Mutagenetix > Incidental Mutation

Incidental Mutation 'R2249:Ptk6'

240766

Institutional Source

Beutler Lab

Gene Symbol

Ptk6

Ensembl Gene

ENSMUSG00000038751

Gene Name

PTK6 protein tyrosine kinase 6

Synonyms

Tksk, Sik

MMRRC Submission

040249-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R2249 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

180836917-180845408 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 180838173 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Glutamine at position 363 (H363Q)

Ref Sequence

ENSEMBL: ENSMUSP00000016511 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000016511]

AlphaFold

Q64434

Predicted Effect

probably benign
Transcript: ENSMUST00000016511
AA Change: H363Q

PolyPhen 2 Score 0.027 (Sensitivity: 0.95; Specificity: 0.81)

SMART Domains

Protein: ENSMUSP00000016511
Gene: ENSMUSG00000038751
AA Change: H363Q

Domain	Start	End	E-Value	Type
SH3	11	71	2e-16	SMART
SH2	76	161	1.01e-28	SMART
TyrKc	191	441	1.12e-131	SMART

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.2%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a cytoplasmic nonreceptor protein kinase which may function as an intracellular signal transducer in epithelial tissues. Overexpression of this gene in mammary epithelial cells leads to sensitization of the cells to epidermal growth factor and results in a partially transformed phenotype. Expression of this gene has been detected at low levels in some breast tumors but not in normal breast tissue. The encoded protein has been shown to undergo autophosphorylation. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2012]
PHENOTYPE: Mice homozygous for a null allele display increased villus length in the jejunum and ileum and increased villus epithelial cell proliferation. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acvr1b	G	A	15: 101,100,975 (GRCm39)	R379Q	probably null	Het
Adam23	C	T	1: 63,574,335 (GRCm39)	Q276*	probably null	Het
Apob	A	T	12: 8,057,499 (GRCm39)	S1961C	probably damaging	Het
Atxn7l1	C	T	12: 33,408,839 (GRCm39)	P334S	probably damaging	Het
Ccnb1	T	C	13: 100,917,827 (GRCm39)	M258V	possibly damaging	Het
Cd34	A	C	1: 194,630,260 (GRCm39)	T65P	possibly damaging	Het
Cog6	A	G	3: 52,907,900 (GRCm39)		probably null	Het
Cp	T	C	3: 20,041,734 (GRCm39)	M953T	probably damaging	Het
Cwc27	C	T	13: 104,768,130 (GRCm39)	R455Q	unknown	Het
Dhx57	A	T	17: 80,588,663 (GRCm39)	D63E	probably damaging	Het
Elapor1	A	T	3: 108,378,726 (GRCm39)	Y409*	probably null	Het
Flt4	T	A	11: 49,536,786 (GRCm39)	M1252K	possibly damaging	Het
Gfral	C	T	9: 76,100,631 (GRCm39)	C269Y	probably damaging	Het
Itih4	C	T	14: 30,621,351 (GRCm39)	Q788*	probably null	Het
Kif18b	A	G	11: 102,803,214 (GRCm39)	S499P	probably benign	Het
Map1a	G	C	2: 121,130,768 (GRCm39)	R528P	probably damaging	Het
Map3k5	T	C	10: 20,003,443 (GRCm39)	F1152L	probably damaging	Het
Marveld2	T	C	13: 100,748,599 (GRCm39)	D160G	probably benign	Het
Mtcl2	A	T	2: 156,882,013 (GRCm39)	C680S	probably benign	Het
Mug1	A	T	6: 121,847,469 (GRCm39)	M616L	probably benign	Het
Ndst4	A	T	3: 125,231,823 (GRCm39)	I131F	probably benign	Het
Neto1	G	T	18: 86,479,399 (GRCm39)	A196S	probably benign	Het
Notum	A	G	11: 120,545,237 (GRCm39)	F441L	probably benign	Het
Nsmce4a	A	G	7: 130,140,769 (GRCm39)	I239T	probably benign	Het
Or51g1	A	T	7: 102,633,647 (GRCm39)	N241K	possibly damaging	Het
Or52z14	T	A	7: 103,252,943 (GRCm39)	D27E	probably benign	Het
Or5d35	A	T	2: 87,855,707 (GRCm39)	I214F	probably damaging	Het
Or6s1	T	A	14: 51,307,870 (GRCm39)	K327*	probably null	Het
Or6x1	A	T	9: 40,098,980 (GRCm39)	T190S	possibly damaging	Het
Or8k40	A	G	2: 86,584,398 (GRCm39)	M228T	probably damaging	Het
Pde4dip	A	T	3: 97,700,841 (GRCm39)	V221D	probably damaging	Het
Pkp1	T	C	1: 135,808,545 (GRCm39)	Y474C	probably damaging	Het
Rb1cc1	T	C	1: 6,342,948 (GRCm39)	W187R	probably damaging	Het
Rbfox3	A	T	11: 118,394,564 (GRCm39)	F132L	probably damaging	Het
Rcl1	A	T	19: 29,099,268 (GRCm39)	I188F	possibly damaging	Het
Scfd1	T	A	12: 51,462,299 (GRCm39)	S385T	possibly damaging	Het
Sema6d	A	G	2: 124,501,508 (GRCm39)	E483G	possibly damaging	Het
Semp2l2b	T	C	10: 21,943,015 (GRCm39)	I322V	possibly damaging	Het
Sipa1l1	T	C	12: 82,388,890 (GRCm39)	V372A	probably benign	Het
Slc17a6	G	A	7: 51,317,654 (GRCm39)	G429D	probably damaging	Het
Slc22a5	A	G	11: 53,774,532 (GRCm39)	V151A	possibly damaging	Het
Spidr	T	C	16: 15,936,787 (GRCm39)	D106G	probably damaging	Het
Tekt3	A	T	11: 62,974,778 (GRCm39)	T366S	probably benign	Het
Trpm3	T	C	19: 22,710,398 (GRCm39)	M281T	probably benign	Het
Ttn	A	G	2: 76,782,485 (GRCm39)	V917A	probably damaging	Het
Tubgcp4	A	T	2: 121,014,110 (GRCm39)	D221V	possibly damaging	Het
Ubr4	C	T	4: 139,176,232 (GRCm39)	R3153W	probably damaging	Het
Vmn1r89	A	C	7: 12,954,187 (GRCm39)	T308P	possibly damaging	Het
Vmn2r59	A	G	7: 41,708,326 (GRCm39)	I27T	probably benign	Het
Vps13c	T	G	9: 67,895,335 (GRCm39)		probably null	Het
Zfp142	A	G	1: 74,606,191 (GRCm39)	V1793A	probably damaging	Het
Zfp472	T	A	17: 33,197,109 (GRCm39)	C395S	possibly damaging	Het

Other mutations in Ptk6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00392:Ptk6	APN	2	180,837,611 (GRCm39)	missense	probably benign	0.00
IGL01630:Ptk6	APN	2	180,838,859 (GRCm39)	missense	probably damaging	0.99
IGL01862:Ptk6	APN	2	180,841,433 (GRCm39)	missense	probably benign	0.00
IGL02231:Ptk6	APN	2	180,838,794 (GRCm39)	missense	probably damaging	1.00
IGL02965:Ptk6	APN	2	180,840,861 (GRCm39)	splice site	probably benign
R0115:Ptk6	UTSW	2	180,844,320 (GRCm39)	start gained	probably benign
R0139:Ptk6	UTSW	2	180,838,724 (GRCm39)	splice site	probably benign
R0245:Ptk6	UTSW	2	180,844,284 (GRCm39)	missense	probably benign
R0358:Ptk6	UTSW	2	180,840,315 (GRCm39)	missense	probably benign	0.01
R0416:Ptk6	UTSW	2	180,844,101 (GRCm39)	missense	possibly damaging	0.94
R0454:Ptk6	UTSW	2	180,844,075 (GRCm39)	missense	possibly damaging	0.86
R0470:Ptk6	UTSW	2	180,837,732 (GRCm39)	missense	probably benign
R0481:Ptk6	UTSW	2	180,844,320 (GRCm39)	start gained	probably benign
R1147:Ptk6	UTSW	2	180,837,590 (GRCm39)	missense	probably benign	0.23
R1147:Ptk6	UTSW	2	180,837,590 (GRCm39)	missense	probably benign	0.23
R1234:Ptk6	UTSW	2	180,844,233 (GRCm39)	missense	possibly damaging	0.94
R4842:Ptk6	UTSW	2	180,838,784 (GRCm39)	missense	possibly damaging	0.89
R5568:Ptk6	UTSW	2	180,841,488 (GRCm39)	missense	possibly damaging	0.47
R5806:Ptk6	UTSW	2	180,841,523 (GRCm39)	missense	possibly damaging	0.95
R6017:Ptk6	UTSW	2	180,837,605 (GRCm39)	missense	probably benign	0.32
R6285:Ptk6	UTSW	2	180,838,886 (GRCm39)	missense	probably null	1.00
R6293:Ptk6	UTSW	2	180,840,253 (GRCm39)	missense	probably damaging	1.00
R6468:Ptk6	UTSW	2	180,840,895 (GRCm39)	missense	probably benign
R7369:Ptk6	UTSW	2	180,840,254 (GRCm39)	missense	possibly damaging	0.86
R8256:Ptk6	UTSW	2	180,837,633 (GRCm39)	nonsense	probably null
R9335:Ptk6	UTSW	2	180,844,146 (GRCm39)	missense	probably damaging	1.00
R9439:Ptk6	UTSW	2	180,840,206 (GRCm39)	missense	possibly damaging	0.75
R9500:Ptk6	UTSW	2	180,837,566 (GRCm39)	missense	probably benign	0.07
X0062:Ptk6	UTSW	2	180,844,116 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AAAAGCATGCTCCCAGATGC -3'
(R):5'- CCTTGGAGTCCATGCTTGTC -3'

Sequencing Primer
(F):5'- TCCCAGATGCTCGAGGAATG -3'
(R):5'- GCTTGTCAGTGCTACACAAG -3'

Posted On

2014-10-15