Mutagenetix > Incidental Mutation

Incidental Mutation 'R2269:Vmn2r107'

242356

Institutional Source

Beutler Lab

Gene Symbol

Vmn2r107

Ensembl Gene

ENSMUSG00000056910

Gene Name

vomeronasal 2, receptor 107

Synonyms

V2r6

MMRRC Submission

040269-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.156) question?

Stock #

R2269 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

20565687-20596034 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 20595817 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Threonine at position 790 (I790T)

Ref Sequence

ENSEMBL: ENSMUSP00000048706 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000042090]

AlphaFold

E9PZJ7

Predicted Effect

possibly damaging
Transcript: ENSMUST00000042090
AA Change: I790T

PolyPhen 2 Score 0.580 (Sensitivity: 0.88; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000048706
Gene: ENSMUSG00000056910
AA Change: I790T

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
Pfam:ANF_receptor	83	466	3.6e-40	PFAM
Pfam:NCD3G	509	562	5.1e-21	PFAM
Pfam:7tm_3	593	830	8e-51	PFAM

Meta Mutation Damage Score

0.1795

Coding Region Coverage

1x: 99.2%
3x: 98.7%
10x: 97.5%
20x: 95.7%

Validation Efficiency

98% (79/81)

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca16	A	G	7: 120,030,383 (GRCm39)	D165G	probably benign	Het
Abca8a	A	C	11: 109,917,718 (GRCm39)	F1574V	probably damaging	Het
Adh6a	A	T	3: 138,034,857 (GRCm39)	I329L	probably benign	Het
Agap2	T	A	10: 126,918,297 (GRCm39)		probably benign	Het
Ager	A	T	17: 34,818,124 (GRCm39)	I185F	probably damaging	Het
Agrn	C	T	4: 156,263,675 (GRCm39)	G173R	probably damaging	Het
Arhgef16	T	A	4: 154,369,490 (GRCm39)	H329L	probably damaging	Het
Astn1	T	C	1: 158,329,669 (GRCm39)	Y175H	probably damaging	Het
Banp	A	G	8: 122,702,662 (GRCm39)	T70A	probably benign	Het
Bcl11b	T	C	12: 107,881,910 (GRCm39)	T802A	possibly damaging	Het
Ces2a	A	T	8: 105,466,822 (GRCm39)	I65F	probably benign	Het
Cflar	G	A	1: 58,780,206 (GRCm39)		probably null	Het
Clec16a	G	A	16: 10,462,650 (GRCm39)	R656H	probably damaging	Het
Cntn1	A	G	15: 92,192,863 (GRCm39)		probably benign	Het
Coasy	A	G	11: 100,976,708 (GRCm39)	T493A	probably benign	Het
Col16a1	C	A	4: 129,946,711 (GRCm39)	H111Q	probably benign	Het
Commd8	A	G	5: 72,322,765 (GRCm39)	W51R	probably damaging	Het
Cyp3a41b	A	T	5: 145,514,976 (GRCm39)	V83D	probably benign	Het
D2hgdh	C	T	1: 93,763,157 (GRCm39)	A314V	probably damaging	Het
Dcun1d4	T	A	5: 73,638,618 (GRCm39)		probably benign	Het
Decr2	C	A	17: 26,302,858 (GRCm39)	V173L	probably benign	Het
Defb11	A	G	8: 22,395,444 (GRCm39)	*78Q	probably null	Het
Dock3	C	A	9: 106,818,525 (GRCm39)	V1190F	probably damaging	Het
Dusp1	A	T	17: 26,726,093 (GRCm39)	I200N	probably damaging	Het
Efna1	G	A	3: 89,183,646 (GRCm39)	A60V	possibly damaging	Het
Egfl8	C	T	17: 34,832,832 (GRCm39)	V253M	probably damaging	Het
Epb41	T	A	4: 131,691,458 (GRCm39)	N623I	probably benign	Het
Fbxw22	C	T	9: 109,213,062 (GRCm39)	R295K	probably benign	Het
Foxn4	T	C	5: 114,393,662 (GRCm39)	T486A	probably damaging	Het
Gbe1	C	T	16: 70,233,840 (GRCm39)	A239V	probably damaging	Het
Gpatch3	C	T	4: 133,311,118 (GRCm39)	A518V	possibly damaging	Het
Gpc6	A	T	14: 118,125,932 (GRCm39)		probably null	Het
Hdhd2	C	T	18: 77,052,866 (GRCm39)	T172M	probably benign	Het
Heatr5a	T	C	12: 51,940,528 (GRCm39)	D1444G	possibly damaging	Het
Hnrnpul1	A	G	7: 25,450,299 (GRCm39)	Y138H	probably damaging	Het
Itgal	A	G	7: 126,905,873 (GRCm39)	I352V	possibly damaging	Het
Klhl31	A	G	9: 77,557,440 (GRCm39)	D52G	possibly damaging	Het
Klk1b21	T	C	7: 43,753,863 (GRCm39)	I49T	possibly damaging	Het
Lama2	T	A	10: 26,868,932 (GRCm39)	I2838F	probably damaging	Het
Lrrc43	A	T	5: 123,641,354 (GRCm39)	T513S	probably damaging	Het
Lsmem1	GTACATACATACATACATACATACATACA	GTACATACATACATACATACATACATACATACA	12: 40,235,260 (GRCm39)		probably null	Het
Mamdc2	A	T	19: 23,281,267 (GRCm39)		probably benign	Het
Mpdz	A	G	4: 81,301,628 (GRCm39)	S266P	probably damaging	Het
Mrc2	G	A	11: 105,239,257 (GRCm39)		probably null	Het
Mroh5	T	C	15: 73,664,997 (GRCm39)	N258D	probably benign	Het
Mrpl28	T	C	17: 26,345,285 (GRCm39)	V235A	probably benign	Het
Mtbp	G	A	15: 55,432,556 (GRCm39)		probably null	Het
Mtss2	A	G	8: 111,455,362 (GRCm39)	K92E	possibly damaging	Het
Muc4	C	A	16: 32,754,529 (GRCm38)	H1468N	probably benign	Het
Nav1	A	T	1: 135,399,974 (GRCm39)	L532*	probably null	Het
Or10ak16	A	T	4: 118,751,071 (GRCm39)	R264W	probably damaging	Het
Or1e23	A	G	11: 73,407,309 (GRCm39)	S239P	probably damaging	Het
Or51f1d	G	A	7: 102,701,344 (GRCm39)	V280I	probably benign	Het
Pappa2	A	G	1: 158,684,841 (GRCm39)	M766T	probably damaging	Het
Pkhd1	C	T	1: 20,604,759 (GRCm39)		probably null	Het
Plch2	T	C	4: 155,077,461 (GRCm39)	E423G	probably benign	Het
Prrc1	G	T	18: 57,514,718 (GRCm39)	D312Y	probably damaging	Het
Pxdn	T	A	12: 30,055,774 (GRCm39)	V1220E	probably damaging	Het
Robo1	T	A	16: 72,775,660 (GRCm39)	F728L	probably benign	Het
Rtel1	G	T	2: 180,977,796 (GRCm39)	Q292H	probably benign	Het
Sh3bp4	G	A	1: 89,073,314 (GRCm39)	V721I	possibly damaging	Het
Slc2a10	T	A	2: 165,356,701 (GRCm39)	C120*	probably null	Het
Srd5a2	T	C	17: 74,331,485 (GRCm39)	R171G	probably damaging	Het
Srsf4	T	C	4: 131,624,993 (GRCm39)	V130A	probably damaging	Het
Styk1	T	C	6: 131,289,539 (GRCm39)	E25G	probably benign	Het
Taar8b	T	C	10: 23,967,270 (GRCm39)	N308S	probably damaging	Het
Tbc1d14	A	G	5: 36,700,561 (GRCm39)	L269P	possibly damaging	Het
Tbx1	T	C	16: 18,400,744 (GRCm39)		probably null	Het
Tmem233	G	C	5: 116,189,517 (GRCm39)		probably benign	Het
Tmem252	T	C	19: 24,651,455 (GRCm39)	I8T	probably benign	Het
Vcp	G	A	4: 42,980,833 (GRCm39)	A759V	possibly damaging	Het
Vmn2r77	T	C	7: 86,460,897 (GRCm39)	V741A	probably benign	Het
Vps13c	T	C	9: 67,828,229 (GRCm39)	V1461A	possibly damaging	Het
Ylpm1	T	A	12: 85,061,824 (GRCm39)	V575E	unknown	Het
Zbp1	T	A	2: 173,060,616 (GRCm39)		probably benign	Het
Zfp280d	C	A	9: 72,209,052 (GRCm39)		probably benign	Het
Zkscan5	A	G	5: 145,142,277 (GRCm39)	Y58C	probably damaging	Het

Other mutations in Vmn2r107

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01402:Vmn2r107	APN	17	20,596,009 (GRCm39)	missense	probably damaging	0.98
IGL01768:Vmn2r107	APN	17	20,565,868 (GRCm39)	missense	probably benign	0.32
IGL02086:Vmn2r107	APN	17	20,578,062 (GRCm39)	missense	probably benign	0.00
IGL02136:Vmn2r107	APN	17	20,595,168 (GRCm39)	missense	probably benign	0.02
IGL02266:Vmn2r107	APN	17	20,577,039 (GRCm39)	missense	probably damaging	1.00
IGL02285:Vmn2r107	APN	17	20,595,823 (GRCm39)	missense	probably damaging	1.00
IGL02724:Vmn2r107	APN	17	20,577,006 (GRCm39)	missense	possibly damaging	0.49
IGL02998:Vmn2r107	APN	17	20,578,017 (GRCm39)	missense	probably damaging	0.99
IGL03089:Vmn2r107	APN	17	20,595,974 (GRCm39)	missense	probably benign	0.05
IGL03284:Vmn2r107	APN	17	20,577,173 (GRCm39)	missense	probably benign	0.07
IGL03307:Vmn2r107	APN	17	20,577,038 (GRCm39)	missense	probably benign	0.09
IGL03399:Vmn2r107	APN	17	20,578,220 (GRCm39)	splice site	probably benign
3-1:Vmn2r107	UTSW	17	20,565,766 (GRCm39)	missense	probably benign
BB006:Vmn2r107	UTSW	17	20,565,706 (GRCm39)	missense	probably null	0.96
BB016:Vmn2r107	UTSW	17	20,565,706 (GRCm39)	missense	probably null	0.96
R0285:Vmn2r107	UTSW	17	20,565,873 (GRCm39)	missense	probably benign	0.00
R0455:Vmn2r107	UTSW	17	20,595,085 (GRCm39)	splice site	probably benign
R0497:Vmn2r107	UTSW	17	20,595,394 (GRCm39)	missense	probably damaging	1.00
R0506:Vmn2r107	UTSW	17	20,578,021 (GRCm39)	missense	probably benign
R0621:Vmn2r107	UTSW	17	20,595,252 (GRCm39)	missense	probably benign	0.01
R0667:Vmn2r107	UTSW	17	20,575,916 (GRCm39)	missense	possibly damaging	0.91
R1118:Vmn2r107	UTSW	17	20,576,860 (GRCm39)	missense	probably benign	0.03
R1204:Vmn2r107	UTSW	17	20,578,031 (GRCm39)	missense	probably benign
R1237:Vmn2r107	UTSW	17	20,576,947 (GRCm39)	nonsense	probably null
R1485:Vmn2r107	UTSW	17	20,595,109 (GRCm39)	missense	possibly damaging	0.95
R1783:Vmn2r107	UTSW	17	20,576,775 (GRCm39)	missense	possibly damaging	0.51
R1873:Vmn2r107	UTSW	17	20,565,840 (GRCm39)	missense	probably benign	0.10
R1974:Vmn2r107	UTSW	17	20,575,879 (GRCm39)	splice site	probably null
R2009:Vmn2r107	UTSW	17	20,595,729 (GRCm39)	missense	probably benign	0.01
R2029:Vmn2r107	UTSW	17	20,595,549 (GRCm39)	missense	probably benign	0.01
R2164:Vmn2r107	UTSW	17	20,595,904 (GRCm39)	missense	probably damaging	1.00
R3087:Vmn2r107	UTSW	17	20,580,607 (GRCm39)	missense	probably benign	0.03
R3740:Vmn2r107	UTSW	17	20,595,151 (GRCm39)	missense	probably benign	0.00
R3961:Vmn2r107	UTSW	17	20,595,717 (GRCm39)	missense	probably damaging	1.00
R4031:Vmn2r107	UTSW	17	20,595,483 (GRCm39)	missense	probably benign	0.00
R4270:Vmn2r107	UTSW	17	20,576,041 (GRCm39)	missense	probably benign
R4963:Vmn2r107	UTSW	17	20,595,403 (GRCm39)	missense	probably damaging	1.00
R5121:Vmn2r107	UTSW	17	20,576,015 (GRCm39)	missense	probably benign	0.01
R5640:Vmn2r107	UTSW	17	20,595,426 (GRCm39)	missense	probably damaging	1.00
R6007:Vmn2r107	UTSW	17	20,595,316 (GRCm39)	missense	probably benign	0.19
R6238:Vmn2r107	UTSW	17	20,565,849 (GRCm39)	missense	probably benign	0.43
R6298:Vmn2r107	UTSW	17	20,576,044 (GRCm39)	missense	probably benign	0.00
R6467:Vmn2r107	UTSW	17	20,595,939 (GRCm39)	missense	probably damaging	0.99
R6726:Vmn2r107	UTSW	17	20,595,637 (GRCm39)	missense	probably damaging	0.96
R6782:Vmn2r107	UTSW	17	20,577,141 (GRCm39)	missense	probably damaging	1.00
R7299:Vmn2r107	UTSW	17	20,565,878 (GRCm39)	missense	probably benign	0.01
R7301:Vmn2r107	UTSW	17	20,565,878 (GRCm39)	missense	probably benign	0.01
R7375:Vmn2r107	UTSW	17	20,576,138 (GRCm39)	missense	probably benign
R7448:Vmn2r107	UTSW	17	20,595,994 (GRCm39)	missense	probably benign	0.00
R7495:Vmn2r107	UTSW	17	20,595,271 (GRCm39)	missense	possibly damaging	0.71
R7589:Vmn2r107	UTSW	17	20,595,634 (GRCm39)	missense	probably benign	0.05
R7594:Vmn2r107	UTSW	17	20,580,635 (GRCm39)	missense	probably benign	0.03
R7678:Vmn2r107	UTSW	17	20,576,901 (GRCm39)	missense	probably benign	0.01
R7929:Vmn2r107	UTSW	17	20,565,706 (GRCm39)	missense	probably null	0.96
R7974:Vmn2r107	UTSW	17	20,577,270 (GRCm39)	missense	probably benign	0.00
R8040:Vmn2r107	UTSW	17	20,595,808 (GRCm39)	missense	probably damaging	1.00
R8263:Vmn2r107	UTSW	17	20,580,614 (GRCm39)	missense	probably damaging	1.00
R8426:Vmn2r107	UTSW	17	20,577,239 (GRCm39)	missense	possibly damaging	0.91
R9175:Vmn2r107	UTSW	17	20,577,051 (GRCm39)	missense	possibly damaging	0.79
R9537:Vmn2r107	UTSW	17	20,595,149 (GRCm39)	missense	probably benign	0.00
R9642:Vmn2r107	UTSW	17	20,580,661 (GRCm39)	missense	probably damaging	1.00
R9711:Vmn2r107	UTSW	17	20,577,262 (GRCm39)	missense	probably damaging	1.00
X0022:Vmn2r107	UTSW	17	20,577,230 (GRCm39)	missense	possibly damaging	0.85

Predicted Primers

PCR Primer
(F):5'- TTTGTGCAACAAGGGCTCAG -3'
(R):5'- GACCCCTTTTATGAAGTCGTTAAC -3'

Sequencing Primer
(F):5'- CAACAAGGGCTCAGCTGTTG -3'
(R):5'- AATCTTCCTTCTAGAATGTGTTGTTC -3'

Posted On

2014-10-16