668994 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 48667905 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Phenylalanine at position 92 (C92F)

Ref Sequence

ENSEMBL: ENSMUSP00000112530 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000067506] [ENSMUST00000090070] [ENSMUST00000118802] [ENSMUST00000119575] [ENSMUST00000121957] [ENSMUST00000156770]

AlphaFold

Q99JY3

Predicted Effect

probably benign
Transcript: ENSMUST00000067506

SMART Domains

Protein: ENSMUSP00000068398
Gene: ENSMUSG00000054435

Domain	Start	End	E-Value	Type
Pfam:AIG1	31	218	4.2e-72	PFAM
Pfam:MMR_HSR1	32	186	2.6e-10	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000090070
AA Change: C220F

PolyPhen 2 Score 0.008 (Sensitivity: 0.96; Specificity: 0.76)

SMART Domains

Protein: ENSMUSP00000087524
Gene: ENSMUSG00000054435
AA Change: C220F

Domain	Start	End	E-Value	Type
Pfam:AIG1	31	242	1.5e-80	PFAM
Pfam:MMR_HSR1	32	170	1.6e-10	PFAM
low complexity region	265	282	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000118802
AA Change: C92F

PolyPhen 2 Score 0.243 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000112530
Gene: ENSMUSG00000054435
AA Change: C92F

Domain	Start	End	E-Value	Type
Pfam:AIG1	31	53	1.6e-7	PFAM
Pfam:AIG1	48	114	6.4e-17	PFAM
low complexity region	137	154	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000119575

SMART Domains

Protein: ENSMUSP00000113989
Gene: ENSMUSG00000054435

Domain	Start	End	E-Value	Type
SCOP:d1zin_1	31	50	2e-4	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000121957

SMART Domains

Protein: ENSMUSP00000113016
Gene: ENSMUSG00000054435

Domain	Start	End	E-Value	Type
Pfam:AIG1	31	55	4.3e-8	PFAM
Pfam:AIG1	48	89	1.5e-10	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000156770

SMART Domains

Protein: ENSMUSP00000122070
Gene: ENSMUSG00000054435

Domain	Start	End	E-Value	Type
Pfam:AIG1	31	69	6.7e-17	PFAM

Meta Mutation Damage Score

0.2081

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.4%
20x: 95.6%

Validation Efficiency

100% (90/90)

MGI Phenotype

FUNCTION: This gene encodes a protein belonging to the GTP-binding superfamily and to the immuno-associated nucleotide (IAN) subfamily of nucleotide-binding proteins. This gene exists within a cluster of other related genes located on mouse chromosome 6. This family member encodes a lymphoid signaling protein that functions to accelerate programmed T-cell death, which appears to correlate with the phosphorylation status of the protein. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2011]
PHENOTYPE: Mice homozygous for a knock-out allele show no detectable alterations in T-cell development, selection and activation; however, mutant T cells exhibit a delay in the execution of programmed cell death induced by intrinsic stimuli downstream of caspase-3 activation and phosphatidylserine exposure. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 87 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700020L24Rik	T	C	11: 83,331,190 (GRCm39)	S31P	possibly damaging	Het
4933430I17Rik	T	A	4: 62,457,109 (GRCm39)	L143M	possibly damaging	Het
Abca13	T	C	11: 9,259,013 (GRCm39)		probably benign	Het
Abcg5	T	A	17: 84,978,575 (GRCm39)	E294D	probably benign	Het
Abi3bp	T	C	16: 56,298,227 (GRCm39)		probably benign	Het
Adamts8	T	C	9: 30,854,359 (GRCm39)	F76S	probably damaging	Het
Agpat3	T	C	10: 78,113,918 (GRCm39)	R257G	probably damaging	Het
Ahctf1	C	A	1: 179,597,017 (GRCm39)	R43L	probably damaging	Het
AI593442	T	C	9: 52,588,993 (GRCm39)	T195A	probably benign	Het
Aipl1	A	T	11: 71,920,195 (GRCm39)	L291Q	possibly damaging	Het
Ambn	T	A	5: 88,608,617 (GRCm39)		probably benign	Het
Arap2	G	A	5: 62,864,028 (GRCm39)	T532I	probably damaging	Het
Arg1	T	C	10: 24,796,621 (GRCm39)	N69D	possibly damaging	Het
Arhgef10	A	G	8: 14,984,820 (GRCm39)	D200G	probably damaging	Het
Arhgef38	T	C	3: 132,866,514 (GRCm39)	K208E	probably benign	Het
Asb4	A	T	6: 5,390,687 (GRCm39)	T27S	probably benign	Het
Ash1l	C	G	3: 88,892,602 (GRCm39)	Q1494E	possibly damaging	Het
Car12	T	C	9: 66,621,174 (GRCm39)	V15A	probably benign	Het
Cdc20b	A	G	13: 113,215,232 (GRCm39)	I267V	probably benign	Het
Cdh1	A	G	8: 107,390,842 (GRCm39)	I653V	probably benign	Het
Cenpe	T	A	3: 134,952,645 (GRCm39)	M1445K	possibly damaging	Het
Cfap43	T	C	19: 47,758,877 (GRCm39)	E932G	probably damaging	Het
Cfhr1	G	C	1: 139,478,642 (GRCm39)	Q243E	probably benign	Het
Cnih2	C	A	19: 5,148,276 (GRCm39)	A6S	possibly damaging	Het
Cntnap1	G	T	11: 101,079,483 (GRCm39)	M1240I	probably benign	Het
Cntrl	T	C	2: 35,051,977 (GRCm39)	S1050P	probably benign	Het
Cyp2a12	A	G	7: 26,736,071 (GRCm39)	*493W	probably null	Het
Dbx2	A	C	15: 95,522,681 (GRCm39)	L342R	probably damaging	Het
Dmd	G	C	X: 83,356,089 (GRCm39)	A2257P	probably benign	Het
Dnajb2	T	C	1: 75,214,121 (GRCm39)	W30R	probably damaging	Het
Ecel1	A	G	1: 87,075,997 (GRCm39)	S727P	probably damaging	Het
Ednrb	T	A	14: 104,059,204 (GRCm39)	D274V	probably benign	Het
Fam78b	G	A	1: 166,906,278 (GRCm39)	V146M	probably damaging	Het
Fancd2	A	G	6: 113,537,035 (GRCm39)		probably benign	Het
Fbxw14	T	C	9: 109,103,692 (GRCm39)		probably benign	Het
Gm10033	A	C	8: 69,824,942 (GRCm39)		noncoding transcript	Het
Gm5828	A	G	1: 16,840,199 (GRCm39)		noncoding transcript	Het
Gnpat	T	C	8: 125,603,680 (GRCm39)	V186A	probably damaging	Het
Gnptab	T	C	10: 88,272,260 (GRCm39)	S967P	probably benign	Het
Ikbkb	T	C	8: 23,157,233 (GRCm39)		probably benign	Het
Il1rap	A	T	16: 26,529,315 (GRCm39)	H379L	probably damaging	Het
Ints12	T	C	3: 132,814,921 (GRCm39)	V376A	probably damaging	Het
Kalrn	C	T	16: 34,152,600 (GRCm39)	S309N	possibly damaging	Het
Kel	T	A	6: 41,666,234 (GRCm39)	I471L	probably benign	Het
Klhl25	T	C	7: 75,516,480 (GRCm39)	V462A	probably damaging	Het
Ksr1	A	T	11: 78,936,019 (GRCm39)	M77K	probably benign	Het
Leo1	T	A	9: 75,353,094 (GRCm39)	N212K	probably damaging	Het
Ltbp1	T	A	17: 75,617,154 (GRCm39)	V1031E	possibly damaging	Het
Ltbr	A	G	6: 125,286,440 (GRCm39)	S249P	probably benign	Het
Mast4	A	G	13: 102,890,713 (GRCm39)	V855A	probably damaging	Het
Mdga2	T	A	12: 66,915,526 (GRCm39)	E43V	probably damaging	Het
Mmaa	A	T	8: 79,994,588 (GRCm39)	L406*	probably null	Het
Mtcl2	T	C	2: 156,875,245 (GRCm39)	E835G	probably damaging	Het
Nlrp12	A	T	7: 3,290,079 (GRCm39)	N144K	probably damaging	Het
Nlrp6	T	C	7: 140,506,357 (GRCm39)	V766A	probably benign	Het
Or4f61	C	A	2: 111,922,675 (GRCm39)	V124L	probably benign	Het
Or5h18	A	G	16: 58,848,178 (GRCm39)	F31L	possibly damaging	Het
Pabpc4l	T	C	3: 46,401,276 (GRCm39)	T123A	probably benign	Het
Pappa2	T	C	1: 158,684,836 (GRCm39)	T768A	probably damaging	Het
Pde6d	A	G	1: 86,473,524 (GRCm39)	F91L	probably benign	Het
Ppp1r13l	A	G	7: 19,105,346 (GRCm39)	M373V	possibly damaging	Het
Prss37	G	A	6: 40,492,294 (GRCm39)	R186*	probably null	Het
Psg16	C	A	7: 16,824,548 (GRCm39)	H111N	probably benign	Het
Psg20	T	A	7: 18,414,947 (GRCm39)	Y316F	probably benign	Het
Psmd1	T	A	1: 86,006,422 (GRCm39)	S263T	possibly damaging	Het
Rai14	A	G	15: 10,575,252 (GRCm39)	F569L	probably benign	Het
Rbpms2	T	A	9: 65,558,229 (GRCm39)	D116E	probably damaging	Het
Rgs20	A	G	1: 4,987,113 (GRCm39)		probably benign	Het
Rnf114	T	C	2: 167,352,803 (GRCm39)	L101P	probably damaging	Het
Rnf168	T	G	16: 32,097,036 (GRCm39)	L37R	probably damaging	Het
Rpe	T	C	1: 66,754,387 (GRCm39)	M153T	probably damaging	Het
Sap18	T	A	14: 58,036,011 (GRCm39)	S66T	probably damaging	Het
Slc2a13	A	G	15: 91,400,679 (GRCm39)	V181A	probably damaging	Het
Spag17	A	G	3: 99,956,556 (GRCm39)	E884G	possibly damaging	Het
Sycn	T	C	7: 28,240,713 (GRCm39)	S127P	probably damaging	Het
Tas2r106	A	T	6: 131,655,317 (GRCm39)	L178H	probably damaging	Het
Tas2r117	T	A	6: 132,780,129 (GRCm39)	I89K	probably damaging	Het
Tep1	C	A	14: 51,093,029 (GRCm39)		probably null	Het
Tex14	T	C	11: 87,410,569 (GRCm39)		probably benign	Het
Tll1	T	C	8: 64,538,591 (GRCm39)	E351G	probably benign	Het
Tmem44	T	A	16: 30,366,262 (GRCm39)	K55*	probably null	Het
Trak1	T	A	9: 121,302,063 (GRCm39)	*940R	probably null	Het
Vmn1r200	C	T	13: 22,579,353 (GRCm39)	T43I	probably damaging	Het
Wars2	T	C	3: 99,123,883 (GRCm39)	V248A	probably benign	Het
Wfdc6b	C	T	2: 164,459,363 (GRCm39)	R142C	probably benign	Het
Zfp729a	A	T	13: 67,769,613 (GRCm39)		probably null	Het
Zfp759	C	A	13: 67,287,578 (GRCm39)		probably benign	Het

Other mutations in Gimap4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00980:Gimap4	APN	6	48,667,872 (GRCm39)	missense	probably damaging	1.00
IGL01917:Gimap4	APN	6	48,667,854 (GRCm39)	missense	probably benign	0.02
IGL02302:Gimap4	APN	6	48,667,347 (GRCm39)	missense	probably damaging	1.00
IGL02679:Gimap4	APN	6	48,667,429 (GRCm39)	nonsense	probably null
R1466:Gimap4	UTSW	6	48,668,216 (GRCm39)	missense	probably benign	0.17
R1466:Gimap4	UTSW	6	48,668,216 (GRCm39)	missense	probably benign	0.17
R1584:Gimap4	UTSW	6	48,668,216 (GRCm39)	missense	probably benign	0.17
R2079:Gimap4	UTSW	6	48,667,881 (GRCm39)	missense	possibly damaging	0.46
R2566:Gimap4	UTSW	6	48,667,799 (GRCm39)	missense	probably damaging	1.00
R4279:Gimap4	UTSW	6	48,667,511 (GRCm39)	missense	probably benign	0.22
R5592:Gimap4	UTSW	6	48,668,092 (GRCm39)	missense	probably damaging	0.99
R5597:Gimap4	UTSW	6	48,667,698 (GRCm39)	missense	probably damaging	1.00
R6162:Gimap4	UTSW	6	48,667,655 (GRCm39)	missense	probably damaging	0.97
R6354:Gimap4	UTSW	6	48,663,814 (GRCm39)	missense	possibly damaging	0.53
R6658:Gimap4	UTSW	6	48,668,338 (GRCm39)	missense	possibly damaging	0.65
R8028:Gimap4	UTSW	6	48,667,684 (GRCm39)	missense	probably damaging	0.98
R8349:Gimap4	UTSW	6	48,667,694 (GRCm39)	missense	probably damaging	1.00
R8449:Gimap4	UTSW	6	48,667,694 (GRCm39)	missense	probably damaging	1.00
R8993:Gimap4	UTSW	6	48,667,539 (GRCm39)	missense	probably damaging	1.00
R9112:Gimap4	UTSW	6	48,667,629 (GRCm39)	missense	probably benign	0.00
R9366:Gimap4	UTSW	6	48,668,037 (GRCm39)	missense	probably benign
R9367:Gimap4	UTSW	6	48,667,746 (GRCm39)	missense	probably damaging	1.00
R9477:Gimap4	UTSW	6	48,667,314 (GRCm39)	missense	probably benign	0.01
X0050:Gimap4	UTSW	6	48,667,734 (GRCm39)	missense	possibly damaging	0.91

Predicted Primers

PCR Primer
(F):5'- CTTGCTCACCAGGAAGGATG -3'
(R):5'- AAAGATAGCCTCCCTCTCCTTG -3'

Sequencing Primer
(F):5'- TTGCTCACCAGGAAGGATGACTTAG -3'
(R):5'- AAGATAGCCTCCCTCTCCTTGAATTC -3'

Posted On

2014-09-18