Mutagenetix > Incidental Mutation

Incidental Mutation 'R0973:Cdh18'

236749

Institutional Source

Beutler Lab

Gene Symbol

Cdh18

Ensembl Gene

ENSMUSG00000040420

Gene Name

cadherin 18

Synonyms

B230220E17Rik

MMRRC Submission

039102-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.112) question?

Stock #

R0973 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

22549108-23474504 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 23474081 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glutamic Acid at position 650 (D650E)

Ref Sequence

ENSEMBL: ENSMUSP00000130851 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000164787] [ENSMUST00000165614] [ENSMUST00000167623] [ENSMUST00000226693]

AlphaFold

E9Q9Q6

Predicted Effect

probably damaging
Transcript: ENSMUST00000164787
AA Change: D650E

PolyPhen 2 Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000130851
Gene: ENSMUSG00000040420
AA Change: D650E

Domain	Start	End	E-Value	Type
signal peptide	1	24	N/A	INTRINSIC
CA	76	157	4.24e-14	SMART
CA	181	266	1.37e-31	SMART
CA	290	382	2.76e-13	SMART
CA	405	486	3.86e-26	SMART
CA	509	596	3.7e-5	SMART
transmembrane domain	614	636	N/A	INTRINSIC
Pfam:Cadherin_C	639	783	6.8e-54	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000165614

SMART Domains

Protein: ENSMUSP00000128643
Gene: ENSMUSG00000040420

Domain	Start	End	E-Value	Type
signal peptide	1	24	N/A	INTRINSIC
CA	76	157	4.24e-14	SMART
CA	181	266	1.37e-31	SMART
CA	290	382	2.76e-13	SMART
CA	405	486	3.86e-26	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000167623

SMART Domains

Protein: ENSMUSP00000128011
Gene: ENSMUSG00000040420

Domain	Start	End	E-Value	Type
CA	22	103	4.24e-14	SMART
CA	127	212	1.37e-31	SMART
CA	236	328	2.76e-13	SMART
CA	351	414	4.15e-8	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000226693

Meta Mutation Damage Score

0.2042

Coding Region Coverage

1x: 99.2%
3x: 98.7%
10x: 97.6%
20x: 96.0%

Validation Efficiency

93% (38/41)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a type II classical cadherin from the cadherin superfamily of integral membrane proteins that mediate calcium-dependent cell-cell adhesion. Mature cadherin proteins are composed of a large N-terminal extracellular domain, a single membrane-spanning domain, and a small, highly conserved C-terminal cytoplasmic domain. Type II (atypical) cadherins are defined based on their lack of a HAV cell adhesion recognition sequence specific to type I cadherins. This particular cadherin is expressed specifically in the central nervous system and is putatively involved in synaptic adhesion, axon outgrowth and guidance. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2014]

Allele List at MGI

Other mutations in this stock

Total: 94 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700056E22Rik	C	T	1: 183,765,702 (GRCm39)	S119N	probably benign	Het
4930503L19Rik	T	A	18: 70,600,997 (GRCm39)		probably null	Het
Adam18	T	C	8: 25,137,869 (GRCm39)	T324A	probably benign	Het
Adamts20	T	A	15: 94,184,252 (GRCm39)	Q1517L	probably benign	Het
AI429214	A	G	8: 37,461,473 (GRCm39)	Q207R	probably benign	Het
Arhgef7	A	G	8: 11,869,659 (GRCm39)	T432A	possibly damaging	Het
Atad2b	A	G	12: 5,081,784 (GRCm39)	N1231S	probably benign	Het
Atp13a1	T	C	8: 70,254,794 (GRCm39)		probably null	Het
Atp6v0a1	T	A	11: 100,946,317 (GRCm39)	L770*	probably null	Het
Atp8b3	T	C	10: 80,370,032 (GRCm39)	N127S	probably damaging	Het
B3gnt5	T	A	16: 19,588,760 (GRCm39)	D326E	probably damaging	Het
Birc6	T	A	17: 74,872,856 (GRCm39)	S372T	probably damaging	Het
Btbd9	T	A	17: 30,518,607 (GRCm39)	D451V	probably damaging	Het
Cd46	T	C	1: 194,724,300 (GRCm39)	*366W	probably null	Het
Cdcp3	T	C	7: 130,839,911 (GRCm39)	L611P	probably damaging	Het
Cenpc1	A	T	5: 86,185,767 (GRCm39)	V248E	probably damaging	Het
Cep152	A	G	2: 125,436,819 (GRCm39)	S574P	probably benign	Het
Chd2	A	G	7: 73,128,412 (GRCm39)	S858P	probably damaging	Het
Cib4	T	C	5: 30,645,938 (GRCm39)	D110G	probably damaging	Het
Col9a2	T	A	4: 120,896,985 (GRCm39)		probably null	Het
Csmd2	A	T	4: 128,389,981 (GRCm39)	I2239F	possibly damaging	Het
Csmd3	C	A	15: 47,522,485 (GRCm39)	G2728V	probably damaging	Het
Cxcl1	A	T	5: 91,039,626 (GRCm39)	K85*	probably null	Het
Cyp2d11	A	G	15: 82,273,730 (GRCm39)	L416P	possibly damaging	Het
Daam1	A	C	12: 71,962,558 (GRCm39)	K90T	unknown	Het
Depdc5	T	A	5: 33,144,310 (GRCm39)	M1435K	possibly damaging	Het
Dip2c	G	A	13: 9,626,944 (GRCm39)	A632T	probably damaging	Het
Dld	A	T	12: 31,384,053 (GRCm39)	I350N	probably damaging	Het
Dmtf1	T	A	5: 9,177,987 (GRCm39)	I391F	possibly damaging	Het
Dnah14	T	C	1: 181,579,710 (GRCm39)	V3081A	probably damaging	Het
Efemp1	A	G	11: 28,804,538 (GRCm39)	E22G	probably damaging	Het
Ephb6	A	G	6: 41,591,038 (GRCm39)	D65G	probably damaging	Het
Fsip2	A	T	2: 82,807,436 (GRCm39)	T1252S	probably benign	Het
Gm4847	A	G	1: 166,457,824 (GRCm39)	S510P	probably benign	Het
Golga4	T	C	9: 118,366,341 (GRCm39)	I365T	probably damaging	Het
Gp2	A	T	7: 119,053,766 (GRCm39)	L65Q	probably damaging	Het
Ibtk	T	C	9: 85,625,630 (GRCm39)	Y40C	probably damaging	Het
Ice1	C	A	13: 70,750,546 (GRCm39)	V1847L	probably benign	Het
Ift172	C	T	5: 31,422,699 (GRCm39)	R917H	probably benign	Het
Itgae	C	T	11: 73,029,335 (GRCm39)	Q1037*	probably null	Het
Kbtbd7	A	G	14: 79,664,870 (GRCm39)	E234G	possibly damaging	Het
Khsrp	T	C	17: 57,332,576 (GRCm39)	T235A	probably benign	Het
Klk13	T	C	7: 43,370,582 (GRCm39)		probably null	Het
Lrfn5	G	A	12: 61,890,223 (GRCm39)	G504D	probably damaging	Het
Macf1	A	G	4: 123,369,793 (GRCm39)	V91A	possibly damaging	Het
Map6	G	A	7: 98,985,950 (GRCm39)	G821D	possibly damaging	Het
Mark1	A	C	1: 184,653,801 (GRCm39)	V167G	probably damaging	Het
Mrgprf	T	A	7: 144,861,993 (GRCm39)	L185Q	probably damaging	Het
Mtor	T	A	4: 148,634,645 (GRCm39)	V2422D	probably damaging	Het
Myh13	T	A	11: 67,223,346 (GRCm39)	I222N	probably damaging	Het
Myh7b	G	A	2: 155,462,347 (GRCm39)	C350Y	probably benign	Het
Nfix	G	A	8: 85,453,155 (GRCm39)	R300C	probably damaging	Het
Olfm3	C	A	3: 114,895,635 (GRCm39)	S172R	probably benign	Het
Or13e8	A	G	4: 43,696,706 (GRCm39)	S156P	probably damaging	Het
Or1j14	A	G	2: 36,418,020 (GRCm39)	I199V	probably benign	Het
Or4c1	A	T	2: 89,133,528 (GRCm39)	I136N	probably damaging	Het
Or5d40	A	T	2: 88,015,322 (GRCm39)	T34S	probably benign	Het
Or8b48	T	A	9: 38,492,579 (GRCm39)	V2D	possibly damaging	Het
Pacs1	A	T	19: 5,193,857 (GRCm39)	D557E	probably damaging	Het
Pde1c	A	G	6: 56,338,800 (GRCm39)	F11L	probably benign	Het
Phactr2	T	C	10: 13,122,883 (GRCm39)	D343G	possibly damaging	Het
Piezo2	T	C	18: 63,148,873 (GRCm39)	Y2659C	probably damaging	Het
Pkd2l2	A	G	18: 34,561,305 (GRCm39)	T438A	probably damaging	Het
Pld2	T	C	11: 70,447,907 (GRCm39)	W857R	probably damaging	Het
Plxnb1	T	C	9: 108,931,210 (GRCm39)	V410A	possibly damaging	Het
Pramel26	T	C	4: 143,538,428 (GRCm39)	Y181C	probably damaging	Het
Ptger2	A	G	14: 45,226,957 (GRCm39)	Y179C	probably damaging	Het
Ptpro	T	A	6: 137,420,592 (GRCm39)	V1007D	probably damaging	Het
Rcan1	A	T	16: 92,190,408 (GRCm39)	M177K	probably benign	Het
Rilpl1	A	G	5: 124,639,934 (GRCm39)	S156P	probably benign	Het
Rilpl1	A	G	5: 124,639,951 (GRCm39)	I122T	possibly damaging	Het
Rims4	C	T	2: 163,705,849 (GRCm39)	V262M	possibly damaging	Het
Rpa1	C	T	11: 75,203,799 (GRCm39)		probably null	Het
Saxo2	A	G	7: 82,284,078 (GRCm39)	V260A	probably benign	Het
Sel1l	T	C	12: 91,791,634 (GRCm39)	Y309C	probably damaging	Het
Setd1b	GCCCCCCC	GCCCCCCCCCCCCC	5: 123,298,766 (GRCm39)		probably benign	Het
Slc33a1	A	G	3: 63,850,725 (GRCm39)	F533S	probably benign	Het
Slc38a4	C	T	15: 96,903,739 (GRCm39)	V421M	probably benign	Het
Snx14	A	G	9: 88,282,774 (GRCm39)		probably null	Het
Spef2	A	G	15: 9,716,482 (GRCm39)	F368S	probably damaging	Het
Sri	A	T	5: 8,109,381 (GRCm39)	Q55L	probably damaging	Het
Stat4	A	G	1: 52,135,979 (GRCm39)	I429M	probably damaging	Het
Stkld1	A	T	2: 26,841,462 (GRCm39)	Q469L	probably benign	Het
Tm9sf1	T	C	14: 55,880,392 (GRCm39)	T2A	possibly damaging	Het
Tmco5	A	G	2: 116,713,699 (GRCm39)	T122A	probably benign	Het
Tmem59l	G	A	8: 70,938,710 (GRCm39)	P124S	possibly damaging	Het
Tmem81	G	A	1: 132,435,662 (GRCm39)	R156Q	probably damaging	Het
Trpv6	T	A	6: 41,602,122 (GRCm39)	T396S	probably benign	Het
Usp24	T	A	4: 106,228,276 (GRCm39)	Y780*	probably null	Het
Utp25	A	T	1: 192,797,011 (GRCm39)	N573K	probably damaging	Het
Vmn1r120	A	G	7: 20,786,941 (GRCm39)	C257R	probably damaging	Het
Vmn2r53	A	G	7: 12,335,319 (GRCm39)	F114L	probably damaging	Het
Vwf	A	G	6: 125,619,969 (GRCm39)	E1549G	probably damaging	Het
Zfp626	G	A	7: 27,517,907 (GRCm39)	R296H	probably damaging	Het

Other mutations in Cdh18

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00973:Cdh18	APN	15	23,173,882 (GRCm39)	missense	probably damaging	0.97
IGL01663:Cdh18	APN	15	23,446,077 (GRCm39)	missense	possibly damaging	0.92
IGL01758:Cdh18	APN	15	23,474,269 (GRCm39)	missense	probably benign	0.20
IGL02192:Cdh18	APN	15	23,460,402 (GRCm39)	missense	probably damaging	1.00
IGL02448:Cdh18	APN	15	23,173,875 (GRCm39)	missense	probably benign	0.00
IGL02717:Cdh18	APN	15	23,410,801 (GRCm39)	nonsense	probably null
IGL03241:Cdh18	APN	15	23,227,019 (GRCm39)	missense	probably benign	0.19
IGL03268:Cdh18	APN	15	23,366,953 (GRCm39)	missense	probably damaging	1.00
IGL03307:Cdh18	APN	15	23,226,872 (GRCm39)	missense	probably damaging	1.00
R0316:Cdh18	UTSW	15	23,366,999 (GRCm39)	missense	probably damaging	1.00
R0462:Cdh18	UTSW	15	23,366,971 (GRCm39)	missense	probably damaging	1.00
R0607:Cdh18	UTSW	15	23,410,876 (GRCm39)	missense	probably benign	0.01
R0761:Cdh18	UTSW	15	23,226,838 (GRCm39)	missense	possibly damaging	0.87
R1110:Cdh18	UTSW	15	23,474,403 (GRCm39)	missense	probably benign	0.00
R1550:Cdh18	UTSW	15	23,436,634 (GRCm39)	missense	probably damaging	1.00
R1656:Cdh18	UTSW	15	23,474,485 (GRCm39)	missense	probably benign	0.38
R1682:Cdh18	UTSW	15	23,400,671 (GRCm39)	missense	probably benign	0.05
R1770:Cdh18	UTSW	15	23,474,487 (GRCm39)	missense	probably benign
R1829:Cdh18	UTSW	15	23,173,938 (GRCm39)	missense	probably damaging	1.00
R2253:Cdh18	UTSW	15	23,410,891 (GRCm39)	missense	probably benign	0.00
R2435:Cdh18	UTSW	15	23,367,094 (GRCm39)	missense	probably damaging	1.00
R3914:Cdh18	UTSW	15	23,410,771 (GRCm39)	missense	probably damaging	1.00
R3964:Cdh18	UTSW	15	23,474,187 (GRCm39)	missense	probably benign
R4002:Cdh18	UTSW	15	23,383,048 (GRCm39)	missense	possibly damaging	0.48
R4291:Cdh18	UTSW	15	22,714,637 (GRCm39)	intron	probably benign
R4581:Cdh18	UTSW	15	23,226,869 (GRCm39)	missense	probably damaging	1.00
R4604:Cdh18	UTSW	15	23,474,454 (GRCm39)	missense	probably benign	0.05
R4625:Cdh18	UTSW	15	22,714,128 (GRCm39)	intron	probably benign
R4786:Cdh18	UTSW	15	23,410,873 (GRCm39)	missense	probably null	1.00
R4811:Cdh18	UTSW	15	23,226,877 (GRCm39)	missense	probably benign	0.30
R5023:Cdh18	UTSW	15	23,259,752 (GRCm39)	missense	probably damaging	1.00
R5094:Cdh18	UTSW	15	22,714,625 (GRCm39)	intron	probably benign
R5278:Cdh18	UTSW	15	23,474,244 (GRCm39)	missense	probably benign	0.04
R5416:Cdh18	UTSW	15	23,226,809 (GRCm39)	missense	probably damaging	1.00
R5503:Cdh18	UTSW	15	23,436,620 (GRCm39)	missense	probably damaging	0.96
R5617:Cdh18	UTSW	15	23,226,854 (GRCm39)	missense	probably damaging	0.97
R5982:Cdh18	UTSW	15	23,474,302 (GRCm39)	missense	possibly damaging	0.89
R6240:Cdh18	UTSW	15	23,227,022 (GRCm39)	missense	possibly damaging	0.82
R6475:Cdh18	UTSW	15	23,227,022 (GRCm39)	missense	possibly damaging	0.82
R6649:Cdh18	UTSW	15	23,436,620 (GRCm39)	missense	possibly damaging	0.87
R6700:Cdh18	UTSW	15	23,474,191 (GRCm39)	missense	probably benign
R6718:Cdh18	UTSW	15	23,226,835 (GRCm39)	missense	probably benign	0.15
R6796:Cdh18	UTSW	15	23,446,159 (GRCm39)	missense	probably damaging	1.00
R7330:Cdh18	UTSW	15	23,227,036 (GRCm39)	missense	possibly damaging	0.46
R7429:Cdh18	UTSW	15	23,366,942 (GRCm39)	missense	possibly damaging	0.89
R7477:Cdh18	UTSW	15	23,410,811 (GRCm39)	missense	probably benign
R7516:Cdh18	UTSW	15	23,259,684 (GRCm39)	splice site	probably null
R7519:Cdh18	UTSW	15	23,474,298 (GRCm39)	missense	possibly damaging	0.68
R7575:Cdh18	UTSW	15	23,400,683 (GRCm39)	nonsense	probably null
R7618:Cdh18	UTSW	15	23,367,056 (GRCm39)	missense	probably damaging	1.00
R7844:Cdh18	UTSW	15	23,410,873 (GRCm39)	missense	probably damaging	1.00
R7870:Cdh18	UTSW	15	23,474,413 (GRCm39)	missense	possibly damaging	0.94
R8288:Cdh18	UTSW	15	23,446,073 (GRCm39)	missense	probably damaging	1.00
R8420:Cdh18	UTSW	15	23,474,138 (GRCm39)	missense	possibly damaging	0.94
R8430:Cdh18	UTSW	15	23,226,770 (GRCm39)	missense	probably damaging	1.00
R8916:Cdh18	UTSW	15	23,410,813 (GRCm39)	missense	probably damaging	0.99
R9093:Cdh18	UTSW	15	23,474,064 (GRCm39)	missense	probably damaging	1.00
R9183:Cdh18	UTSW	15	23,227,065 (GRCm39)	critical splice donor site	probably null
R9399:Cdh18	UTSW	15	23,173,899 (GRCm39)	missense	probably damaging	1.00
R9531:Cdh18	UTSW	15	23,436,562 (GRCm39)	missense	probably benign
Z1189:Cdh18	UTSW	15	23,474,369 (GRCm39)	missense	probably benign	0.17

Predicted Primers

PCR Primer
(F):5'- GTGTGCAGATCAAGGCTGTG -3'
(R):5'- TAAACTCCTGAACGTCTATGCTC -3'

Sequencing Primer
(F):5'- CAGATCAAGGCTGTGTTGCTAC -3'
(R):5'- TATGCTCTCCAGGGTGGACAAG -3'

Posted On

2014-10-02