Incidental Mutation 'R2189:Or5p4'
| ID |
237973 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or5p4
|
| Ensembl Gene |
ENSMUSG00000054236 |
| Gene Name |
olfactory receptor family 5 subfamily P member 4 |
| Synonyms |
MOR204-39, MOR204-2, Olfr481, GA_x6K02T2PBJ9-10409785-10410723 |
| MMRRC Submission |
040191-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.067)
|
| Stock # |
R2189 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
7 |
| Chromosomal Location |
107680003-107680941 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to T
at 107680243 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Methionine to Leucine
at position 81
(M81L)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000151152
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000067143]
[ENSMUST00000213601]
|
| AlphaFold |
Q8VGI5 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000067143
AA Change: M81L
PolyPhen 2
Score 0.471 (Sensitivity: 0.89; Specificity: 0.90)
|
| SMART Domains |
Protein: ENSMUSP00000063555
Gene: ENSMUSG00000054236
AA Change: M81L
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
31 |
308 |
6.5e-51 |
PFAM |
|
Pfam:7tm_1
|
41 |
290 |
1.4e-19 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000210338
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000213601
AA Change: M81L
PolyPhen 2
Score 0.471 (Sensitivity: 0.89; Specificity: 0.90)
|
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.7%
- 10x: 97.3%
- 20x: 95.1%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 40 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Acan |
G |
C |
7: 78,747,839 (GRCm39) |
G870A |
probably damaging |
Het |
| Adamtsl2 |
T |
C |
2: 26,971,750 (GRCm39) |
W12R |
probably benign |
Het |
| Bsph1 |
G |
A |
7: 13,204,254 (GRCm39) |
|
probably null |
Het |
| Celsr1 |
G |
T |
15: 85,863,431 (GRCm39) |
H1200Q |
possibly damaging |
Het |
| Clptm1 |
A |
T |
7: 19,371,070 (GRCm39) |
Y355* |
probably null |
Het |
| Cry2 |
T |
C |
2: 92,242,037 (GRCm39) |
E572G |
possibly damaging |
Het |
| Dlk1 |
G |
A |
12: 109,420,975 (GRCm39) |
|
probably null |
Het |
| Eral1 |
A |
G |
11: 77,966,657 (GRCm39) |
V201A |
probably benign |
Het |
| Esrp1 |
A |
T |
4: 11,357,603 (GRCm39) |
M503K |
probably benign |
Het |
| Fam83e |
G |
T |
7: 45,371,607 (GRCm39) |
M1I |
probably null |
Het |
| Flt4 |
G |
A |
11: 49,526,525 (GRCm39) |
A835T |
probably benign |
Het |
| H2bc15 |
A |
G |
13: 21,938,447 (GRCm39) |
D52G |
probably damaging |
Het |
| Hdac4 |
T |
C |
1: 91,903,244 (GRCm39) |
S562G |
probably null |
Het |
| Icosl |
A |
G |
10: 77,909,759 (GRCm39) |
T235A |
possibly damaging |
Het |
| Itga6 |
A |
G |
2: 71,655,961 (GRCm39) |
D295G |
probably benign |
Het |
| Klk14 |
G |
A |
7: 43,341,501 (GRCm39) |
C51Y |
probably damaging |
Het |
| Lipa |
A |
T |
19: 34,502,199 (GRCm39) |
L15Q |
probably benign |
Het |
| Mcc |
T |
C |
18: 44,667,297 (GRCm39) |
E218G |
possibly damaging |
Het |
| Mdga2 |
A |
G |
12: 66,519,970 (GRCm39) |
|
probably null |
Het |
| Mmadhc |
A |
C |
2: 50,178,958 (GRCm39) |
C153W |
probably damaging |
Het |
| Myh1 |
A |
G |
11: 67,112,430 (GRCm39) |
D1799G |
probably damaging |
Het |
| Nlrp1b |
T |
A |
11: 71,060,621 (GRCm39) |
Q729L |
probably damaging |
Het |
| Ofcc1 |
T |
A |
13: 40,333,924 (GRCm39) |
Q389L |
probably benign |
Het |
| Or52b2 |
A |
G |
7: 104,986,809 (GRCm39) |
V38A |
probably benign |
Het |
| Or5m5 |
A |
G |
2: 85,814,412 (GRCm39) |
D76G |
probably damaging |
Het |
| Or5p50 |
T |
C |
7: 107,421,822 (GRCm39) |
I285V |
probably benign |
Het |
| Pml |
T |
C |
9: 58,142,157 (GRCm39) |
N225S |
probably benign |
Het |
| Rnf213 |
A |
G |
11: 119,321,187 (GRCm39) |
E1215G |
probably benign |
Het |
| Scap |
T |
A |
9: 110,206,761 (GRCm39) |
I402N |
probably damaging |
Het |
| Sgsm2 |
A |
G |
11: 74,743,908 (GRCm39) |
L886P |
probably damaging |
Het |
| Sugct |
T |
C |
13: 17,836,851 (GRCm39) |
I104V |
probably benign |
Het |
| Tmem200c |
A |
G |
17: 69,147,681 (GRCm39) |
Q88R |
probably damaging |
Het |
| Tnfrsf1a |
T |
A |
6: 125,334,768 (GRCm39) |
L14Q |
probably benign |
Het |
| Tnk2 |
C |
T |
16: 32,490,239 (GRCm39) |
L381F |
probably damaging |
Het |
| Ubr2 |
C |
T |
17: 47,254,290 (GRCm39) |
V1454I |
probably benign |
Het |
| V1ra8 |
A |
C |
6: 90,179,944 (GRCm39) |
D49A |
probably damaging |
Het |
| Vmn2r5 |
A |
C |
3: 64,417,014 (GRCm39) |
M48R |
probably benign |
Het |
| Yars1 |
A |
G |
4: 129,099,982 (GRCm39) |
I227V |
probably damaging |
Het |
| Zfp850 |
C |
A |
7: 27,688,480 (GRCm39) |
R576L |
probably benign |
Het |
| Zfpm2 |
T |
A |
15: 40,964,579 (GRCm39) |
F223I |
possibly damaging |
Het |
|
| Other mutations in Or5p4 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01472:Or5p4
|
APN |
7 |
107,680,411 (GRCm39) |
missense |
probably benign |
0.18 |
|
IGL01570:Or5p4
|
APN |
7 |
107,680,480 (GRCm39) |
missense |
probably benign |
0.38 |
|
IGL02619:Or5p4
|
APN |
7 |
107,680,949 (GRCm39) |
utr 3 prime |
probably benign |
|
|
IGL03175:Or5p4
|
APN |
7 |
107,680,925 (GRCm39) |
missense |
probably benign |
|
|
R0401:Or5p4
|
UTSW |
7 |
107,680,079 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
R0932:Or5p4
|
UTSW |
7 |
107,680,727 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1679:Or5p4
|
UTSW |
7 |
107,680,859 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3804:Or5p4
|
UTSW |
7 |
107,680,378 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4532:Or5p4
|
UTSW |
7 |
107,680,756 (GRCm39) |
missense |
probably benign |
0.18 |
|
R4932:Or5p4
|
UTSW |
7 |
107,680,781 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5630:Or5p4
|
UTSW |
7 |
107,680,323 (GRCm39) |
missense |
probably benign |
0.05 |
|
R6155:Or5p4
|
UTSW |
7 |
107,680,493 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6523:Or5p4
|
UTSW |
7 |
107,680,762 (GRCm39) |
missense |
probably benign |
0.34 |
|
R6987:Or5p4
|
UTSW |
7 |
107,680,338 (GRCm39) |
nonsense |
probably null |
|
|
R7378:Or5p4
|
UTSW |
7 |
107,680,399 (GRCm39) |
missense |
not run |
|
|
R7609:Or5p4
|
UTSW |
7 |
107,680,753 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8293:Or5p4
|
UTSW |
7 |
107,680,269 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9322:Or5p4
|
UTSW |
7 |
107,680,727 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9449:Or5p4
|
UTSW |
7 |
107,680,040 (GRCm39) |
missense |
|
|
|
R9659:Or5p4
|
UTSW |
7 |
107,680,745 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9788:Or5p4
|
UTSW |
7 |
107,680,745 (GRCm39) |
missense |
probably damaging |
1.00 |
|
V8831:Or5p4
|
UTSW |
7 |
107,680,742 (GRCm39) |
missense |
probably benign |
0.24 |
|
Z1177:Or5p4
|
UTSW |
7 |
107,680,279 (GRCm39) |
missense |
probably benign |
0.03 |
|
| Predicted Primers |
PCR Primer
(F):5'- AGTGCTACACTACGTGCTATC -3'
(R):5'- ATGCATCCACCCAAATAGGATG -3'
Sequencing Primer
(F):5'- ACACTACGTGCTATCTTATTTGTG -3'
(R):5'- CAAATAGGATGCCCCGAGC -3'
|
| Posted On |
2014-10-02 |
Incidental Mutation