Mutagenetix > Incidental Mutation

Incidental Mutation 'R2238:Msl2'

240247

Institutional Source

Beutler Lab

Gene Symbol

Msl2

Ensembl Gene

ENSMUSG00000066415

Gene Name

MSL complex subunit 2

Synonyms

Msl2l1, E130103E02Rik, Rnf184

MMRRC Submission

040238-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.964) question?

Stock #

R2238 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

100956154-100981999 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 100978569 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Lysine at position 314 (N314K)

Ref Sequence

ENSEMBL: ENSMUSP00000082270 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000066773] [ENSMUST00000075941] [ENSMUST00000085177] [ENSMUST00000189616]

AlphaFold

Q69ZF8

Predicted Effect

probably benign
Transcript: ENSMUST00000066773

SMART Domains

Protein: ENSMUSP00000069688
Gene: ENSMUSG00000043154

Domain	Start	End	E-Value	Type
Blast:EFh	140	169	1e-9	BLAST
Pfam:EF-hand_7	282	380	2.6e-17	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000075941

SMART Domains

Protein: ENSMUSP00000075327
Gene: ENSMUSG00000043154

Domain	Start	End	E-Value	Type
low complexity region	248	266	N/A	INTRINSIC
Blast:EFh	760	789	1e-9	BLAST
Pfam:EF-hand_7	902	1000	2.5e-17	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000085177
AA Change: N314K

PolyPhen 2 Score 0.411 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000082270
Gene: ENSMUSG00000066415
AA Change: N314K

Domain	Start	End	E-Value	Type
Pfam:zf-RING_10	42	111	2.8e-36	PFAM
low complexity region	265	281	N/A	INTRINSIC
low complexity region	340	351	N/A	INTRINSIC
low complexity region	406	424	N/A	INTRINSIC
CXC	457	504	1.6e-9	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000189616

SMART Domains

Protein: ENSMUSP00000139396
Gene: ENSMUSG00000066415

Domain	Start	End	E-Value	Type
PDB:4B86\|L	1	47	2e-28	PDB

Meta Mutation Damage Score

0.0596

Coding Region Coverage

1x: 99.1%
3x: 98.6%
10x: 97.3%
20x: 95.0%

Validation Efficiency

98% (59/60)

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aadacl4fm1	T	A	4: 144,246,469 (GRCm39)	V5E	possibly damaging	Het
Acaca	T	C	11: 84,282,331 (GRCm39)		probably benign	Het
Adam18	T	C	8: 25,136,303 (GRCm39)	E406G	probably benign	Het
Adgrl4	A	T	3: 151,205,779 (GRCm39)	I164F	probably damaging	Het
Arhgap36	G	T	X: 48,582,282 (GRCm39)	V60L	possibly damaging	Het
Bmi1	T	C	2: 18,688,225 (GRCm39)		probably benign	Het
Carf	T	C	1: 60,187,193 (GRCm39)	S599P	probably benign	Het
Cdc37	G	A	9: 21,053,829 (GRCm39)	Q176*	probably null	Het
Clca3a1	T	A	3: 144,457,766 (GRCm39)	I373F	possibly damaging	Het
Clnk	A	G	5: 38,921,694 (GRCm39)		probably benign	Het
Cnot1	T	C	8: 96,496,149 (GRCm39)	I342V	probably benign	Het
Dact2	A	T	17: 14,417,312 (GRCm39)	L296Q	probably damaging	Het
Dctn2	C	T	10: 127,112,257 (GRCm39)	T123I	probably damaging	Het
Deup1	A	C	9: 15,486,597 (GRCm39)	I455S	probably damaging	Het
Dnmbp	A	G	19: 43,857,303 (GRCm39)	V957A	possibly damaging	Het
Emilin2	T	C	17: 71,581,734 (GRCm39)	R331G	possibly damaging	Het
Eomes	A	G	9: 118,311,359 (GRCm39)	D394G	probably damaging	Het
Epn1	A	G	7: 5,100,601 (GRCm39)	N518S	probably damaging	Het
Gbf1	T	C	19: 46,152,057 (GRCm39)	I30T	probably benign	Het
Gcc1	A	G	6: 28,420,462 (GRCm39)	V285A	probably benign	Het
Gopc	T	C	10: 52,229,499 (GRCm39)	H188R	probably damaging	Het
Herc6	A	G	6: 57,631,386 (GRCm39)	N693D	probably benign	Het
Hipk2	A	G	6: 38,706,850 (GRCm39)		probably benign	Het
Htatsf1	G	T	X: 56,111,864 (GRCm39)	D642Y	unknown	Het
Ints1	G	A	5: 139,750,955 (GRCm39)	T814M	possibly damaging	Het
Kdm6a	T	C	X: 18,065,476 (GRCm39)	F104S	probably damaging	Het
Kdr	T	A	5: 76,110,179 (GRCm39)	Y936F	possibly damaging	Het
Ly6k	T	C	15: 74,669,018 (GRCm39)	E87G	probably benign	Het
Lyst	A	G	13: 13,917,848 (GRCm39)	N3303D	probably benign	Het
Mindy4	T	C	6: 55,278,055 (GRCm39)	F633S	probably damaging	Het
Ncapd3	A	G	9: 26,978,320 (GRCm39)	T840A	probably benign	Het
Neil3	T	C	8: 54,052,311 (GRCm39)	D429G	possibly damaging	Het
Nt5c1b	C	A	12: 10,425,558 (GRCm39)	T309K	probably damaging	Het
Nt5c1b	A	G	12: 10,440,108 (GRCm39)	Y550C	probably damaging	Het
Or10v5	T	C	19: 11,805,814 (GRCm39)	D192G	probably damaging	Het
Pabpc4l	A	C	3: 46,401,137 (GRCm39)	V169G	probably damaging	Het
Pcgf5	A	T	19: 36,414,754 (GRCm39)	N105I	probably damaging	Het
Phka2	A	G	X: 159,324,408 (GRCm39)	E254G	probably damaging	Het
Pik3cb	A	G	9: 98,923,081 (GRCm39)	Y984H	probably damaging	Het
Ptprz1	A	T	6: 22,987,376 (GRCm39)	Q387L	probably damaging	Het
Rassf8	T	C	6: 145,762,910 (GRCm39)	V419A	probably damaging	Het
Rnf148	T	C	6: 23,654,345 (GRCm39)	Y217C	probably benign	Het
Sec24d	T	A	3: 123,143,543 (GRCm39)		probably null	Het
Sesn3	T	C	9: 14,219,761 (GRCm39)	V50A	probably benign	Het
Sgcd	T	C	11: 47,023,509 (GRCm39)	N99D	possibly damaging	Het
Sncaip	T	C	18: 53,001,619 (GRCm39)	S47P	probably damaging	Het
Sp2	C	T	11: 96,846,762 (GRCm39)	C527Y	probably damaging	Het
Spata4	A	C	8: 55,055,664 (GRCm39)	K185T	probably benign	Het
Spin2c	A	G	X: 152,616,672 (GRCm39)	I162V	probably damaging	Het
Srcin1	T	C	11: 97,425,645 (GRCm39)	T471A	probably benign	Het
Stac	G	A	9: 111,519,190 (GRCm39)		probably benign	Het
Tcaf3	A	G	6: 42,570,262 (GRCm39)	Y497H	probably benign	Het
Tmem40	C	T	6: 115,708,038 (GRCm39)	W150*	probably null	Het
Tmem59l	T	C	8: 70,937,772 (GRCm39)	T203A	probably damaging	Het
Tnfsf11	A	T	14: 78,537,421 (GRCm39)	S81T	possibly damaging	Het
Topaz1	C	T	9: 122,600,212 (GRCm39)	T984I	probably benign	Het
Vmn1r204	A	G	13: 22,740,993 (GRCm39)	H208R	probably benign	Het
Vmn2r98	T	A	17: 19,286,213 (GRCm39)	M237K	probably damaging	Het

Other mutations in Msl2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00543:Msl2	APN	9	100,978,269 (GRCm39)	missense	probably benign	0.13
IGL02496:Msl2	APN	9	100,977,854 (GRCm39)	missense	possibly damaging	0.93
IGL02798:Msl2	APN	9	100,957,430 (GRCm39)	missense	probably benign	0.06
IGL03235:Msl2	APN	9	100,977,967 (GRCm39)	missense	probably benign	0.03
anguished	UTSW	9	100,979,174 (GRCm39)	missense	possibly damaging	0.66
Appalled	UTSW	9	100,978,042 (GRCm39)	missense	probably benign
Crestfallen	UTSW	9	100,978,290 (GRCm39)	nonsense	probably null
R0497:Msl2	UTSW	9	100,978,493 (GRCm39)	missense	probably benign	0.00
R1288:Msl2	UTSW	9	100,979,308 (GRCm39)	missense	probably benign	0.01
R2015:Msl2	UTSW	9	100,957,304 (GRCm39)	start gained	probably benign
R2038:Msl2	UTSW	9	100,979,183 (GRCm39)	missense	probably damaging	1.00
R4393:Msl2	UTSW	9	100,978,676 (GRCm39)	missense	probably damaging	1.00
R4827:Msl2	UTSW	9	100,979,350 (GRCm39)	missense	probably benign	0.00
R5290:Msl2	UTSW	9	100,978,606 (GRCm39)	splice site	probably null
R5567:Msl2	UTSW	9	100,978,936 (GRCm39)	missense	possibly damaging	0.67
R5934:Msl2	UTSW	9	100,979,017 (GRCm39)	missense	probably damaging	1.00
R5940:Msl2	UTSW	9	100,978,290 (GRCm39)	nonsense	probably null
R6339:Msl2	UTSW	9	100,978,949 (GRCm39)	missense	probably benign
R6736:Msl2	UTSW	9	100,978,201 (GRCm39)	missense	probably damaging	0.99
R6950:Msl2	UTSW	9	100,979,174 (GRCm39)	missense	possibly damaging	0.66
R6971:Msl2	UTSW	9	100,978,042 (GRCm39)	missense	probably benign
R7022:Msl2	UTSW	9	100,957,335 (GRCm39)	missense	possibly damaging	0.91
R7408:Msl2	UTSW	9	100,979,316 (GRCm39)	missense	probably benign	0.08
R7955:Msl2	UTSW	9	100,979,354 (GRCm39)	missense	possibly damaging	0.69
R8069:Msl2	UTSW	9	100,978,159 (GRCm39)	missense	probably benign
R8281:Msl2	UTSW	9	100,978,894 (GRCm39)	missense	probably benign	0.10
R8437:Msl2	UTSW	9	100,978,167 (GRCm39)	missense	probably benign	0.25
R9162:Msl2	UTSW	9	100,978,928 (GRCm39)	missense	probably benign
R9675:Msl2	UTSW	9	100,978,555 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- GTAGCCACTGACTTGTGCTC -3'
(R):5'- CTTCACAGTCACAGGAGCAG -3'

Sequencing Primer
(F):5'- ACTGACTTGTGCTCCACAGG -3'
(R):5'- CAGTCACAGGAGCAGATGCC -3'

Posted On

2014-10-15