Incidental Mutation 'R2184:Agl'
ID 237333
Institutional Source Beutler Lab
Gene Symbol Agl
Ensembl Gene ENSMUSG00000033400
Gene Name amylo-1,6-glucosidase, 4-alpha-glucanotransferase
Synonyms 9430004C13Rik, 9630046L06Rik, 1110061O17Rik
MMRRC Submission 040186-MU
Accession Numbers
Essential gene? Possibly non essential (E-score: 0.360) question?
Stock # R2184 (G1)
Quality Score 225
Status Not validated
Chromosome 3
Chromosomal Location 116533648-116601815 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 116574426 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Asparagine to Aspartic acid at position 753 (N753D)
Ref Sequence ENSEMBL: ENSMUSP00000124149 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000040603] [ENSMUST00000159742] [ENSMUST00000161336] [ENSMUST00000162792]
AlphaFold F8VPN4
Predicted Effect probably benign
Transcript: ENSMUST00000040603
AA Change: N753D

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
SMART Domains Protein: ENSMUSP00000044012
Gene: ENSMUSG00000033400
AA Change: N753D

DomainStartEndE-ValueType
Pfam:hGDE_N 31 116 4.8e-24 PFAM
Pfam:hDGE_amylase 120 550 9.6e-167 PFAM
Pfam:hGDE_central 697 974 2e-90 PFAM
Pfam:GDE_C 1044 1527 8.5e-145 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000159742
AA Change: N753D

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000143582
Gene: ENSMUSG00000033400
AA Change: N753D

DomainStartEndE-ValueType
Pfam:hGDE_N 31 116 2.1e-20 PFAM
Pfam:hDGE_amylase 120 550 7.8e-164 PFAM
Pfam:hGDE_central 697 974 6.2e-87 PFAM
Pfam:GDE_C 1043 1279 6.7e-61 PFAM
Predicted Effect unknown
Transcript: ENSMUST00000159995
AA Change: N174D
SMART Domains Protein: ENSMUSP00000125246
Gene: ENSMUSG00000033400
AA Change: N174D

DomainStartEndE-ValueType
Pfam:hGDE_central 119 197 8.8e-25 PFAM
Predicted Effect unknown
Transcript: ENSMUST00000160484
AA Change: N88D
SMART Domains Protein: ENSMUSP00000123985
Gene: ENSMUSG00000033400
AA Change: N88D

DomainStartEndE-ValueType
Pfam:hGDE_central 33 310 2.8e-87 PFAM
Pfam:GDE_C 379 830 1.3e-126 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000161336
SMART Domains Protein: ENSMUSP00000123877
Gene: ENSMUSG00000033400

DomainStartEndE-ValueType
Pfam:hGDE_N 30 117 2.1e-29 PFAM
Pfam:hDGE_amylase 120 230 3.7e-43 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000162792
AA Change: N753D

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
SMART Domains Protein: ENSMUSP00000124149
Gene: ENSMUSG00000033400
AA Change: N753D

DomainStartEndE-ValueType
Pfam:hGDE_N 30 117 4e-28 PFAM
Pfam:hDGE_amylase 120 550 1.4e-167 PFAM
Pfam:hGDE_central 697 975 5.6e-95 PFAM
Pfam:GDE_C 1061 1527 1.1e-137 PFAM
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.7%
  • 10x: 97.4%
  • 20x: 95.4%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes the glycogen debrancher enzyme which is involved in glycogen degradation. This enzyme has two independent catalytic activities which occur at different sites on the protein: a 4-alpha-glucotransferase activity and a amylo-1,6-glucosidase activity. Mutations in this gene are associated with glycogen storage disease although a wide range of enzymatic and clinical variability occurs which may be due to tissue-specific alternative splicing. Alternatively spliced transcripts encoding different isoforms have been described. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous inactivation of this gene leads to hypoglycemia, altered blood biochemistry, severe hepatomegaly, glycogen accumulation in the liver, heart, skeletal muscle and other tissues, motor impairment, and premature death. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 78 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700088E04Rik T C 15: 79,019,389 (GRCm39) R184G probably damaging Het
2300002M23Rik C A 17: 35,879,115 (GRCm39) A151E probably benign Het
A930011G23Rik C T 5: 99,380,228 (GRCm39) R339Q possibly damaging Het
Abcd2 T C 15: 91,075,642 (GRCm39) Y57C probably benign Het
Adprhl1 A G 8: 13,292,559 (GRCm39) V244A probably benign Het
Amotl1 T A 9: 14,486,686 (GRCm39) M440L probably benign Het
Angpt2 A G 8: 18,742,132 (GRCm39) Y475H probably benign Het
Angpt4 A T 2: 151,780,874 (GRCm39) H374L probably damaging Het
Ank1 A T 8: 23,599,270 (GRCm39) T801S probably damaging Het
Ap5m1 G T 14: 49,323,752 (GRCm39) A481S probably damaging Het
AY358078 G T 14: 52,063,445 (GRCm39) G364W probably damaging Het
C4b C A 17: 34,956,676 (GRCm39) A641S probably benign Het
Capn13 T C 17: 73,672,943 (GRCm39) Y120C probably damaging Het
Cbx6 T C 15: 79,712,762 (GRCm39) T222A probably benign Het
Cckar T C 5: 53,860,254 (GRCm39) T192A probably damaging Het
Cdc42bpb T C 12: 111,262,478 (GRCm39) D30G probably damaging Het
Cdk18 A G 1: 132,043,690 (GRCm39) Y385H probably damaging Het
Cep170 A T 1: 176,584,542 (GRCm39) D612E probably benign Het
Dennd4b G T 3: 90,182,847 (GRCm39) R888L probably damaging Het
Egf A T 3: 129,517,007 (GRCm39) C373* probably null Het
Gabrb2 T C 11: 42,312,255 (GRCm39) probably null Het
Gle1 G T 2: 29,839,030 (GRCm39) A482S probably damaging Het
Gm10644 T C 8: 84,660,256 (GRCm39) T30A possibly damaging Het
Gmnn A G 13: 24,937,706 (GRCm39) Y95H probably damaging Het
Hectd3 T A 4: 116,858,100 (GRCm39) S643T possibly damaging Het
Hoga1 A G 19: 42,049,830 (GRCm39) Y225C probably damaging Het
Hook3 T C 8: 26,609,011 (GRCm39) E11G probably benign Het
Hsd17b1 C A 11: 100,969,357 (GRCm39) S30R probably benign Het
Htr3b G A 9: 48,858,544 (GRCm39) P112S probably damaging Het
Iqch T A 9: 63,432,351 (GRCm39) D348V probably damaging Het
Irgm2 A T 11: 58,111,254 (GRCm39) N327I probably benign Het
Itgb4 T C 11: 115,870,450 (GRCm39) I93T probably damaging Het
Lamb2 T C 9: 108,357,752 (GRCm39) F92L probably damaging Het
Lats2 T C 14: 57,929,016 (GRCm39) H953R probably damaging Het
Lrp1b T C 2: 40,620,714 (GRCm39) E3588G probably benign Het
Marchf1 A G 8: 66,840,075 (GRCm39) E286G probably benign Het
Mc2r G T 18: 68,541,196 (GRCm39) F32L probably benign Het
Mink1 C T 11: 70,494,623 (GRCm39) T268M probably damaging Het
Mta1 G A 12: 113,093,815 (GRCm39) probably null Het
Muc5b C A 7: 141,412,601 (GRCm39) S1849* probably null Het
Myh15 A G 16: 48,957,874 (GRCm39) E897G probably damaging Het
Nobox T C 6: 43,281,819 (GRCm39) Q418R possibly damaging Het
Obsl1 G T 1: 75,478,861 (GRCm39) Q626K probably benign Het
Or11h4 A G 14: 50,974,059 (GRCm39) S187P probably damaging Het
Or13a24 T C 7: 140,154,315 (GRCm39) V83A probably benign Het
Or1j12 A G 2: 36,343,046 (GRCm39) T150A probably benign Het
Or2w25 T A 11: 59,503,964 (GRCm39) M58K probably damaging Het
Or5w14 G A 2: 87,541,549 (GRCm39) R234C probably damaging Het
Or8k24 G A 2: 86,216,489 (GRCm39) T91I probably benign Het
Or9i1 A G 19: 13,839,399 (GRCm39) I81V probably benign Het
Pald1 C T 10: 61,182,915 (GRCm39) A345T possibly damaging Het
Pde8b G A 13: 95,162,723 (GRCm39) P800S probably damaging Het
Pgm2l1 G A 7: 99,917,362 (GRCm39) C493Y possibly damaging Het
Pias3 A G 3: 96,609,537 (GRCm39) S311G possibly damaging Het
Pkhd1l1 A G 15: 44,362,692 (GRCm39) N573D possibly damaging Het
Plaat3 A G 19: 7,556,583 (GRCm39) D128G probably damaging Het
Plxnc1 T G 10: 94,780,131 (GRCm39) S104R probably damaging Het
Pofut2 T A 10: 77,103,059 (GRCm39) F179I probably damaging Het
Prkcsh T A 9: 21,916,028 (GRCm39) C112S probably damaging Het
Prss32 G A 17: 24,078,297 (GRCm39) A328T probably benign Het
Ptgir G T 7: 16,642,708 (GRCm39) R103L probably damaging Het
Ptpn5 G A 7: 46,738,350 (GRCm39) S244F probably damaging Het
Rnpepl1 G A 1: 92,844,545 (GRCm39) V346I probably benign Het
Sh3rf1 T A 8: 61,825,688 (GRCm39) V561D probably damaging Het
Slc22a19 A T 19: 7,687,026 (GRCm39) Y160N probably benign Het
Sorbs3 A G 14: 70,428,880 (GRCm39) probably null Het
Sostdc1 T G 12: 36,367,295 (GRCm39) I157S probably damaging Het
Svil G T 18: 5,099,534 (GRCm39) R1777L probably damaging Het
Svil A T 18: 5,099,615 (GRCm39) E1804V probably damaging Het
Tasor T A 14: 27,188,141 (GRCm39) N862K possibly damaging Het
Thbs4 A G 13: 92,911,302 (GRCm39) S294P probably benign Het
Tle2 A G 10: 81,426,111 (GRCm39) Y750C probably damaging Het
Tmcc3 T C 10: 94,418,168 (GRCm39) L312P probably damaging Het
Tnip2 TCTCCT TCT 5: 34,656,957 (GRCm39) probably benign Het
Tnpo2 T A 8: 85,780,475 (GRCm39) M734K probably benign Het
Trmt2a A T 16: 18,070,859 (GRCm39) R531W probably benign Het
Ubn2 C T 6: 38,461,029 (GRCm39) R483W probably damaging Het
Zc3hav1 T A 6: 38,284,343 (GRCm39) Y924F probably damaging Het
Other mutations in Agl
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00235:Agl APN 3 116,565,132 (GRCm39) missense probably benign 0.10
IGL00500:Agl APN 3 116,566,469 (GRCm39) missense probably damaging 1.00
IGL00691:Agl APN 3 116,572,907 (GRCm39) missense possibly damaging 0.46
IGL00711:Agl APN 3 116,587,276 (GRCm39) missense probably damaging 1.00
IGL01291:Agl APN 3 116,566,438 (GRCm39) missense possibly damaging 0.49
IGL01641:Agl APN 3 116,578,104 (GRCm39) nonsense probably null
IGL01860:Agl APN 3 116,566,175 (GRCm39) splice site probably benign
IGL01893:Agl APN 3 116,582,198 (GRCm39) missense probably damaging 0.97
IGL02193:Agl APN 3 116,572,815 (GRCm39) missense probably damaging 0.99
IGL02379:Agl APN 3 116,572,740 (GRCm39) missense probably damaging 1.00
IGL02485:Agl APN 3 116,572,729 (GRCm39) missense probably benign
IGL02644:Agl APN 3 116,580,246 (GRCm39) missense probably damaging 1.00
IGL02673:Agl APN 3 116,575,248 (GRCm39) missense probably benign 0.01
IGL02693:Agl APN 3 116,540,077 (GRCm39) missense possibly damaging 0.67
IGL02733:Agl APN 3 116,574,646 (GRCm39) missense probably benign
IGL03089:Agl APN 3 116,574,672 (GRCm39) missense probably damaging 1.00
IGL03271:Agl APN 3 116,572,776 (GRCm39) missense probably benign 0.00
ANU05:Agl UTSW 3 116,566,438 (GRCm39) missense possibly damaging 0.49
PIT4445001:Agl UTSW 3 116,565,109 (GRCm39) missense
R0013:Agl UTSW 3 116,570,257 (GRCm39) nonsense probably null
R0013:Agl UTSW 3 116,570,257 (GRCm39) nonsense probably null
R0022:Agl UTSW 3 116,587,485 (GRCm39) splice site probably null
R0092:Agl UTSW 3 116,587,453 (GRCm39) missense probably damaging 1.00
R0226:Agl UTSW 3 116,545,720 (GRCm39) missense probably damaging 1.00
R0440:Agl UTSW 3 116,552,455 (GRCm39) missense probably damaging 1.00
R0488:Agl UTSW 3 116,548,611 (GRCm39) nonsense probably null
R0504:Agl UTSW 3 116,580,433 (GRCm39) missense probably damaging 0.99
R0689:Agl UTSW 3 116,587,277 (GRCm39) missense probably damaging 1.00
R0715:Agl UTSW 3 116,545,825 (GRCm39) missense probably damaging 1.00
R0893:Agl UTSW 3 116,546,935 (GRCm39) missense probably benign 0.04
R1403:Agl UTSW 3 116,576,246 (GRCm39) missense probably benign 0.12
R1403:Agl UTSW 3 116,576,246 (GRCm39) missense probably benign 0.12
R1432:Agl UTSW 3 116,540,342 (GRCm39) missense probably damaging 1.00
R1465:Agl UTSW 3 116,565,021 (GRCm39) missense probably benign 0.35
R1465:Agl UTSW 3 116,565,021 (GRCm39) missense probably benign 0.35
R1540:Agl UTSW 3 116,574,384 (GRCm39) missense probably benign 0.01
R1624:Agl UTSW 3 116,580,895 (GRCm39) missense probably benign 0.30
R1640:Agl UTSW 3 116,545,739 (GRCm39) missense probably benign 0.02
R1834:Agl UTSW 3 116,582,000 (GRCm39) missense probably benign 0.31
R1853:Agl UTSW 3 116,572,971 (GRCm39) nonsense probably null
R2004:Agl UTSW 3 116,574,914 (GRCm39) missense probably damaging 1.00
R2227:Agl UTSW 3 116,581,961 (GRCm39) missense possibly damaging 0.78
R3053:Agl UTSW 3 116,584,682 (GRCm39) missense probably damaging 1.00
R4181:Agl UTSW 3 116,540,279 (GRCm39) missense probably damaging 1.00
R4241:Agl UTSW 3 116,548,497 (GRCm39) intron probably benign
R4284:Agl UTSW 3 116,545,827 (GRCm39) missense possibly damaging 0.83
R4285:Agl UTSW 3 116,545,827 (GRCm39) missense possibly damaging 0.83
R4302:Agl UTSW 3 116,540,279 (GRCm39) missense probably damaging 1.00
R4791:Agl UTSW 3 116,580,177 (GRCm39) critical splice donor site probably null
R4854:Agl UTSW 3 116,572,267 (GRCm39) critical splice donor site probably null
R4968:Agl UTSW 3 116,582,175 (GRCm39) missense probably benign 0.31
R5075:Agl UTSW 3 116,587,456 (GRCm39) missense probably damaging 1.00
R5219:Agl UTSW 3 116,572,370 (GRCm39) missense possibly damaging 0.81
R5274:Agl UTSW 3 116,566,135 (GRCm39) missense probably damaging 1.00
R5347:Agl UTSW 3 116,584,814 (GRCm39) missense probably damaging 1.00
R5399:Agl UTSW 3 116,575,277 (GRCm39) missense probably damaging 1.00
R5511:Agl UTSW 3 116,582,209 (GRCm39) missense possibly damaging 0.81
R5763:Agl UTSW 3 116,547,009 (GRCm39) missense probably damaging 1.00
R5827:Agl UTSW 3 116,574,703 (GRCm39) missense probably damaging 1.00
R5964:Agl UTSW 3 116,587,423 (GRCm39) missense probably damaging 1.00
R5967:Agl UTSW 3 116,587,357 (GRCm39) missense probably benign 0.06
R5986:Agl UTSW 3 116,566,145 (GRCm39) missense probably damaging 1.00
R6127:Agl UTSW 3 116,551,978 (GRCm39) missense probably damaging 1.00
R6209:Agl UTSW 3 116,578,845 (GRCm39) nonsense probably null
R6252:Agl UTSW 3 116,580,878 (GRCm39) critical splice donor site probably null
R6337:Agl UTSW 3 116,580,426 (GRCm39) missense possibly damaging 0.65
R6366:Agl UTSW 3 116,584,766 (GRCm39) missense probably damaging 1.00
R6441:Agl UTSW 3 116,565,108 (GRCm39) missense probably benign 0.21
R6647:Agl UTSW 3 116,544,060 (GRCm39) missense probably damaging 1.00
R6678:Agl UTSW 3 116,546,969 (GRCm39) missense probably damaging 0.99
R6736:Agl UTSW 3 116,575,329 (GRCm39) missense probably damaging 0.98
R7141:Agl UTSW 3 116,546,935 (GRCm39) missense probably benign 0.04
R7143:Agl UTSW 3 116,585,670 (GRCm39) missense probably damaging 0.99
R7204:Agl UTSW 3 116,587,469 (GRCm39) missense probably benign 0.04
R7259:Agl UTSW 3 116,578,230 (GRCm39) missense probably damaging 1.00
R7393:Agl UTSW 3 116,584,805 (GRCm39) missense probably benign
R7426:Agl UTSW 3 116,552,404 (GRCm39) missense
R7559:Agl UTSW 3 116,545,764 (GRCm39) missense
R7587:Agl UTSW 3 116,585,736 (GRCm39) missense probably damaging 1.00
R7609:Agl UTSW 3 116,600,928 (GRCm39) missense possibly damaging 0.93
R7657:Agl UTSW 3 116,572,812 (GRCm39) missense
R7715:Agl UTSW 3 116,551,905 (GRCm39) missense
R7735:Agl UTSW 3 116,578,795 (GRCm39) missense probably benign 0.21
R7770:Agl UTSW 3 116,551,886 (GRCm39) critical splice donor site probably null
R7980:Agl UTSW 3 116,585,830 (GRCm39) missense probably benign 0.08
R8186:Agl UTSW 3 116,552,557 (GRCm39) missense possibly damaging 0.92
R8215:Agl UTSW 3 116,582,293 (GRCm39) missense probably damaging 1.00
R8336:Agl UTSW 3 116,566,495 (GRCm39) missense
R8709:Agl UTSW 3 116,566,121 (GRCm39) missense
R9545:Agl UTSW 3 116,582,338 (GRCm39) missense possibly damaging 0.96
X0065:Agl UTSW 3 116,574,979 (GRCm39) nonsense probably null
Z1177:Agl UTSW 3 116,574,685 (GRCm39) missense
Predicted Primers PCR Primer
(F):5'- TCCATGCAGTGAAAGTGTCTG -3'
(R):5'- AGCCAAGGGTTTCATTCAAGTAAG -3'

Sequencing Primer
(F):5'- CAGTGAAAGTGTCTGCATTCTAAC -3'
(R):5'- GGGTTTCATTCAAGTAAGAAATGAAC -3'
Posted On 2014-10-02