Mutagenetix > Incidental Mutation

Incidental Mutation 'R2151:Spns3'

234284

Institutional Source

Beutler Lab

Gene Symbol

Spns3

Ensembl Gene

ENSMUSG00000020798

Gene Name

SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative)

Synonyms

9830002I17Rik

MMRRC Submission

040154-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R2151 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

72388979-72441334 bp(-) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

C to A at 72436787 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000090617 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000021154] [ENSMUST00000092940]

AlphaFold

Q9D232

Predicted Effect

probably benign
Transcript: ENSMUST00000021154

SMART Domains

Protein: ENSMUSP00000021154
Gene: ENSMUSG00000020798

Domain	Start	End	E-Value	Type
low complexity region	9	25	N/A	INTRINSIC
Pfam:MFS_1	47	402	2.4e-28	PFAM
Pfam:Sugar_tr	48	225	3.3e-9	PFAM
transmembrane domain	428	450	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000092940

SMART Domains

Protein: ENSMUSP00000090617
Gene: ENSMUSG00000020798

Domain	Start	End	E-Value	Type
low complexity region	9	25	N/A	INTRINSIC
Pfam:Sugar_tr	44	248	1.5e-11	PFAM
Pfam:OATP	50	388	4.8e-9	PFAM
Pfam:MFS_1	55	425	4.2e-35	PFAM
transmembrane domain	450	472	N/A	INTRINSIC

Coding Region Coverage

1x: 99.2%
3x: 98.7%
10x: 97.5%
20x: 95.8%

Validation Efficiency

100% (91/91)

Allele List at MGI

Other mutations in this stock

Total: 90 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930447C04Rik	T	C	12: 72,954,725 (GRCm39)		probably null	Het
4930579F01Rik	A	G	3: 137,882,217 (GRCm39)		probably null	Het
Abhd17c	G	T	7: 83,800,663 (GRCm39)	H130Q	probably damaging	Het
Actr10	T	A	12: 70,987,575 (GRCm39)	C27*	probably null	Het
Als2	G	A	1: 59,246,948 (GRCm39)	H564Y	probably damaging	Het
Anxa2r1	C	T	13: 120,496,335 (GRCm39)	C178Y	unknown	Het
Art5	A	G	7: 101,747,407 (GRCm39)	L124P	possibly damaging	Het
Asap2	A	T	12: 21,162,084 (GRCm39)	T14S	probably damaging	Het
Atp2c2	A	G	8: 120,482,841 (GRCm39)	N901S	probably benign	Het
Bicd2	G	T	13: 49,533,052 (GRCm39)	C546F	probably damaging	Het
Ccn3	G	A	15: 54,615,854 (GRCm39)	A340T	probably benign	Het
Cnbp	C	T	6: 87,822,281 (GRCm39)	G81D	probably damaging	Het
Dnah5	T	C	15: 28,444,237 (GRCm39)	Y4012H	probably damaging	Het
Dok5	G	A	2: 170,642,816 (GRCm39)	G38D	probably damaging	Het
Drc3	A	T	11: 60,265,983 (GRCm39)	E224V	probably benign	Het
Ehd2	T	C	7: 15,686,128 (GRCm39)	K315E	probably damaging	Het
Eif6	A	T	2: 155,664,810 (GRCm39)	N225K	probably benign	Het
Epg5	T	C	18: 78,070,517 (GRCm39)	V2264A	probably benign	Het
Faf2	T	C	13: 54,796,220 (GRCm39)	F126L	probably damaging	Het
Fiz1	T	C	7: 5,015,880 (GRCm39)	S37G	possibly damaging	Het
Frs3	T	C	17: 48,013,987 (GRCm39)	S227P	probably benign	Het
Garin3	A	T	11: 46,296,158 (GRCm39)	K177*	probably null	Het
Gm4787	T	A	12: 81,423,993 (GRCm39)	I722F	probably benign	Het
Gm6370	T	A	5: 146,430,451 (GRCm39)	L212Q	probably damaging	Het
Gmnc	G	A	16: 26,779,456 (GRCm39)	H142Y	possibly damaging	Het
Gna15	T	C	10: 81,338,738 (GRCm39)	Y367C	probably damaging	Het
Gpr158	G	A	2: 21,832,325 (GRCm39)	V1142M	possibly damaging	Het
Gpx6	A	G	13: 21,503,141 (GRCm39)	K185R	probably damaging	Het
Hc	A	C	2: 34,881,115 (GRCm39)		probably benign	Het
Hdac9	A	G	12: 34,440,255 (GRCm39)	S375P	probably damaging	Het
Kat6b	A	T	14: 21,718,735 (GRCm39)	H1138L	probably benign	Het
Klre1	G	A	6: 129,556,996 (GRCm39)	E33K	possibly damaging	Het
Ldhb	C	A	6: 142,444,396 (GRCm39)	V86L	possibly damaging	Het
Maco1	A	G	4: 134,538,534 (GRCm39)	V470A	probably benign	Het
Magi3	T	A	3: 103,954,198 (GRCm39)	K713I	probably damaging	Het
Magi3	T	C	3: 103,992,554 (GRCm39)	Y306C	probably damaging	Het
Minar1	T	G	9: 89,484,221 (GRCm39)	K392T	possibly damaging	Het
Mmp17	T	C	5: 129,682,725 (GRCm39)	Y455H	probably benign	Het
Mmp25	T	A	17: 23,850,048 (GRCm39)	Y504F	probably damaging	Het
Myo1a	T	C	10: 127,556,050 (GRCm39)	I969T	probably benign	Het
Nedd4l	T	A	18: 65,343,401 (GRCm39)	H820Q	probably damaging	Het
Nf1	T	A	11: 79,338,396 (GRCm39)	M1136K	possibly damaging	Het
Nmi	T	C	2: 51,842,555 (GRCm39)	E179G	probably damaging	Het
Nrros	A	T	16: 31,962,076 (GRCm39)	M611K	probably benign	Het
Nsd1	A	T	13: 55,439,049 (GRCm39)	N1692I	probably damaging	Het
Nuak1	T	C	10: 84,245,509 (GRCm39)	N112S	probably benign	Het
Odf2l	T	C	3: 144,854,785 (GRCm39)	Y488H	possibly damaging	Het
Or4c106	C	A	2: 88,683,128 (GRCm39)	P278H	probably damaging	Het
Or8g21	T	A	9: 38,906,012 (GRCm39)	T240S	probably damaging	Het
Or8g30	T	A	9: 39,230,413 (GRCm39)	I166F	probably damaging	Het
Otop2	A	G	11: 115,220,237 (GRCm39)	D359G	possibly damaging	Het
Pi4ka	A	T	16: 17,185,371 (GRCm39)	F243Y	probably benign	Het
Pnma8b	T	C	7: 16,679,837 (GRCm39)	C274R	probably benign	Het
Ppp1r42	A	G	1: 10,073,572 (GRCm39)	V6A	probably benign	Het
Prrg4	A	G	2: 104,669,733 (GRCm39)	L128S	probably damaging	Het
Prss33	C	T	17: 24,053,817 (GRCm39)	V87M	probably damaging	Het
Psen2	A	G	1: 180,061,229 (GRCm39)	V278A	probably damaging	Het
Ptpn13	C	A	5: 103,673,651 (GRCm39)	T538K	probably damaging	Het
Pttg1ip2	C	T	5: 5,528,875 (GRCm39)	V47I	possibly damaging	Het
Rad51ap2	A	G	12: 11,507,986 (GRCm39)	H636R	probably benign	Het
Rbak	A	C	5: 143,162,257 (GRCm39)	D35E	possibly damaging	Het
Rbms1	C	A	2: 60,592,392 (GRCm39)		probably null	Het
Rgs7bp	T	A	13: 105,100,597 (GRCm39)	N226I	probably damaging	Het
Rnf182	T	A	13: 43,821,899 (GRCm39)	V150E	probably benign	Het
Sacs	A	G	14: 61,447,089 (GRCm39)	Y3045C	probably damaging	Het
Scp2	G	T	4: 107,921,141 (GRCm39)	A23E	probably benign	Het
Sec16a	A	T	2: 26,303,757 (GRCm39)		probably benign	Het
Slc30a5	A	T	13: 100,940,457 (GRCm39)	H619Q	probably damaging	Het
Slfn10-ps	T	A	11: 82,926,511 (GRCm39)		noncoding transcript	Het
Slmap	A	G	14: 26,139,402 (GRCm39)	Y771H	probably damaging	Het
Slx	T	A	X: 26,489,689 (GRCm39)		probably benign	Het
Stxbp1	T	A	2: 32,692,868 (GRCm39)	I383F	probably damaging	Het
Taf3	C	T	2: 9,956,377 (GRCm39)	E597K	possibly damaging	Het
Tbcd	A	G	11: 121,494,457 (GRCm39)	Q1006R	possibly damaging	Het
Tenm4	G	T	7: 96,552,054 (GRCm39)	V2498F	probably damaging	Het
Tex2	T	C	11: 106,458,161 (GRCm39)		probably benign	Het
Tkfc	A	T	19: 10,576,421 (GRCm39)	L154Q	probably damaging	Het
Tmem62	A	G	2: 120,817,343 (GRCm39)	H257R	probably damaging	Het
Trpm2	T	C	10: 77,768,013 (GRCm39)	I829V	probably benign	Het
Ttc38	A	G	15: 85,735,802 (GRCm39)		probably null	Het
Ttn	A	T	2: 76,548,757 (GRCm39)	Y30135*	probably null	Het
Ttn	A	G	2: 76,810,477 (GRCm39)	V17A	probably benign	Het
Ubqlnl	A	T	7: 103,797,890 (GRCm39)	C536S	probably benign	Het
Vmn1r230	T	A	17: 21,067,063 (GRCm39)	M84K	probably damaging	Het
Vmn1r235	G	A	17: 21,482,628 (GRCm39)	V318I	probably benign	Het
Vmn2r76	T	C	7: 85,879,692 (GRCm39)	I203V	probably benign	Het
Vmn2r97	A	T	17: 19,167,584 (GRCm39)	R613*	probably null	Het
Zfp180	A	G	7: 23,804,685 (GRCm39)	H368R	probably damaging	Het
Zfp407	T	C	18: 84,227,774 (GRCm39)	D1945G	possibly damaging	Het
Zfyve27	G	T	19: 42,160,170 (GRCm39)	R62L	probably benign	Het

Other mutations in Spns3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00822:Spns3	APN	11	72,390,179 (GRCm39)	critical splice donor site	probably null
IGL02731:Spns3	APN	11	72,420,403 (GRCm39)	missense	probably damaging	1.00
IGL03400:Spns3	APN	11	72,390,501 (GRCm39)	missense	possibly damaging	0.65
R0948:Spns3	UTSW	11	72,436,766 (GRCm39)	missense	probably damaging	1.00
R1807:Spns3	UTSW	11	72,429,166 (GRCm39)	nonsense	probably null
R2393:Spns3	UTSW	11	72,441,059 (GRCm39)	start gained	probably benign
R3703:Spns3	UTSW	11	72,390,356 (GRCm39)	splice site	probably benign
R4207:Spns3	UTSW	11	72,429,187 (GRCm39)	missense	probably damaging	1.00
R4685:Spns3	UTSW	11	72,428,096 (GRCm39)	missense	probably damaging	1.00
R4932:Spns3	UTSW	11	72,390,321 (GRCm39)	missense	possibly damaging	0.47
R5009:Spns3	UTSW	11	72,428,027 (GRCm39)	missense	probably damaging	1.00
R5041:Spns3	UTSW	11	72,427,373 (GRCm39)	missense	possibly damaging	0.46
R5997:Spns3	UTSW	11	72,429,904 (GRCm39)	missense	probably damaging	1.00
R6179:Spns3	UTSW	11	72,390,349 (GRCm39)	missense	probably damaging	1.00
R6277:Spns3	UTSW	11	72,420,466 (GRCm39)	missense	possibly damaging	0.75
R7635:Spns3	UTSW	11	72,429,860 (GRCm39)	critical splice donor site	probably null
R8312:Spns3	UTSW	11	72,390,534 (GRCm39)	missense	probably damaging	1.00
R8881:Spns3	UTSW	11	72,429,912 (GRCm39)	missense	probably damaging	0.99
R8979:Spns3	UTSW	11	72,420,416 (GRCm39)	missense	probably damaging	0.98
X0017:Spns3	UTSW	11	72,395,891 (GRCm39)	missense	possibly damaging	0.53
Z1176:Spns3	UTSW	11	72,436,716 (GRCm39)	missense	probably damaging	1.00
Z1176:Spns3	UTSW	11	72,420,408 (GRCm39)	nonsense	probably null
Z1176:Spns3	UTSW	11	72,427,480 (GRCm39)	missense	probably damaging	1.00
Z1186:Spns3	UTSW	11	72,440,986 (GRCm39)	missense	probably benign	0.02
Z1186:Spns3	UTSW	11	72,440,863 (GRCm39)	missense	probably benign	0.00
Z1186:Spns3	UTSW	11	72,440,917 (GRCm39)	missense	probably benign	0.00
Z1187:Spns3	UTSW	11	72,440,863 (GRCm39)	missense	probably benign	0.00
Z1187:Spns3	UTSW	11	72,440,917 (GRCm39)	missense	probably benign	0.00
Z1187:Spns3	UTSW	11	72,440,986 (GRCm39)	missense	probably benign	0.02
Z1188:Spns3	UTSW	11	72,440,986 (GRCm39)	missense	probably benign	0.02
Z1188:Spns3	UTSW	11	72,440,917 (GRCm39)	missense	probably benign	0.00
Z1188:Spns3	UTSW	11	72,440,863 (GRCm39)	missense	probably benign	0.00
Z1189:Spns3	UTSW	11	72,440,986 (GRCm39)	missense	probably benign	0.02
Z1189:Spns3	UTSW	11	72,440,917 (GRCm39)	missense	probably benign	0.00
Z1189:Spns3	UTSW	11	72,440,863 (GRCm39)	missense	probably benign	0.00
Z1190:Spns3	UTSW	11	72,440,986 (GRCm39)	missense	probably benign	0.02
Z1190:Spns3	UTSW	11	72,440,917 (GRCm39)	missense	probably benign	0.00
Z1190:Spns3	UTSW	11	72,440,863 (GRCm39)	missense	probably benign	0.00
Z1191:Spns3	UTSW	11	72,440,986 (GRCm39)	missense	probably benign	0.02
Z1191:Spns3	UTSW	11	72,440,917 (GRCm39)	missense	probably benign	0.00
Z1191:Spns3	UTSW	11	72,440,863 (GRCm39)	missense	probably benign	0.00
Z1192:Spns3	UTSW	11	72,440,986 (GRCm39)	missense	probably benign	0.02
Z1192:Spns3	UTSW	11	72,440,917 (GRCm39)	missense	probably benign	0.00
Z1192:Spns3	UTSW	11	72,440,863 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- CTCCTGCCAAAAGACTCAGG -3'
(R):5'- AGGTTGGCTTTGAAATCTATGC -3'

Sequencing Primer
(F):5'- GGACTGGAGTCAGCCACAG -3'
(R):5'- CTTTAATCCCAGTACTCGGGAGG -3'

Posted On

2014-10-01