Mutagenetix > Incidental Mutation

Incidental Mutation 'R2207:Il5ra'

239126

Institutional Source

Beutler Lab

Gene Symbol

Il5ra

Ensembl Gene

ENSMUSG00000005364

Gene Name

interleukin 5 receptor, alpha

Synonyms

CDw125, Il5r, IL-5 receptor alpha chain, CD125

MMRRC Submission

040209-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.088) question?

Stock #

R2207 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

106687336-106725998 bp(-) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

C to A at 106689402 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Stop codon at position 397 (E397*)

Ref Sequence

ENSEMBL: ENSMUSP00000144718 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000167925] [ENSMUST00000204659] [ENSMUST00000205004]

AlphaFold

P21183

Predicted Effect

probably null
Transcript: ENSMUST00000167925
AA Change: E397*

SMART Domains

Protein: ENSMUSP00000129781
Gene: ENSMUSG00000005364
AA Change: E397*

Domain	Start	End	E-Value	Type
FN3	27	159	6.27e0	SMART
FN3	236	312	1.28e1	SMART
transmembrane domain	335	357	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000204659
AA Change: E397*

SMART Domains

Protein: ENSMUSP00000144718
Gene: ENSMUSG00000005364
AA Change: E397*

Domain	Start	End	E-Value	Type
FN3	27	159	6.27e0	SMART
FN3	236	312	1.28e1	SMART
transmembrane domain	335	357	N/A	INTRINSIC

Predicted Effect

unknown
Transcript: ENSMUST00000205004
AA Change: L51F

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.5%
20x: 95.9%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is an interleukin 5 specific subunit of a heterodimeric cytokine receptor. The receptor is comprised of a ligand specific alpha subunit and a signal transducing beta subunit shared by the receptors for interleukin 3 (IL3), colony stimulating factor 2 (CSF2/GM-CSF), and interleukin 5 (IL5). The binding of this protein to IL5 depends on the beta subunit. The beta subunit is activated by the ligand binding, and is required for the biological activities of IL5. This protein has been found to interact with syndecan binding protein (syntenin), which is required for IL5 mediated activation of the transcription factor SOX4. Several alternatively spliced transcript variants encoding four distinct isoforms have been reported. [provided by RefSeq, Jul 2011]
PHENOTYPE: Mice homozygous for disruptions in this gene display a generally normal phenotype but with some immune system deficiencies. Mice homozygous for one knock-out allele exhibit increased metastasis of injected B16F10 melanoma cells. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 99 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2410137M14Rik	A	G	17: 37,288,965 (GRCm39)		probably benign	Het
Abcb1b	C	T	5: 8,874,803 (GRCm39)	R488C	probably benign	Het
Adam34	T	C	8: 44,105,274 (GRCm39)	I124V	probably benign	Het
Aicda	T	A	6: 122,538,244 (GRCm39)	V134D	possibly damaging	Het
Akt2	T	A	7: 27,336,625 (GRCm39)		probably null	Het
Aldh1a3	T	C	7: 66,055,769 (GRCm39)	R341G	probably damaging	Het
Ankrd12	G	T	17: 66,338,569 (GRCm39)		probably null	Het
Anxa11	A	G	14: 25,874,721 (GRCm39)	Y244C	probably damaging	Het
Atp2c2	G	A	8: 120,475,048 (GRCm39)	R551Q	probably damaging	Het
B4galt3	C	A	1: 171,101,613 (GRCm39)	H196N	probably damaging	Het
Bcl11a	G	T	11: 24,113,343 (GRCm39)	G229W	probably damaging	Het
Brip1	A	G	11: 85,952,703 (GRCm39)	V1026A	probably benign	Het
Cacna1h	A	T	17: 25,603,987 (GRCm39)	S1282T	probably benign	Het
Calcr	T	C	6: 3,717,133 (GRCm39)	Y109C	probably damaging	Het
Ccdc39	T	C	3: 33,890,882 (GRCm39)	I241V	probably damaging	Het
Ccdc9	A	G	7: 16,018,194 (GRCm39)		probably benign	Het
Cdk17	G	A	10: 93,064,624 (GRCm39)	D298N	probably damaging	Het
Cdkl3	A	G	11: 51,918,020 (GRCm39)	*354W	probably null	Het
Celf6	A	T	9: 59,511,610 (GRCm39)	Y401F	possibly damaging	Het
Clec4a4	C	T	6: 122,990,766 (GRCm39)	L169F	probably damaging	Het
Col14a1	T	C	15: 55,327,082 (GRCm39)	F1411L	unknown	Het
Col4a2	G	T	8: 11,493,352 (GRCm39)	G1354W	probably damaging	Het
Crygs	C	T	16: 22,624,301 (GRCm39)	G102D	possibly damaging	Het
Cst13	A	T	2: 148,665,202 (GRCm39)	R66W	probably damaging	Het
Depp1	G	A	6: 116,628,683 (GRCm39)	V9M	possibly damaging	Het
Dhx8	A	G	11: 101,641,797 (GRCm39)	T632A	probably benign	Het
Disp1	A	G	1: 182,869,906 (GRCm39)	F838S	possibly damaging	Het
Dlg1	A	G	16: 31,672,664 (GRCm39)	H599R	probably benign	Het
Dnah12	T	A	14: 26,503,744 (GRCm39)	V1654E	probably damaging	Het
Dnah5	C	T	15: 28,343,817 (GRCm39)	L2406F	probably benign	Het
Fam98b	C	G	2: 117,098,300 (GRCm39)	R257G	probably damaging	Het
Fbn2	A	T	18: 58,214,471 (GRCm39)	C900*	probably null	Het
Fgf1	A	G	18: 38,980,138 (GRCm39)	Y79H	possibly damaging	Het
Foxn1	C	A	11: 78,249,630 (GRCm39)	A632S	probably benign	Het
Fsip2	T	G	2: 82,807,823 (GRCm39)	S1381A	probably benign	Het
Gtf2b	G	A	3: 142,484,081 (GRCm39)	G85D	probably benign	Het
Gyg1	C	A	3: 20,204,703 (GRCm39)	G161C	probably damaging	Het
Hemgn	G	T	4: 46,396,301 (GRCm39)	L312I	possibly damaging	Het
Hic2	T	C	16: 17,075,324 (GRCm39)	M51T	possibly damaging	Het
Hivep2	C	A	10: 14,004,713 (GRCm39)	T437K	probably benign	Het
Hpx	C	T	7: 105,241,633 (GRCm39)	R287H	probably damaging	Het
Igf2bp3	C	T	6: 49,065,488 (GRCm39)	G468E	possibly damaging	Het
Itfg1	A	T	8: 86,502,827 (GRCm39)	S246R	probably benign	Het
Kdm2a	A	T	19: 4,412,898 (GRCm39)	D29E	probably damaging	Het
Lamc2	T	G	1: 153,009,452 (GRCm39)	E784D	possibly damaging	Het
Lrp2	A	T	2: 69,297,372 (GRCm39)	N3196K	possibly damaging	Het
Lyzl1	T	A	18: 4,181,962 (GRCm39)	C96*	probably null	Het
Maf1	A	G	15: 76,236,718 (GRCm39)	T17A	probably benign	Het
Map1b	T	C	13: 99,567,591 (GRCm39)	D1710G	unknown	Het
Megf8	C	T	7: 25,049,222 (GRCm39)	T1773I	probably damaging	Het
Mei1	T	C	15: 81,987,450 (GRCm39)	M414T	probably benign	Het
Myo15a	A	G	11: 60,396,860 (GRCm39)	N2643S	probably benign	Het
Ndufa9	A	G	6: 126,821,772 (GRCm39)	Y64H	probably damaging	Het
Neb	A	T	2: 52,101,579 (GRCm39)	L4354*	probably null	Het
Nom1	T	A	5: 29,644,972 (GRCm39)	I480N	probably damaging	Het
Nrxn3	C	T	12: 89,315,082 (GRCm39)	T331M	probably damaging	Het
Or1a1	G	T	11: 74,087,150 (GRCm39)	V274L	possibly damaging	Het
Or1j16	G	T	2: 36,530,201 (GRCm39)	R50M	possibly damaging	Het
Or4f14b	A	C	2: 111,775,270 (GRCm39)	F177C	probably damaging	Het
Or51a42	A	G	7: 103,708,612 (GRCm39)	S66P	probably damaging	Het
Pcdhb15	A	T	18: 37,608,075 (GRCm39)	T436S	probably benign	Het
Pcdhb18	T	A	18: 37,624,342 (GRCm39)	N557K	probably damaging	Het
Pcdhb6	T	C	18: 37,468,633 (GRCm39)	M518T	probably benign	Het
Pgm2l1	T	A	7: 99,917,319 (GRCm39)		probably null	Het
Pih1d2	C	A	9: 50,532,379 (GRCm39)	H162N	probably benign	Het
Pitrm1	T	A	13: 6,619,327 (GRCm39)	Y721N	probably damaging	Het
Pla2r1	C	A	2: 60,288,779 (GRCm39)	V618F	probably damaging	Het
Plb1	T	C	5: 32,473,984 (GRCm39)	S599P	possibly damaging	Het
Prkg1	T	C	19: 30,556,260 (GRCm39)	D562G	probably damaging	Het
Proser1	T	G	3: 53,385,812 (GRCm39)	S565A	probably benign	Het
Prx	T	A	7: 27,216,213 (GRCm39)	V238E	probably damaging	Het
Psapl1	T	C	5: 36,362,509 (GRCm39)	I367T	probably damaging	Het
Rc3h1	T	C	1: 160,767,595 (GRCm39)	V128A	probably damaging	Het
Rrm1	T	A	7: 102,091,233 (GRCm39)	M1K	probably null	Het
Rsf1	GCG	GCGACG	7: 97,229,114 (GRCm39)		probably benign	Het
Rsl1	A	G	13: 67,330,892 (GRCm39)	T447A	probably benign	Het
Ryr2	A	G	13: 11,825,823 (GRCm39)	S552P	probably damaging	Het
Sbf1	A	G	15: 89,190,896 (GRCm39)	S225P	possibly damaging	Het
Serpina3c	T	A	12: 104,117,757 (GRCm39)	I194F	probably benign	Het
Setd3	C	T	12: 108,073,544 (GRCm39)	V578M	probably benign	Het
Setx	GTGGCT	GT	2: 29,044,073 (GRCm39)	1814	probably null	Het
Slc6a1	T	A	6: 114,285,632 (GRCm39)	V356E	probably damaging	Het
Slfn1	A	G	11: 83,011,992 (GRCm39)	E36G	possibly damaging	Het
Sorcs1	T	C	19: 50,218,655 (GRCm39)	H609R	possibly damaging	Het
Spag16	A	G	1: 70,764,043 (GRCm39)	H621R	probably benign	Het
Spata31d1e	A	G	13: 59,890,920 (GRCm39)	V300A	probably benign	Het
Tg	G	A	15: 66,553,788 (GRCm39)	G401D	probably benign	Het
Tnxb	A	C	17: 34,928,391 (GRCm39)	T2602P	possibly damaging	Het
Trip11	T	C	12: 101,839,701 (GRCm39)	N1643S	probably benign	Het
Ttn	G	A	2: 76,709,687 (GRCm39)	R1581*	probably null	Het
Ttn	A	T	2: 76,796,155 (GRCm39)	I590K	probably benign	Het
Vmn1r225	A	G	17: 20,722,611 (GRCm39)	I17M	possibly damaging	Het
Vmn1r232	A	G	17: 21,134,465 (GRCm39)	L45P	probably benign	Het
Wdr7	T	A	18: 63,910,678 (GRCm39)	V690E	possibly damaging	Het
Xaf1	A	T	11: 72,194,228 (GRCm39)	E36D	possibly damaging	Het
Zfp131	A	T	13: 120,237,348 (GRCm39)	F303I	probably damaging	Het
Zfp513	T	G	5: 31,357,767 (GRCm39)	K202T	probably damaging	Het
Zfp788	A	T	7: 41,299,064 (GRCm39)	I567F	probably damaging	Het
Zfyve26	A	G	12: 79,292,861 (GRCm39)	V2096A	probably damaging	Het

Other mutations in Il5ra

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00715:Il5ra	APN	6	106,689,435 (GRCm39)	splice site	probably benign
IGL00726:Il5ra	APN	6	106,715,450 (GRCm39)	missense	probably damaging	1.00
IGL01095:Il5ra	APN	6	106,719,605 (GRCm39)	intron	probably benign
IGL01562:Il5ra	APN	6	106,708,865 (GRCm39)	missense	probably benign	0.00
IGL01569:Il5ra	APN	6	106,708,794 (GRCm39)	start codon destroyed	probably null
IGL02346:Il5ra	APN	6	106,719,619 (GRCm39)	missense	probably benign	0.02
IGL02573:Il5ra	APN	6	106,693,712 (GRCm39)	missense	possibly damaging	0.93
IGL02659:Il5ra	APN	6	106,719,644 (GRCm39)	missense	possibly damaging	0.49
R0037:Il5ra	UTSW	6	106,719,647 (GRCm39)	missense	probably damaging	1.00
R0037:Il5ra	UTSW	6	106,719,647 (GRCm39)	missense	probably damaging	1.00
R0294:Il5ra	UTSW	6	106,689,362 (GRCm39)	missense	probably benign	0.41
R0463:Il5ra	UTSW	6	106,708,851 (GRCm39)	missense	probably damaging	0.99
R0478:Il5ra	UTSW	6	106,715,423 (GRCm39)	missense	probably benign
R0597:Il5ra	UTSW	6	106,721,296 (GRCm39)	start codon destroyed	probably null	0.99
R1526:Il5ra	UTSW	6	106,712,781 (GRCm39)	missense	possibly damaging	0.49
R1695:Il5ra	UTSW	6	106,715,335 (GRCm39)	nonsense	probably null
R1888:Il5ra	UTSW	6	106,708,874 (GRCm39)	missense	probably damaging	1.00
R1888:Il5ra	UTSW	6	106,708,874 (GRCm39)	missense	probably damaging	1.00
R2176:Il5ra	UTSW	6	106,715,233 (GRCm39)	missense	probably benign
R2973:Il5ra	UTSW	6	106,718,196 (GRCm39)	missense	probably benign	0.08
R4546:Il5ra	UTSW	6	106,715,459 (GRCm39)	nonsense	probably null
R4842:Il5ra	UTSW	6	106,715,336 (GRCm39)	missense	probably damaging	1.00
R4851:Il5ra	UTSW	6	106,715,432 (GRCm39)	missense	probably benign	0.06
R4911:Il5ra	UTSW	6	106,692,629 (GRCm39)	missense	probably damaging	1.00
R4936:Il5ra	UTSW	6	106,715,123 (GRCm39)	missense	possibly damaging	0.90
R5297:Il5ra	UTSW	6	106,715,095 (GRCm39)	missense	probably benign	0.09
R6035:Il5ra	UTSW	6	106,718,226 (GRCm39)	missense	probably damaging	1.00
R6035:Il5ra	UTSW	6	106,718,226 (GRCm39)	missense	probably damaging	1.00
R8103:Il5ra	UTSW	6	106,692,611 (GRCm39)	missense	possibly damaging	0.87
R8338:Il5ra	UTSW	6	106,689,350 (GRCm39)	missense	probably benign	0.09
R8497:Il5ra	UTSW	6	106,715,066 (GRCm39)	missense	probably benign	0.01
R8936:Il5ra	UTSW	6	106,692,604 (GRCm39)	missense	possibly damaging	0.94
R9397:Il5ra	UTSW	6	106,721,258 (GRCm39)	missense	probably benign	0.10
R9576:Il5ra	UTSW	6	106,712,688 (GRCm39)	missense	probably damaging	1.00
R9583:Il5ra	UTSW	6	106,721,297 (GRCm39)	start codon destroyed	possibly damaging	0.84
R9583:Il5ra	UTSW	6	106,689,331 (GRCm39)	missense	unknown
Z1177:Il5ra	UTSW	6	106,718,095 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- GGTTTGAGTGAGGCATGCAC -3'
(R):5'- GCTTTATGCTTCAAGAAAGGCTG -3'

Sequencing Primer
(F):5'- CTGGTATTAAAGGCGAGCTCCAC -3'
(R):5'- TGACTTTTCCTAGTTTCTAAACAGAC -3'

Posted On

2014-10-02