Mutagenetix > Incidental Mutation

Incidental Mutation 'R2147:Chpf2'

233900

Institutional Source

Beutler Lab

Gene Symbol

Chpf2

Ensembl Gene

ENSMUSG00000038181

Gene Name

chondroitin polymerizing factor 2

Synonyms

2010209O12Rik

MMRRC Submission

040150-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.096) question?

Stock #

R2147 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

24791739-24799554 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 24797033 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Phenylalanine to Isoleucine at position 660 (F660I)

Ref Sequence

ENSEMBL: ENSMUSP00000112804 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030791] [ENSMUST00000088295] [ENSMUST00000121863] [ENSMUST00000195943] [ENSMUST00000197318]

AlphaFold

Q3UU43

Predicted Effect

probably benign
Transcript: ENSMUST00000030791

SMART Domains

Protein: ENSMUSP00000030791
Gene: ENSMUSG00000028949

Domain	Start	End	E-Value	Type
low complexity region	40	55	N/A	INTRINSIC
low complexity region	72	89	N/A	INTRINSIC
low complexity region	93	102	N/A	INTRINSIC
Blast:KISc	103	239	5e-41	BLAST
SWIB	259	338	3.6e-29	SMART
Blast:MYSc	420	466	1e-11	BLAST

Predicted Effect

probably damaging
Transcript: ENSMUST00000088295
AA Change: F660I

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000085633
Gene: ENSMUSG00000038181
AA Change: F660I

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
Pfam:Fringe	143	298	3.2e-11	PFAM
Pfam:CHGN	242	755	1.7e-144	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000102432

Predicted Effect

probably damaging
Transcript: ENSMUST00000121863
AA Change: F660I

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000112804
Gene: ENSMUSG00000038181
AA Change: F660I

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
Pfam:Fringe	143	298	3.2e-11	PFAM
Pfam:CHGN	242	755	3e-176	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000140744

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000143501

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000144518

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145565

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000147857

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000144995

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000197566

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000197933

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000198521

Predicted Effect

probably benign
Transcript: ENSMUST00000195943

SMART Domains

Protein: ENSMUSP00000143437
Gene: ENSMUSG00000028949

Domain	Start	End	E-Value	Type
low complexity region	11	26	N/A	INTRINSIC
low complexity region	43	60	N/A	INTRINSIC
low complexity region	64	73	N/A	INTRINSIC
Blast:KISc	74	210	2e-41	BLAST
SWIB	230	309	2.3e-31	SMART
Blast:MYSc	391	437	8e-12	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000197318

SMART Domains

Protein: ENSMUSP00000143185
Gene: ENSMUSG00000038181

Domain	Start	End	E-Value	Type
Pfam:CHGN	1	74	7.5e-22	PFAM

Coding Region Coverage

1x: 99.2%
3x: 98.7%
10x: 97.5%
20x: 95.7%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 76 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930523C07Rik	T	A	1: 159,903,003 (GRCm39)	M91K	probably benign	Het
Abr	T	C	11: 76,346,474 (GRCm39)	R437G	probably damaging	Het
Acaca	T	G	11: 84,167,362 (GRCm39)	D1045E	probably benign	Het
Adam23	A	T	1: 63,573,521 (GRCm39)		probably null	Het
Adam34	A	G	8: 44,105,538 (GRCm39)	Y36H	probably benign	Het
Alg11	G	A	8: 22,555,309 (GRCm39)	G108D	probably damaging	Het
Alox12e	A	T	11: 70,210,771 (GRCm39)	I316N	probably damaging	Het
Arid1a	A	T	4: 133,408,677 (GRCm39)	F1943L	unknown	Het
Armh4	T	C	14: 49,989,028 (GRCm39)	D647G	probably benign	Het
Auh	G	A	13: 52,989,532 (GRCm39)	P308L	probably benign	Het
BC035044	T	C	6: 128,867,867 (GRCm39)		probably benign	Het
Bcor	G	A	X: 11,923,862 (GRCm39)	A578V	possibly damaging	Het
C1qtnf12	A	G	4: 156,050,922 (GRCm39)	N297S	probably benign	Het
Cadps2	G	T	6: 23,838,998 (GRCm39)		probably benign	Het
Ccnf	A	T	17: 24,449,288 (GRCm39)		probably null	Het
Cdadc1	A	G	14: 59,835,202 (GRCm39)		probably null	Het
Cep57l1	A	G	10: 41,616,895 (GRCm39)	Y131H	probably damaging	Het
Cfap251	T	C	5: 123,394,254 (GRCm39)	V381A	probably benign	Het
Cfap44	A	G	16: 44,272,047 (GRCm39)	R1267G	probably benign	Het
Chd3	A	T	11: 69,239,854 (GRCm39)	L1658Q	probably benign	Het
Chl1	T	C	6: 103,692,362 (GRCm39)		probably null	Het
Cmas	T	A	6: 142,717,015 (GRCm39)	D302E	probably benign	Het
Cpne3	T	A	4: 19,536,562 (GRCm39)	M233L	probably benign	Het
Csmd3	CCTTTGCGCTT	CCTT	15: 47,604,632 (GRCm39)		probably null	Het
Dennd3	T	G	15: 73,395,336 (GRCm39)	L143R	probably damaging	Het
Dnah2	T	C	11: 69,406,587 (GRCm39)	M552V	probably benign	Het
Dock2	A	G	11: 34,179,472 (GRCm39)		probably null	Het
Ergic1	A	G	17: 26,855,024 (GRCm39)		probably null	Het
Fbxl15	A	T	19: 46,317,627 (GRCm39)	D103V	probably damaging	Het
Gm4781	C	A	10: 100,232,414 (GRCm39)		noncoding transcript	Het
Hpca	A	G	4: 129,012,278 (GRCm39)	I86T	possibly damaging	Het
Katnip	T	A	7: 125,464,492 (GRCm39)	H1286Q	probably damaging	Het
Lamb3	T	C	1: 193,010,212 (GRCm39)	V275A	probably benign	Het
Lipe	G	T	7: 25,087,946 (GRCm39)	A38E	probably benign	Het
Lrrk1	A	T	7: 65,935,159 (GRCm39)		probably null	Het
Lrsam1	T	C	2: 32,835,891 (GRCm39)	K292R	probably damaging	Het
Mbtps1	A	T	8: 120,265,598 (GRCm39)	H316Q	probably benign	Het
Mms22l	T	A	4: 24,580,063 (GRCm39)	Y525*	probably null	Het
Mrps14	T	C	1: 160,022,862 (GRCm39)	L9P	possibly damaging	Het
Mycbp2	G	A	14: 103,393,358 (GRCm39)	H3068Y	probably damaging	Het
Myo15a	A	G	11: 60,401,055 (GRCm39)	D2992G	possibly damaging	Het
N4bp2	T	A	5: 65,966,543 (GRCm39)	L1327Q	probably damaging	Het
Nradd	A	T	9: 110,451,243 (GRCm39)	F42I	probably benign	Het
Or5k8	T	A	16: 58,644,842 (GRCm39)	I77F	probably damaging	Het
Pank1	T	C	19: 34,804,754 (GRCm39)	H134R	probably benign	Het
Pcdh7	T	A	5: 58,286,458 (GRCm39)	M1178K	possibly damaging	Het
Pcnx3	A	T	19: 5,717,633 (GRCm39)	I1084N	probably damaging	Het
Pdcd11	A	G	19: 47,093,191 (GRCm39)	M490V	probably benign	Het
Phf2	T	C	13: 48,958,165 (GRCm39)	K950E	unknown	Het
Pitpnc1	C	T	11: 107,103,344 (GRCm39)	A252T	probably damaging	Het
Prickle2	A	G	6: 92,402,652 (GRCm39)	L112P	probably damaging	Het
Prpf8	A	G	11: 75,381,357 (GRCm39)	I231V	probably benign	Het
Scin	T	A	12: 40,130,984 (GRCm39)	M310L	probably benign	Het
Serpina3m	T	A	12: 104,355,483 (GRCm39)	I50N	probably benign	Het
Skint8	C	G	4: 111,794,274 (GRCm39)	N221K	probably damaging	Het
Slc22a23	C	T	13: 34,366,990 (GRCm39)	V673M	probably benign	Het
Slc24a5	A	G	2: 124,929,361 (GRCm39)	D368G	probably damaging	Het
Slc28a1	A	T	7: 80,776,015 (GRCm39)	Q237L	possibly damaging	Het
Smchd1	T	A	17: 71,705,583 (GRCm39)	K1005N	possibly damaging	Het
Stim2	T	C	5: 54,262,717 (GRCm39)	Y320H	probably damaging	Het
Syne3	T	A	12: 104,919,357 (GRCm39)	D512V	probably damaging	Het
Tada2a	T	C	11: 83,970,455 (GRCm39)	D432G	probably damaging	Het
Tcp10a	T	C	17: 7,601,701 (GRCm39)	S216P	probably damaging	Het
Tmem178b	A	T	6: 40,184,435 (GRCm39)	Q111L	probably damaging	Het
Tmem236	A	G	2: 14,223,861 (GRCm39)	I217V	probably benign	Het
Tmem45b	A	G	9: 31,340,277 (GRCm39)	V128A	probably benign	Het
Tnfaip2	T	C	12: 111,412,456 (GRCm39)	Y286H	probably damaging	Het
Tsc2	T	A	17: 24,840,116 (GRCm39)	I427L	possibly damaging	Het
Ttc17	T	A	2: 94,132,139 (GRCm39)	N1180I	possibly damaging	Het
Ubr1	T	G	2: 120,694,811 (GRCm39)	D1707A	probably damaging	Het
Vmn1r11	A	G	6: 57,114,583 (GRCm39)	I82M	probably benign	Het
Vmn2r129	T	C	4: 156,687,014 (GRCm39)		noncoding transcript	Het
Vps41	G	T	13: 19,023,904 (GRCm39)		probably null	Het
Wnt5a	A	G	14: 28,235,274 (GRCm39)	Y86C	probably damaging	Het
Zfp629	T	C	7: 127,209,616 (GRCm39)	H731R	probably damaging	Het
Zfp712	T	C	13: 67,189,960 (GRCm39)	E189G	possibly damaging	Het

Other mutations in Chpf2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00850:Chpf2	APN	5	24,797,259 (GRCm39)	missense	probably damaging	1.00
IGL02110:Chpf2	APN	5	24,796,710 (GRCm39)	missense	probably damaging	1.00
IGL02625:Chpf2	APN	5	24,796,709 (GRCm39)	nonsense	probably null
IGL02673:Chpf2	APN	5	24,796,302 (GRCm39)	missense	probably benign	0.21
Aloof	UTSW	5	24,794,646 (GRCm39)	missense	possibly damaging	0.61
sine_nobilitate	UTSW	5	24,795,310 (GRCm39)	nonsense	probably null
stuffy	UTSW	5	24,795,425 (GRCm39)	missense	probably damaging	1.00
R0545:Chpf2	UTSW	5	24,795,322 (GRCm39)	missense	possibly damaging	0.89
R0571:Chpf2	UTSW	5	24,795,425 (GRCm39)	missense	probably damaging	1.00
R0732:Chpf2	UTSW	5	24,795,419 (GRCm39)	start codon destroyed	probably null	0.94
R1196:Chpf2	UTSW	5	24,794,646 (GRCm39)	missense	possibly damaging	0.61
R2051:Chpf2	UTSW	5	24,796,274 (GRCm39)	missense	probably benign	0.00
R2057:Chpf2	UTSW	5	24,796,220 (GRCm39)	missense	probably damaging	1.00
R3719:Chpf2	UTSW	5	24,795,310 (GRCm39)	nonsense	probably null
R4168:Chpf2	UTSW	5	24,796,788 (GRCm39)	missense	possibly damaging	0.86
R4632:Chpf2	UTSW	5	24,796,829 (GRCm39)	missense	probably benign
R5278:Chpf2	UTSW	5	24,793,088 (GRCm39)	intron	probably benign
R5481:Chpf2	UTSW	5	24,794,340 (GRCm39)	missense	probably damaging	1.00
R5853:Chpf2	UTSW	5	24,797,190 (GRCm39)	missense	probably damaging	1.00
R5914:Chpf2	UTSW	5	24,797,421 (GRCm39)	unclassified	probably benign
R6010:Chpf2	UTSW	5	24,796,917 (GRCm39)	missense	probably damaging	1.00
R6340:Chpf2	UTSW	5	24,796,773 (GRCm39)	missense	probably damaging	0.98
R6463:Chpf2	UTSW	5	24,794,524 (GRCm39)	missense	probably damaging	1.00
R8012:Chpf2	UTSW	5	24,795,343 (GRCm39)	missense	probably damaging	0.98
R8506:Chpf2	UTSW	5	24,793,295 (GRCm39)	missense	probably damaging	1.00
R8748:Chpf2	UTSW	5	24,796,821 (GRCm39)	missense	probably damaging	1.00
R9249:Chpf2	UTSW	5	24,794,235 (GRCm39)	missense	probably damaging	1.00
R9354:Chpf2	UTSW	5	24,796,392 (GRCm39)	missense	probably damaging	1.00
Z1177:Chpf2	UTSW	5	24,796,517 (GRCm39)	frame shift	probably null

Predicted Primers

PCR Primer
(F):5'- AACCGCTGCCGTATGAATGC -3'
(R):5'- GACAACGGTGGTACAGTTCC -3'

Sequencing Primer
(F):5'- GCCGTATGAATGCAATCTCG -3'
(R):5'- AGTCCCGCAGAGAGAACTTCTG -3'

Posted On

2014-10-01