Mutagenetix > Incidental Mutation

Incidental Mutation 'R2268:Foxn4'

242222

Institutional Source

Beutler Lab

Gene Symbol

Foxn4

Ensembl Gene

ENSMUSG00000042002

Gene Name

forkhead box N4

Synonyms

MMRRC Submission

040268-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R2268 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

114392225-114411868 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 114393662 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 486 (T486A)

Ref Sequence

ENSEMBL: ENSMUSP00000047951 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000031583] [ENSMUST00000044790] [ENSMUST00000102582] [ENSMUST00000129530] [ENSMUST00000144050]

AlphaFold

Q8K3Q3

Predicted Effect

probably benign
Transcript: ENSMUST00000031583

SMART Domains

Protein: ENSMUSP00000031583
Gene: ENSMUSG00000042010

Domain	Start	End	E-Value	Type
signal peptide	1	16	N/A	INTRINSIC
low complexity region	38	60	N/A	INTRINSIC
Pfam:CPSase_L_chain	249	369	2.1e-32	PFAM
Pfam:CPSase_L_D2	405	606	3.3e-52	PFAM
Pfam:ATP-grasp_4	413	576	2.1e-9	PFAM
Biotin_carb_C	640	747	9.54e-26	SMART
Pfam:Biotin_lipoyl	885	951	1.9e-17	PFAM
Pfam:ACC_central	952	1678	2.2e-290	PFAM
Pfam:Carboxyl_trans	1770	2324	2.3e-181	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000044790
AA Change: T486A

PolyPhen 2 Score 0.992 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000047951
Gene: ENSMUSG00000042002
AA Change: T486A

Domain	Start	End	E-Value	Type
low complexity region	31	43	N/A	INTRINSIC
FH	195	287	2.15e-46	SMART
low complexity region	386	403	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000102582

SMART Domains

Protein: ENSMUSP00000099642
Gene: ENSMUSG00000042010

Domain	Start	End	E-Value	Type
signal peptide	1	16	N/A	INTRINSIC
low complexity region	38	60	N/A	INTRINSIC
Pfam:CPSase_L_chain	249	369	8.2e-29	PFAM
Pfam:CPSase_L_D2	405	606	3.8e-52	PFAM
Pfam:ATP-grasp_4	409	576	1.4e-12	PFAM
Biotin_carb_C	640	747	9.54e-26	SMART
Pfam:Biotin_lipoyl	885	951	9.1e-17	PFAM
Pfam:ACC_central	952	1678	2.3e-250	PFAM
Pfam:Carboxyl_trans	1770	2324	4.8e-172	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000129530

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000143276

Predicted Effect

probably benign
Transcript: ENSMUST00000144050

Meta Mutation Damage Score

0.1526

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 97.2%
20x: 94.7%

Validation Efficiency

100% (82/82)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Members of the winged-helix/forkhead family of transcription factors, such as FOXN4, are characterized by a 110-amino acid DNA-binding domain that can fold into a variant of the helix-turn-helix motif consisting of 3 alpha helices flanked by 2 large loops or wings. These transcription factors are involved in a variety of biologic processes as key regulators in development and metabolism (Li et al., 2004 [PubMed 15363391]).[supplied by OMIM, Mar 2008]
PHENOTYPE: Homozygous null mice display postnatal lethality and abnormal retina morphology with a total loss of horizontal cells and decreased amacrine cell number. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 82 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acox2	A	T	14: 8,253,496 (GRCm38)	M217K	probably damaging	Het
Adam34	C	T	8: 44,103,647 (GRCm39)	R666H	probably benign	Het
Adap2	G	T	11: 80,056,552 (GRCm39)	Q188H	probably damaging	Het
Adgrb3	T	C	1: 25,150,898 (GRCm39)	T872A	possibly damaging	Het
Ahnak	A	G	19: 8,987,938 (GRCm39)	K3074R	possibly damaging	Het
Ano7	A	T	1: 93,308,161 (GRCm39)	D64V	possibly damaging	Het
Apob	T	C	12: 8,065,475 (GRCm39)	F4115S	possibly damaging	Het
Arl13a	A	G	X: 133,106,162 (GRCm39)	Q236R	possibly damaging	Het
Astn1	T	C	1: 158,329,669 (GRCm39)	Y175H	probably damaging	Het
Atn1	C	G	6: 124,723,203 (GRCm39)		probably benign	Het
Ccser1	C	T	6: 61,547,827 (GRCm39)	T118M	probably damaging	Het
Cenpe	A	G	3: 134,967,397 (GRCm39)	T2180A	probably benign	Het
Col17a1	G	A	19: 47,638,550 (GRCm39)	P1173S	probably benign	Het
Commd8	A	G	5: 72,322,765 (GRCm39)	W51R	probably damaging	Het
Cyp4f17	G	T	17: 32,736,928 (GRCm39)	V87F	probably benign	Het
D2hgdh	C	T	1: 93,763,157 (GRCm39)	A314V	probably damaging	Het
Dcun1d4	T	A	5: 73,638,618 (GRCm39)		probably benign	Het
Dhodh	A	G	8: 110,321,306 (GRCm39)	F360S	possibly damaging	Het
Dipk2b	A	G	X: 18,289,926 (GRCm39)	S179P	possibly damaging	Het
Dynap	C	T	18: 70,374,218 (GRCm39)	A103T	probably benign	Het
Edem2	G	A	2: 155,544,137 (GRCm39)	P538S	probably benign	Het
Egfl8	C	T	17: 34,832,832 (GRCm39)	V253M	probably damaging	Het
Erich6	A	T	3: 58,526,260 (GRCm39)	S581T	probably benign	Het
Fam117b	T	C	1: 59,952,789 (GRCm39)	L156P	probably damaging	Het
Fbn1	G	T	2: 125,163,661 (GRCm39)	A2065E	possibly damaging	Het
Fzd9	A	G	5: 135,279,148 (GRCm39)	S246P	probably damaging	Het
Hdhd2	C	T	18: 77,052,866 (GRCm39)	T172M	probably benign	Het
Heatr5a	T	C	12: 51,940,528 (GRCm39)	D1444G	possibly damaging	Het
Hmcn1	A	G	1: 150,500,349 (GRCm39)		probably benign	Het
Hps3	G	A	3: 20,067,099 (GRCm39)		probably benign	Het
Hr	A	T	14: 70,795,547 (GRCm39)	D393V	probably benign	Het
Ido2	T	C	8: 25,025,268 (GRCm39)	Y253C	probably damaging	Het
Irs2	T	C	8: 11,057,586 (GRCm39)	E282G	probably damaging	Het
Itih4	A	G	14: 30,614,385 (GRCm39)	D445G	probably damaging	Het
Kif14	T	A	1: 136,447,486 (GRCm39)	C1430*	probably null	Het
Kir3dl1	A	G	X: 135,425,784 (GRCm39)	R53G	probably benign	Het
Lama2	T	A	10: 26,868,932 (GRCm39)	I2838F	probably damaging	Het
Lamb1	A	T	12: 31,377,644 (GRCm39)	I1630F	probably damaging	Het
Lsmem1	GTACATACATACATACATACATACATACA	GTACATACATACATACATACATACATACATACA	12: 40,235,260 (GRCm39)		probably null	Het
Magi3	G	A	3: 103,928,382 (GRCm39)		probably benign	Het
Mink1	G	A	11: 70,492,550 (GRCm39)		probably null	Het
Mmrn2	A	G	14: 34,121,449 (GRCm39)	K773R	probably benign	Het
Mpdz	A	G	4: 81,301,628 (GRCm39)	S266P	probably damaging	Het
Mrc2	G	A	11: 105,239,257 (GRCm39)		probably null	Het
Mtbp	G	A	15: 55,432,556 (GRCm39)		probably null	Het
Mybphl	A	G	3: 108,272,317 (GRCm39)	E2G	probably damaging	Het
Myoc	C	T	1: 162,476,625 (GRCm39)	T443M	probably damaging	Het
Nav1	A	T	1: 135,399,974 (GRCm39)	L532*	probably null	Het
Nbeal1	T	A	1: 60,370,037 (GRCm39)		probably benign	Het
Nfix	CAAAAA	CAAAA	8: 85,442,876 (GRCm39)		probably null	Het
Opcml	T	C	9: 28,814,651 (GRCm39)	I301T	possibly damaging	Het
Or10ak16	A	T	4: 118,751,071 (GRCm39)	R264W	probably damaging	Het
Or8b1	T	A	9: 38,399,504 (GRCm39)	Y60N	probably damaging	Het
Pappa2	A	G	1: 158,684,841 (GRCm39)	M766T	probably damaging	Het
Phf8	T	C	X: 150,355,597 (GRCm39)	L520S	possibly damaging	Het
Phka1	A	G	X: 101,584,716 (GRCm39)		probably benign	Het
Ppp2ca	G	A	11: 52,008,913 (GRCm39)	G138R	probably damaging	Het
Prrc1	G	T	18: 57,514,718 (GRCm39)	D312Y	probably damaging	Het
Rdh7	A	G	10: 127,720,530 (GRCm39)	S281P	probably benign	Het
Rps17	C	T	7: 80,994,746 (GRCm39)	R5H	probably benign	Het
Scgb1b2	T	A	7: 30,991,201 (GRCm39)		probably benign	Het
Skic3	T	G	13: 76,260,393 (GRCm39)		probably benign	Het
Slc35a3	T	C	3: 116,467,285 (GRCm39)	K325E	possibly damaging	Het
Snap23	A	G	2: 120,429,793 (GRCm39)	T213A	probably benign	Het
Spag17	C	A	3: 99,969,182 (GRCm39)		probably null	Het
Srebf1	A	G	11: 60,097,973 (GRCm39)	S44P	probably damaging	Het
St8sia5	T	C	18: 77,320,526 (GRCm39)	S93P	probably damaging	Het
Styk1	T	C	6: 131,289,539 (GRCm39)	E25G	probably benign	Het
Taar8b	T	C	10: 23,967,270 (GRCm39)	N308S	probably damaging	Het
Tbc1d14	A	G	5: 36,700,561 (GRCm39)	L269P	possibly damaging	Het
Tbc1d22b	A	G	17: 29,818,828 (GRCm39)	H394R	probably damaging	Het
Tbx5	A	T	5: 119,983,174 (GRCm39)		probably null	Het
Tgfbr3l	A	G	8: 4,300,506 (GRCm39)	E228G	probably benign	Het
Tlr5	T	A	1: 182,802,600 (GRCm39)	S635T	possibly damaging	Het
Tmem233	G	C	5: 116,189,517 (GRCm39)		probably benign	Het
Tymp	A	T	15: 89,258,011 (GRCm39)	V378D	probably damaging	Het
Vangl1	A	T	3: 102,104,160 (GRCm39)	Y7N	probably damaging	Het
Vav2	A	T	2: 27,182,667 (GRCm39)		probably null	Het
Vcp	G	A	4: 42,980,833 (GRCm39)	A759V	possibly damaging	Het
Vmn2r15	A	G	5: 109,441,073 (GRCm39)	Y262H	probably benign	Het
Vmn2r76	T	C	7: 85,879,707 (GRCm39)	M198V	probably benign	Het
Zfp831	A	C	2: 174,486,034 (GRCm39)	R236S	probably benign	Het

Other mutations in Foxn4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02990:Foxn4	APN	5	114,411,050 (GRCm39)	missense	probably damaging	0.98
R0001:Foxn4	UTSW	5	114,398,931 (GRCm39)	missense	probably damaging	1.00
R0194:Foxn4	UTSW	5	114,397,809 (GRCm39)	critical splice donor site	probably null
R0555:Foxn4	UTSW	5	114,401,175 (GRCm39)	missense	probably damaging	1.00
R0617:Foxn4	UTSW	5	114,399,129 (GRCm39)	splice site	probably benign
R1662:Foxn4	UTSW	5	114,394,955 (GRCm39)	missense	probably benign
R1785:Foxn4	UTSW	5	114,401,193 (GRCm39)	missense	probably damaging	0.99
R1786:Foxn4	UTSW	5	114,401,193 (GRCm39)	missense	probably damaging	0.99
R2266:Foxn4	UTSW	5	114,393,662 (GRCm39)	missense	probably damaging	0.99
R2267:Foxn4	UTSW	5	114,393,662 (GRCm39)	missense	probably damaging	0.99
R2269:Foxn4	UTSW	5	114,393,662 (GRCm39)	missense	probably damaging	0.99
R2397:Foxn4	UTSW	5	114,393,556 (GRCm39)	missense	probably damaging	1.00
R3121:Foxn4	UTSW	5	114,396,776 (GRCm39)	missense	probably damaging	0.99
R3122:Foxn4	UTSW	5	114,396,776 (GRCm39)	missense	probably damaging	0.99
R4579:Foxn4	UTSW	5	114,394,886 (GRCm39)	missense	possibly damaging	0.65
R4623:Foxn4	UTSW	5	114,398,991 (GRCm39)	missense	possibly damaging	0.64
R4749:Foxn4	UTSW	5	114,393,628 (GRCm39)	missense	probably damaging	1.00
R5083:Foxn4	UTSW	5	114,394,988 (GRCm39)	missense	probably damaging	1.00
R5100:Foxn4	UTSW	5	114,394,820 (GRCm39)	missense	possibly damaging	0.87
R5661:Foxn4	UTSW	5	114,411,053 (GRCm39)	missense	probably benign
R7015:Foxn4	UTSW	5	114,394,916 (GRCm39)	missense	possibly damaging	0.95
R7292:Foxn4	UTSW	5	114,396,716 (GRCm39)	nonsense	probably null
R7342:Foxn4	UTSW	5	114,396,760 (GRCm39)	missense	probably damaging	1.00
R7627:Foxn4	UTSW	5	114,398,495 (GRCm39)	missense	possibly damaging	0.87
R7695:Foxn4	UTSW	5	114,394,648 (GRCm39)	missense	probably damaging	1.00
R7970:Foxn4	UTSW	5	114,401,068 (GRCm39)	critical splice donor site	probably null
R8037:Foxn4	UTSW	5	114,394,658 (GRCm39)	missense	probably damaging	1.00
R8038:Foxn4	UTSW	5	114,394,658 (GRCm39)	missense	probably damaging	1.00
R9339:Foxn4	UTSW	5	114,394,955 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- GAACCACAAGCTGTCATTTCC -3'
(R):5'- TGAACTCAGGGCTGATTGGC -3'

Sequencing Primer
(F):5'- TCCCCCGTCAGCAATTGG -3'
(R):5'- GGCTGATTGGCCCTAAGC -3'

Posted On

2014-10-16