Incidental Mutation 'R2221:Ctu2'
ID |
241497 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Ctu2
|
Ensembl Gene |
ENSMUSG00000049482 |
Gene Name |
cytosolic thiouridylase subunit 2 |
Synonyms |
2310061F22Rik |
MMRRC Submission |
040223-MU
|
Accession Numbers |
|
Essential gene? |
Essential
(E-score: 1.000)
|
Stock # |
R2221 (G1)
|
Quality Score |
191 |
Status
|
Validated
|
Chromosome |
8 |
Chromosomal Location |
123202882-123209831 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to G
at 123207649 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Glutamic Acid to Glycine
at position 375
(E375G)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000112113
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000014614]
[ENSMUST00000067252]
[ENSMUST00000116412]
[ENSMUST00000127664]
[ENSMUST00000128383]
[ENSMUST00000151855]
[ENSMUST00000146634]
[ENSMUST00000156333]
[ENSMUST00000136253]
[ENSMUST00000134127]
|
AlphaFold |
Q3U308 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000014614
|
SMART Domains |
Protein: ENSMUSP00000014614 Gene: ENSMUSG00000014470
Domain | Start | End | E-Value | Type |
RING
|
33 |
72 |
3.29e-5 |
SMART |
ZnF_C2H2
|
150 |
173 |
7.05e-1 |
SMART |
ZnF_C2H2
|
180 |
208 |
9.56e1 |
SMART |
low complexity region
|
222 |
236 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000067252
|
SMART Domains |
Protein: ENSMUSP00000089777 Gene: ENSMUSG00000014444
Domain | Start | End | E-Value | Type |
transmembrane domain
|
5 |
24 |
N/A |
INTRINSIC |
transmembrane domain
|
29 |
46 |
N/A |
INTRINSIC |
transmembrane domain
|
59 |
81 |
N/A |
INTRINSIC |
transmembrane domain
|
121 |
143 |
N/A |
INTRINSIC |
low complexity region
|
156 |
169 |
N/A |
INTRINSIC |
transmembrane domain
|
211 |
233 |
N/A |
INTRINSIC |
transmembrane domain
|
248 |
270 |
N/A |
INTRINSIC |
transmembrane domain
|
316 |
333 |
N/A |
INTRINSIC |
low complexity region
|
353 |
368 |
N/A |
INTRINSIC |
low complexity region
|
396 |
408 |
N/A |
INTRINSIC |
transmembrane domain
|
433 |
455 |
N/A |
INTRINSIC |
transmembrane domain
|
468 |
490 |
N/A |
INTRINSIC |
transmembrane domain
|
513 |
535 |
N/A |
INTRINSIC |
internal_repeat_1
|
541 |
658 |
5.31e-5 |
PROSPERO |
transmembrane domain
|
685 |
707 |
N/A |
INTRINSIC |
low complexity region
|
738 |
753 |
N/A |
INTRINSIC |
transmembrane domain
|
817 |
839 |
N/A |
INTRINSIC |
transmembrane domain
|
844 |
866 |
N/A |
INTRINSIC |
low complexity region
|
940 |
952 |
N/A |
INTRINSIC |
transmembrane domain
|
979 |
1001 |
N/A |
INTRINSIC |
transmembrane domain
|
1005 |
1022 |
N/A |
INTRINSIC |
transmembrane domain
|
1035 |
1057 |
N/A |
INTRINSIC |
transmembrane domain
|
1154 |
1171 |
N/A |
INTRINSIC |
transmembrane domain
|
1178 |
1197 |
N/A |
INTRINSIC |
Pfam:PIEZO
|
1229 |
1458 |
1.1e-97 |
PFAM |
low complexity region
|
1475 |
1486 |
N/A |
INTRINSIC |
internal_repeat_1
|
1646 |
1752 |
5.31e-5 |
PROSPERO |
low complexity region
|
1905 |
1921 |
N/A |
INTRINSIC |
transmembrane domain
|
1976 |
1998 |
N/A |
INTRINSIC |
transmembrane domain
|
2018 |
2038 |
N/A |
INTRINSIC |
transmembrane domain
|
2045 |
2067 |
N/A |
INTRINSIC |
transmembrane domain
|
2077 |
2094 |
N/A |
INTRINSIC |
Pfam:Piezo_RRas_bdg
|
2126 |
2544 |
3.2e-157 |
PFAM |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000116412
AA Change: E375G
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000112113 Gene: ENSMUSG00000049482 AA Change: E375G
Domain | Start | End | E-Value | Type |
low complexity region
|
11 |
24 |
N/A |
INTRINSIC |
SCOP:d1sur__
|
47 |
153 |
1e-3 |
SMART |
Pfam:CTU2
|
347 |
470 |
2.3e-21 |
PFAM |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000123671
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000126553
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000127664
|
SMART Domains |
Protein: ENSMUSP00000118564 Gene: ENSMUSG00000092329
Domain | Start | End | E-Value | Type |
Pfam:Glycos_transf_2
|
104 |
287 |
7.4e-31 |
PFAM |
Pfam:Glyco_transf_7C
|
261 |
331 |
4.9e-8 |
PFAM |
RICIN
|
406 |
531 |
9.28e-27 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000128383
|
SMART Domains |
Protein: ENSMUSP00000116194 Gene: ENSMUSG00000014444
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
26 |
N/A |
INTRINSIC |
transmembrane domain
|
31 |
53 |
N/A |
INTRINSIC |
transmembrane domain
|
75 |
97 |
N/A |
INTRINSIC |
transmembrane domain
|
143 |
165 |
N/A |
INTRINSIC |
transmembrane domain
|
169 |
188 |
N/A |
INTRINSIC |
transmembrane domain
|
195 |
217 |
N/A |
INTRINSIC |
transmembrane domain
|
247 |
269 |
N/A |
INTRINSIC |
low complexity region
|
300 |
315 |
N/A |
INTRINSIC |
transmembrane domain
|
379 |
401 |
N/A |
INTRINSIC |
transmembrane domain
|
406 |
428 |
N/A |
INTRINSIC |
low complexity region
|
502 |
514 |
N/A |
INTRINSIC |
transmembrane domain
|
541 |
563 |
N/A |
INTRINSIC |
transmembrane domain
|
567 |
584 |
N/A |
INTRINSIC |
transmembrane domain
|
597 |
619 |
N/A |
INTRINSIC |
transmembrane domain
|
716 |
733 |
N/A |
INTRINSIC |
transmembrane domain
|
740 |
759 |
N/A |
INTRINSIC |
transmembrane domain
|
774 |
796 |
N/A |
INTRINSIC |
transmembrane domain
|
803 |
820 |
N/A |
INTRINSIC |
low complexity region
|
848 |
859 |
N/A |
INTRINSIC |
coiled coil region
|
895 |
926 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000151855
AA Change: E375G
PolyPhen 2
Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
|
SMART Domains |
Protein: ENSMUSP00000133622 Gene: ENSMUSG00000049482 AA Change: E375G
Domain | Start | End | E-Value | Type |
low complexity region
|
11 |
24 |
N/A |
INTRINSIC |
SCOP:d1sur__
|
47 |
153 |
9e-4 |
SMART |
Pfam:DUF2392
|
277 |
377 |
1.7e-30 |
PFAM |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000128472
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000152596
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000154099
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000155803
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000134304
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000131934
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000212499
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000149925
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000146634
|
SMART Domains |
Protein: ENSMUSP00000119931 Gene: ENSMUSG00000049482
Domain | Start | End | E-Value | Type |
low complexity region
|
11 |
24 |
N/A |
INTRINSIC |
low complexity region
|
78 |
87 |
N/A |
INTRINSIC |
low complexity region
|
96 |
104 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000156333
|
SMART Domains |
Protein: ENSMUSP00000114584 Gene: ENSMUSG00000014444
Domain | Start | End | E-Value | Type |
transmembrane domain
|
5 |
24 |
N/A |
INTRINSIC |
transmembrane domain
|
29 |
46 |
N/A |
INTRINSIC |
transmembrane domain
|
59 |
81 |
N/A |
INTRINSIC |
transmembrane domain
|
121 |
143 |
N/A |
INTRINSIC |
low complexity region
|
157 |
170 |
N/A |
INTRINSIC |
transmembrane domain
|
212 |
234 |
N/A |
INTRINSIC |
transmembrane domain
|
249 |
271 |
N/A |
INTRINSIC |
transmembrane domain
|
317 |
334 |
N/A |
INTRINSIC |
low complexity region
|
354 |
369 |
N/A |
INTRINSIC |
low complexity region
|
397 |
409 |
N/A |
INTRINSIC |
transmembrane domain
|
434 |
456 |
N/A |
INTRINSIC |
transmembrane domain
|
469 |
491 |
N/A |
INTRINSIC |
transmembrane domain
|
514 |
536 |
N/A |
INTRINSIC |
internal_repeat_1
|
542 |
659 |
4.88e-5 |
PROSPERO |
transmembrane domain
|
686 |
708 |
N/A |
INTRINSIC |
low complexity region
|
739 |
754 |
N/A |
INTRINSIC |
transmembrane domain
|
818 |
840 |
N/A |
INTRINSIC |
transmembrane domain
|
845 |
867 |
N/A |
INTRINSIC |
low complexity region
|
941 |
953 |
N/A |
INTRINSIC |
transmembrane domain
|
980 |
1002 |
N/A |
INTRINSIC |
transmembrane domain
|
1006 |
1023 |
N/A |
INTRINSIC |
transmembrane domain
|
1036 |
1058 |
N/A |
INTRINSIC |
transmembrane domain
|
1155 |
1172 |
N/A |
INTRINSIC |
transmembrane domain
|
1179 |
1198 |
N/A |
INTRINSIC |
Pfam:PIEZO
|
1230 |
1459 |
2.3e-94 |
PFAM |
low complexity region
|
1476 |
1487 |
N/A |
INTRINSIC |
internal_repeat_1
|
1647 |
1753 |
4.88e-5 |
PROSPERO |
low complexity region
|
1906 |
1922 |
N/A |
INTRINSIC |
transmembrane domain
|
1977 |
1999 |
N/A |
INTRINSIC |
transmembrane domain
|
2019 |
2039 |
N/A |
INTRINSIC |
transmembrane domain
|
2046 |
2068 |
N/A |
INTRINSIC |
transmembrane domain
|
2078 |
2095 |
N/A |
INTRINSIC |
Pfam:Piezo_RRas_bdg
|
2127 |
2545 |
8.7e-154 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000136253
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000134127
|
SMART Domains |
Protein: ENSMUSP00000119237 Gene: ENSMUSG00000049482
Domain | Start | End | E-Value | Type |
low complexity region
|
11 |
23 |
N/A |
INTRINSIC |
SCOP:d1sur__
|
25 |
128 |
4e-4 |
SMART |
|
Meta Mutation Damage Score |
0.6840 |
Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.2%
- 20x: 94.8%
|
Validation Efficiency |
100% (58/58) |
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein which is involved in the post-transcriptional modification of transfer RNAs (tRNAs). The encoded protein plays a role in thiolation of uridine residue present at the wobble position in a subset of tRNAs, resulting in enhanced codon reading accuracy. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jan 2016]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 56 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Adamtsl1 |
A |
C |
4: 86,306,762 (GRCm39) |
D1392A |
probably benign |
Het |
Afdn |
T |
C |
17: 14,103,999 (GRCm39) |
|
probably benign |
Het |
Aph1b |
A |
T |
9: 66,691,921 (GRCm39) |
M121K |
probably damaging |
Het |
Aspg |
G |
A |
12: 112,080,868 (GRCm39) |
A120T |
probably damaging |
Het |
Bicd1 |
A |
G |
6: 149,418,503 (GRCm39) |
T725A |
probably damaging |
Het |
Cd1d2 |
A |
T |
3: 86,895,847 (GRCm39) |
I292F |
probably damaging |
Het |
Cdcp3 |
A |
T |
7: 130,849,186 (GRCm39) |
|
probably null |
Het |
Cdk13 |
A |
G |
13: 17,894,120 (GRCm39) |
V495A |
probably damaging |
Het |
Cfd |
A |
T |
10: 79,728,039 (GRCm39) |
|
probably null |
Het |
Col9a2 |
C |
G |
4: 120,911,455 (GRCm39) |
R599G |
probably damaging |
Het |
Cradd |
A |
C |
10: 95,011,735 (GRCm39) |
V135G |
probably benign |
Het |
Cry1 |
A |
G |
10: 84,979,617 (GRCm39) |
C460R |
probably damaging |
Het |
Dym |
T |
G |
18: 75,363,236 (GRCm39) |
I580S |
probably damaging |
Het |
Eif3e |
A |
G |
15: 43,114,943 (GRCm39) |
L411P |
possibly damaging |
Het |
Emsy |
T |
C |
7: 98,239,982 (GRCm39) |
E1091G |
possibly damaging |
Het |
Enkur |
A |
G |
2: 21,194,130 (GRCm39) |
|
probably benign |
Het |
Fam184a |
G |
A |
10: 53,531,175 (GRCm39) |
T733M |
probably damaging |
Het |
Frem2 |
G |
A |
3: 53,424,278 (GRCm39) |
A3053V |
probably benign |
Het |
Gbgt1 |
T |
C |
2: 28,388,435 (GRCm39) |
L40P |
probably damaging |
Het |
Gm5174 |
T |
A |
10: 86,492,372 (GRCm39) |
|
noncoding transcript |
Het |
Gys2 |
G |
T |
6: 142,402,148 (GRCm39) |
D230E |
probably damaging |
Het |
Herc2 |
T |
A |
7: 55,818,766 (GRCm39) |
|
probably null |
Het |
Hps3 |
A |
T |
3: 20,056,527 (GRCm39) |
S815R |
probably benign |
Het |
Igf1r |
C |
A |
7: 67,851,710 (GRCm39) |
S983R |
probably damaging |
Het |
Itsn1 |
T |
A |
16: 91,650,656 (GRCm39) |
|
probably benign |
Het |
Kcnc2 |
A |
G |
10: 112,292,431 (GRCm39) |
N91D |
probably damaging |
Het |
Kif28 |
C |
A |
1: 179,560,676 (GRCm39) |
A210S |
possibly damaging |
Het |
Klri2 |
T |
A |
6: 129,717,272 (GRCm39) |
Q37L |
probably damaging |
Het |
Lrrc38 |
T |
A |
4: 143,096,419 (GRCm39) |
C243* |
probably null |
Het |
Map3k5 |
T |
C |
10: 19,943,666 (GRCm39) |
V590A |
possibly damaging |
Het |
Mdn1 |
C |
A |
4: 32,763,306 (GRCm39) |
F5135L |
probably benign |
Het |
Megf11 |
G |
A |
9: 64,567,713 (GRCm39) |
G401S |
possibly damaging |
Het |
Mst1r |
T |
C |
9: 107,785,547 (GRCm39) |
F402L |
probably damaging |
Het |
Ntrk3 |
T |
C |
7: 77,848,600 (GRCm39) |
I759V |
probably damaging |
Het |
Nup188 |
T |
C |
2: 30,226,936 (GRCm39) |
|
probably benign |
Het |
Or4a71 |
C |
T |
2: 89,358,281 (GRCm39) |
V158I |
probably benign |
Het |
Or8b12i |
T |
C |
9: 20,082,388 (GRCm39) |
S160G |
possibly damaging |
Het |
Prdm2 |
T |
C |
4: 142,861,469 (GRCm39) |
N607S |
possibly damaging |
Het |
Prl2a1 |
T |
A |
13: 27,990,369 (GRCm39) |
|
probably null |
Het |
Serpina9 |
T |
A |
12: 103,964,523 (GRCm39) |
I305F |
probably damaging |
Het |
Setx |
GTGGCT |
GT |
2: 29,044,073 (GRCm39) |
1814 |
probably null |
Het |
Slc19a1 |
C |
T |
10: 76,878,320 (GRCm39) |
T285I |
probably benign |
Het |
Snap91 |
T |
C |
9: 86,674,580 (GRCm39) |
T544A |
possibly damaging |
Het |
Srgap3 |
A |
G |
6: 112,923,454 (GRCm39) |
S2P |
probably damaging |
Het |
Tcof1 |
A |
G |
18: 60,970,973 (GRCm39) |
V210A |
possibly damaging |
Het |
Tex261 |
A |
G |
6: 83,748,497 (GRCm39) |
I136T |
probably benign |
Het |
Trpa1 |
A |
T |
1: 14,973,480 (GRCm39) |
F279L |
probably null |
Het |
Ttc39b |
T |
C |
4: 83,150,999 (GRCm39) |
N532S |
probably benign |
Het |
Ttn |
T |
C |
2: 76,572,438 (GRCm39) |
T26152A |
probably damaging |
Het |
Ube2w |
A |
G |
1: 16,668,183 (GRCm39) |
S97P |
possibly damaging |
Het |
Vmn1r25 |
A |
C |
6: 57,956,223 (GRCm39) |
L22R |
probably damaging |
Het |
Vmn1r64 |
T |
C |
7: 5,887,448 (GRCm39) |
I32V |
probably benign |
Het |
Vmn2r112 |
T |
G |
17: 22,820,214 (GRCm39) |
M29R |
possibly damaging |
Het |
Vmn2r71 |
T |
A |
7: 85,273,301 (GRCm39) |
M705K |
probably benign |
Het |
Vps13b |
G |
A |
15: 35,884,743 (GRCm39) |
V3139I |
probably benign |
Het |
Zfp628 |
T |
C |
7: 4,923,830 (GRCm39) |
V684A |
probably benign |
Het |
|
Other mutations in Ctu2 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00772:Ctu2
|
APN |
8 |
123,203,977 (GRCm39) |
unclassified |
probably benign |
|
IGL01764:Ctu2
|
APN |
8 |
123,206,161 (GRCm39) |
unclassified |
probably benign |
|
IGL02190:Ctu2
|
APN |
8 |
123,208,397 (GRCm39) |
utr 3 prime |
probably benign |
|
IGL02869:Ctu2
|
APN |
8 |
123,205,530 (GRCm39) |
splice site |
probably null |
|
IGL03136:Ctu2
|
APN |
8 |
123,205,940 (GRCm39) |
unclassified |
probably benign |
|
IGL03139:Ctu2
|
APN |
8 |
123,205,446 (GRCm39) |
missense |
possibly damaging |
0.65 |
IGL03237:Ctu2
|
APN |
8 |
123,205,792 (GRCm39) |
missense |
probably benign |
0.00 |
PIT4354001:Ctu2
|
UTSW |
8 |
123,205,714 (GRCm39) |
missense |
probably damaging |
0.99 |
R0001:Ctu2
|
UTSW |
8 |
123,205,659 (GRCm39) |
missense |
probably benign |
|
R0359:Ctu2
|
UTSW |
8 |
123,204,932 (GRCm39) |
missense |
probably damaging |
0.99 |
R1078:Ctu2
|
UTSW |
8 |
123,208,238 (GRCm39) |
missense |
possibly damaging |
0.69 |
R1938:Ctu2
|
UTSW |
8 |
123,206,024 (GRCm39) |
missense |
probably damaging |
1.00 |
R2143:Ctu2
|
UTSW |
8 |
123,205,891 (GRCm39) |
missense |
probably benign |
0.16 |
R2145:Ctu2
|
UTSW |
8 |
123,205,891 (GRCm39) |
missense |
probably benign |
0.16 |
R4111:Ctu2
|
UTSW |
8 |
123,203,256 (GRCm39) |
missense |
possibly damaging |
0.64 |
R4284:Ctu2
|
UTSW |
8 |
123,204,978 (GRCm39) |
missense |
probably benign |
0.04 |
R4704:Ctu2
|
UTSW |
8 |
123,206,042 (GRCm39) |
missense |
probably damaging |
1.00 |
R4774:Ctu2
|
UTSW |
8 |
123,207,851 (GRCm39) |
missense |
probably benign |
0.17 |
R5254:Ctu2
|
UTSW |
8 |
123,203,327 (GRCm39) |
missense |
probably damaging |
1.00 |
R5804:Ctu2
|
UTSW |
8 |
123,207,965 (GRCm39) |
critical splice donor site |
probably null |
|
R5935:Ctu2
|
UTSW |
8 |
123,203,693 (GRCm39) |
unclassified |
probably benign |
|
R7378:Ctu2
|
UTSW |
8 |
123,208,238 (GRCm39) |
missense |
probably damaging |
0.99 |
R7911:Ctu2
|
UTSW |
8 |
123,207,733 (GRCm39) |
missense |
probably benign |
0.01 |
R8546:Ctu2
|
UTSW |
8 |
123,206,102 (GRCm39) |
missense |
probably damaging |
1.00 |
R8876:Ctu2
|
UTSW |
8 |
123,206,951 (GRCm39) |
missense |
|
|
R9082:Ctu2
|
UTSW |
8 |
123,203,952 (GRCm39) |
missense |
probably damaging |
1.00 |
R9272:Ctu2
|
UTSW |
8 |
123,206,045 (GRCm39) |
missense |
probably benign |
|
R9796:Ctu2
|
UTSW |
8 |
123,202,989 (GRCm39) |
missense |
probably benign |
0.34 |
|
Predicted Primers |
PCR Primer
(F):5'- CCCTGGGGTGCTGTGTACA -3'
(R):5'- GTCTGCAACAGAGAGGGGCT -3'
Sequencing Primer
(F):5'- ACAGGTGTGTGTGTGCTCCC -3'
(R):5'- CAACAGAGAGGGGCTGAGGG -3'
|
Posted On |
2014-10-15 |