Mutagenetix > Incidental Mutation

Incidental Mutation 'R2257:Zc3h3'

243480

Institutional Source

Beutler Lab

Gene Symbol

Zc3h3

Ensembl Gene

ENSMUSG00000075600

Gene Name

zinc finger CCCH type containing 3

Synonyms

Smicl

MMRRC Submission

040257-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.947) question?

Stock #

R2257 (G1)

Quality Score

199

Status

Validated

Chromosome

Chromosomal Location

75626279-75713764 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 75711415 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Lysine at position 349 (Q349K)

Ref Sequence

ENSEMBL: ENSMUSP00000098106 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000100538]

AlphaFold

Q8CHP0

Predicted Effect

possibly damaging
Transcript: ENSMUST00000100538
AA Change: Q349K

PolyPhen 2 Score 0.768 (Sensitivity: 0.85; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000098106
Gene: ENSMUSG00000075600
AA Change: Q349K

Domain	Start	End	E-Value	Type
low complexity region	2	15	N/A	INTRINSIC
low complexity region	370	388	N/A	INTRINSIC
low complexity region	543	558	N/A	INTRINSIC
ZnF_C3H1	663	689	1.03e-2	SMART
ZnF_C3H1	690	716	1.16e-1	SMART
ZnF_C3H1	718	743	5.38e-6	SMART
ZnF_C3H1	745	771	2.88e-6	SMART
ZnF_C3H1	772	794	1.64e-1	SMART
low complexity region	839	888	N/A	INTRINSIC
low complexity region	895	905	N/A	INTRINSIC

Meta Mutation Damage Score

0.0646

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 97.0%
20x: 94.2%

Validation Efficiency

96% (70/73)

Allele List at MGI

All alleles(7) : Targeted, other(2) Gene trapped(5)

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930567H17Rik	A	T	X: 69,438,012 (GRCm39)	W94R	probably damaging	Het
Abcc3	C	T	11: 94,254,420 (GRCm39)	V693M	probably damaging	Het
Acp7	A	C	7: 28,313,838 (GRCm39)	W399G	probably damaging	Het
Ap1s1	T	C	5: 137,070,633 (GRCm39)	Y94C	possibly damaging	Het
Arhgap32	T	C	9: 32,158,793 (GRCm39)	I186T	probably damaging	Het
Atg4a	A	G	X: 139,890,984 (GRCm39)	I91V	probably benign	Het
Atp7b	T	G	8: 22,488,282 (GRCm39)	T1102P	probably damaging	Het
Cabs1	T	C	5: 88,128,074 (GRCm39)	S242P	probably damaging	Het
Cass4	T	C	2: 172,269,390 (GRCm39)	F493L	probably damaging	Het
Cass4	C	T	2: 172,274,478 (GRCm39)	P753L	probably damaging	Het
Cdk14	T	A	5: 4,938,924 (GRCm39)	M433L	probably benign	Het
Cep162	C	A	9: 87,088,967 (GRCm39)	D972Y	probably damaging	Het
Cfap100	C	G	6: 90,390,802 (GRCm39)	R184P	possibly damaging	Het
Cimip3	AC	A	17: 47,744,348 (GRCm39)		probably benign	Het
Clasrp	A	G	7: 19,320,510 (GRCm39)		probably benign	Het
Copb1	T	A	7: 113,853,110 (GRCm39)	D29V	possibly damaging	Het
Cyp2b9	G	A	7: 25,873,030 (GRCm39)		probably null	Het
Dhx36	C	T	3: 62,385,064 (GRCm39)	G683S	probably damaging	Het
Dnaaf11	T	A	15: 66,309,436 (GRCm39)		probably benign	Het
Dnah10	T	A	5: 124,838,301 (GRCm39)	I1110N	probably damaging	Het
Dnajc3	C	G	14: 119,210,114 (GRCm39)	P322A	probably benign	Het
Eml4	A	G	17: 83,785,189 (GRCm39)	T785A	probably damaging	Het
Fam228a	T	C	12: 4,787,775 (GRCm39)		probably benign	Het
Fam83e	A	T	7: 45,378,193 (GRCm39)	K406*	probably null	Het
Fam83e	A	T	7: 45,378,194 (GRCm39)	K406M	possibly damaging	Het
Fam90a1a	T	A	8: 22,453,533 (GRCm39)	L296Q	possibly damaging	Het
Fat1	A	G	8: 45,403,408 (GRCm39)	Y53C	probably damaging	Het
Fcrl2	T	C	3: 87,166,928 (GRCm39)	I22V	probably damaging	Het
Fryl	T	A	5: 73,230,187 (GRCm39)	N1657Y	possibly damaging	Het
Greb1l	A	G	18: 10,503,307 (GRCm39)	M453V	possibly damaging	Het
Grm8	A	T	6: 27,760,224 (GRCm39)	C369S	probably damaging	Het
Hdc	G	A	2: 126,458,000 (GRCm39)		probably null	Het
Hsf3	A	T	X: 95,363,928 (GRCm39)	L191*	probably null	Het
Iqca1l	C	T	5: 24,757,038 (GRCm39)		probably benign	Het
Kif4	A	T	X: 99,769,737 (GRCm39)	N1126Y	probably benign	Het
Lat2	T	C	5: 134,631,481 (GRCm39)	D191G	probably damaging	Het
Lipt2	C	T	7: 99,808,601 (GRCm39)	T38I	probably benign	Het
Lmo7	T	C	14: 102,137,566 (GRCm39)	L634P	probably damaging	Het
Magea2	A	T	X: 153,810,855 (GRCm39)	L243Q	probably damaging	Het
Mctp2	A	G	7: 71,835,568 (GRCm39)	L543P	probably damaging	Het
Mgat4a	T	C	1: 37,529,394 (GRCm39)	N24D	probably benign	Het
Mical3	A	T	6: 121,010,696 (GRCm39)	S429T	possibly damaging	Het
Mrps35	A	G	6: 146,972,125 (GRCm39)	E256G	possibly damaging	Het
Mybbp1a	T	A	11: 72,337,021 (GRCm39)	S586T	probably benign	Het
Myo1e	G	A	9: 70,285,655 (GRCm39)		probably null	Het
Nob1	A	G	8: 108,143,729 (GRCm39)		probably benign	Het
Nom1	T	A	5: 29,642,750 (GRCm39)	V417D	probably damaging	Het
Nphs1	A	T	7: 30,167,417 (GRCm39)	I782F	possibly damaging	Het
Numa1	A	G	7: 101,649,998 (GRCm39)	E1243G	probably damaging	Het
Or52e7	A	G	7: 104,685,026 (GRCm39)	Y207C	probably benign	Het
Or7g27	A	G	9: 19,249,789 (GRCm39)	E11G	probably benign	Het
Padi4	G	A	4: 140,487,251 (GRCm39)	T217I	possibly damaging	Het
Pias3	C	T	3: 96,606,962 (GRCm39)	T75I	probably benign	Het
Ppp1r37	G	T	7: 19,295,943 (GRCm39)		probably benign	Het
Prrc2a	G	A	17: 35,380,044 (GRCm39)	P185L	unknown	Het
Prss57	C	T	10: 79,623,204 (GRCm39)	C81Y	probably damaging	Het
Psen1	C	T	12: 83,761,594 (GRCm39)	S132L	probably damaging	Het
Ranbp6	A	G	19: 29,788,949 (GRCm39)	S468P	possibly damaging	Het
Sla2	G	A	2: 156,717,862 (GRCm39)	R137C	probably damaging	Het
Slc2a9	T	C	5: 38,610,542 (GRCm39)	T86A	probably damaging	Het
Slco1a6	A	T	6: 142,036,742 (GRCm39)	M555K	probably benign	Het
Thoc1	C	A	18: 9,993,466 (GRCm39)	D608E	possibly damaging	Het
Tmem121b	A	T	6: 120,469,030 (GRCm39)	Y562*	probably null	Het
Tmem121b	A	G	6: 120,469,032 (GRCm39)	Y562H	probably damaging	Het
Tmprss7	A	T	16: 45,506,696 (GRCm39)	M122K	possibly damaging	Het
Tmub1	C	A	5: 24,651,922 (GRCm39)	G14V	possibly damaging	Het
Uap1	A	T	1: 169,986,312 (GRCm39)		probably benign	Het
Ugdh	A	T	5: 65,574,458 (GRCm39)		probably benign	Het
Vmn2r59	A	T	7: 41,661,669 (GRCm39)	C715*	probably null	Het
Vps13a	G	A	19: 16,659,538 (GRCm39)	T1663I	possibly damaging	Het
Vps13c	A	C	9: 67,860,228 (GRCm39)	I2815L	possibly damaging	Het

Other mutations in Zc3h3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00321:Zc3h3	APN	15	75,651,162 (GRCm39)	missense	probably damaging	1.00
1mM(1):Zc3h3	UTSW	15	75,712,414 (GRCm39)	critical splice acceptor site	probably null
R0477:Zc3h3	UTSW	15	75,648,932 (GRCm39)	missense	possibly damaging	0.93
R0843:Zc3h3	UTSW	15	75,709,328 (GRCm39)	missense	probably benign	0.00
R1891:Zc3h3	UTSW	15	75,628,780 (GRCm39)	missense	possibly damaging	0.47
R1918:Zc3h3	UTSW	15	75,648,967 (GRCm39)	missense	probably damaging	1.00
R2009:Zc3h3	UTSW	15	75,651,158 (GRCm39)	missense	probably damaging	1.00
R3853:Zc3h3	UTSW	15	75,709,346 (GRCm39)	missense	probably benign	0.03
R5130:Zc3h3	UTSW	15	75,651,139 (GRCm39)	missense	probably damaging	1.00
R5160:Zc3h3	UTSW	15	75,681,512 (GRCm39)	missense	probably benign	0.02
R5164:Zc3h3	UTSW	15	75,648,875 (GRCm39)	missense	probably benign	0.02
R5279:Zc3h3	UTSW	15	75,711,439 (GRCm39)	missense	probably benign	0.08
R5622:Zc3h3	UTSW	15	75,648,928 (GRCm39)	missense	probably damaging	1.00
R5743:Zc3h3	UTSW	15	75,651,380 (GRCm39)	nonsense	probably null
R5923:Zc3h3	UTSW	15	75,657,413 (GRCm39)	missense	probably damaging	0.99
R6294:Zc3h3	UTSW	15	75,681,417 (GRCm39)	missense	possibly damaging	0.90
R6377:Zc3h3	UTSW	15	75,711,304 (GRCm39)	missense	probably damaging	0.99
R6735:Zc3h3	UTSW	15	75,628,483 (GRCm39)	missense	probably benign	0.00
R7043:Zc3h3	UTSW	15	75,681,485 (GRCm39)	missense	probably damaging	1.00
R7231:Zc3h3	UTSW	15	75,712,231 (GRCm39)	missense	probably damaging	1.00
R8974:Zc3h3	UTSW	15	75,657,452 (GRCm39)	missense	probably benign	0.00
R9038:Zc3h3	UTSW	15	75,711,237 (GRCm39)	missense	probably benign	0.01
R9068:Zc3h3	UTSW	15	75,711,499 (GRCm39)	missense	probably benign
R9557:Zc3h3	UTSW	15	75,711,145 (GRCm39)	missense	probably damaging	1.00
R9567:Zc3h3	UTSW	15	75,651,261 (GRCm39)	missense	probably damaging	1.00
R9681:Zc3h3	UTSW	15	75,681,470 (GRCm39)	missense	probably damaging	1.00
R9765:Zc3h3	UTSW	15	75,709,459 (GRCm39)	missense	probably benign	0.04
R9782:Zc3h3	UTSW	15	75,681,489 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CAAAGAGGGGCTTCAAGCTG -3'
(R):5'- TTCAGTCAGACCAGCAACAG -3'

Sequencing Primer
(F):5'- CCCTGATGTGGGCCTAGATG -3'
(R):5'- CAACAGCCAGGCAGGTCAG -3'

Posted On

2014-10-16