Incidental Mutation 'R0308:Tarm1'
ID 24967
Institutional Source Beutler Lab
Gene Symbol Tarm1
Ensembl Gene ENSMUSG00000053338
Gene Name T cell-interacting, activating receptor on myeloid cells 1
Synonyms Gm9904, 9930022N03Rik
MMRRC Submission 038518-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.071) question?
Stock # R0308 (G1)
Quality Score 202
Status Validated
Chromosome 7
Chromosomal Location 3535016-3551140 bp(-) (GRCm39)
Type of Mutation splice site
DNA Base Change (assembly) T to C at 3545187 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000145491 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000065703] [ENSMUST00000203020] [ENSMUST00000203821]
AlphaFold B6A8R8
Predicted Effect probably benign
Transcript: ENSMUST00000065703
SMART Domains Protein: ENSMUSP00000069745
Gene: ENSMUSG00000053338

DomainStartEndE-ValueType
signal peptide 1 16 N/A INTRINSIC
IG_like 34 120 9.45e0 SMART
IG 131 217 5.28e-3 SMART
transmembrane domain 256 278 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000203020
SMART Domains Protein: ENSMUSP00000145188
Gene: ENSMUSG00000053338

DomainStartEndE-ValueType
signal peptide 1 16 N/A INTRINSIC
IG_like 40 104 4.6e-3 SMART
IG_like 92 198 4.1e-2 SMART
IG 131 217 2.2e-5 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000203821
SMART Domains Protein: ENSMUSP00000145491
Gene: ENSMUSG00000053338

DomainStartEndE-ValueType
signal peptide 1 16 N/A INTRINSIC
IG_like 34 120 9.45e0 SMART
IG 131 217 5.28e-3 SMART
transmembrane domain 256 278 N/A INTRINSIC
Coding Region Coverage
  • 1x: 98.8%
  • 3x: 97.7%
  • 10x: 95.1%
  • 20x: 89.5%
Validation Efficiency 100% (82/82)
Allele List at MGI
Other mutations in this stock
Total: 81 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700009N14Rik A T 4: 39,450,989 (GRCm39) D65V probably damaging Het
4933407L21Rik A T 1: 85,859,007 (GRCm39) probably benign Het
Abcc12 C T 8: 87,284,381 (GRCm39) probably benign Het
Adamts12 A G 15: 11,311,646 (GRCm39) E1301G probably damaging Het
Adh4 A T 3: 138,129,863 (GRCm39) N230Y probably damaging Het
Anapc15-ps T A 10: 95,508,954 (GRCm39) M109L probably benign Het
Angpt2 T C 8: 18,742,141 (GRCm39) I472V possibly damaging Het
Arhgef26 C A 3: 62,247,820 (GRCm39) D301E probably benign Het
Armc10 G A 5: 21,852,295 (GRCm39) probably benign Het
Atm T C 9: 53,365,773 (GRCm39) probably null Het
Atp5f1b T C 10: 127,921,908 (GRCm39) V265A probably benign Het
Atp8b1 G T 18: 64,678,315 (GRCm39) C860* probably null Het
Atrnl1 T G 19: 57,741,720 (GRCm39) S1160A probably benign Het
Bmal1 A T 7: 112,890,743 (GRCm39) I179F probably damaging Het
Cep55 A G 19: 38,048,659 (GRCm39) E105G possibly damaging Het
Cfap54 C A 10: 92,721,226 (GRCm39) D2502Y unknown Het
Cilp2 A G 8: 70,335,643 (GRCm39) S452P probably benign Het
Clptm1l A G 13: 73,759,786 (GRCm39) D282G possibly damaging Het
Csrp1 C A 1: 135,673,024 (GRCm39) T47N probably damaging Het
Cyp2c40 T A 19: 39,766,432 (GRCm39) I388F probably damaging Het
Dars1 C T 1: 128,291,996 (GRCm39) R494H probably damaging Het
Dna2 T C 10: 62,792,753 (GRCm39) V256A probably damaging Het
Dock7 T C 4: 98,873,051 (GRCm39) T1132A probably benign Het
Dpcd T G 19: 45,565,445 (GRCm39) F140V probably damaging Het
Elk3 A T 10: 93,101,067 (GRCm39) M228K probably benign Het
Erich6 A G 3: 58,543,525 (GRCm39) F182L probably damaging Het
Fhad1 A G 4: 141,712,904 (GRCm39) probably benign Het
Fryl A T 5: 73,198,947 (GRCm39) probably benign Het
Fzd9 A T 5: 135,278,260 (GRCm39) C542S probably damaging Het
Gba1 A G 3: 89,115,671 (GRCm39) T460A probably benign Het
Gli2 C T 1: 118,769,792 (GRCm39) A587T probably benign Het
Gm11011 C T 2: 169,424,614 (GRCm39) probably benign Het
Gmppb A G 9: 107,927,033 (GRCm39) E68G probably benign Het
Gpld1 A G 13: 25,146,818 (GRCm39) N260S possibly damaging Het
Hipk3 G A 2: 104,263,552 (GRCm39) S900L probably damaging Het
Idi2l T G 13: 8,990,877 (GRCm39) probably benign Het
Ints6l A T X: 55,526,715 (GRCm39) M215L possibly damaging Het
Irx6 T A 8: 93,403,659 (GRCm39) L128Q probably damaging Het
Itga10 T C 3: 96,558,780 (GRCm39) S373P probably damaging Het
Jak1 T C 4: 101,011,732 (GRCm39) probably null Het
Jak2 C T 19: 29,289,157 (GRCm39) T1103I probably benign Het
Katnal1 A T 5: 148,815,734 (GRCm39) V401D possibly damaging Het
Krbox5 A G 13: 67,991,232 (GRCm39) probably benign Het
Lrp2 T A 2: 69,313,326 (GRCm39) probably benign Het
Map3k13 A G 16: 21,710,738 (GRCm39) H7R probably benign Het
Mrgprx3-ps A G 7: 46,959,766 (GRCm39) V75A probably benign Het
Nol6 C T 4: 41,123,584 (GRCm39) A55T probably benign Het
Opa1 G A 16: 29,440,349 (GRCm39) R818Q probably damaging Het
Opn4 T C 14: 34,319,081 (GRCm39) Y168C possibly damaging Het
Or8b35 A G 9: 37,904,141 (GRCm39) I118V probably benign Het
Phf21a T C 2: 92,161,122 (GRCm39) V330A possibly damaging Het
Phykpl A G 11: 51,484,423 (GRCm39) probably benign Het
Plcb1 T G 2: 134,655,534 (GRCm39) V38G probably benign Het
Plxna4 T A 6: 32,214,703 (GRCm39) T593S probably benign Het
Poll A T 19: 45,544,404 (GRCm39) I339N probably damaging Het
Rev3l A G 10: 39,700,890 (GRCm39) I1796V probably benign Het
Rnf103 G A 6: 71,486,686 (GRCm39) R439H probably damaging Het
Rrn3 G A 16: 13,617,746 (GRCm39) probably benign Het
Sec14l4 G A 11: 3,991,726 (GRCm39) probably benign Het
Sec23a A C 12: 59,053,985 (GRCm39) Y4* probably null Het
Senp6 T C 9: 80,040,265 (GRCm39) probably null Het
Serpinb6b A T 13: 33,162,220 (GRCm39) N221Y probably benign Het
Slc6a2 A G 8: 93,687,988 (GRCm39) E38G possibly damaging Het
Smap1 A T 1: 23,888,423 (GRCm39) L196I probably damaging Het
Sorbs2 C T 8: 46,248,167 (GRCm39) Q473* probably null Het
Sphkap C A 1: 83,254,690 (GRCm39) V1020F probably damaging Het
Srfbp1 T C 18: 52,621,614 (GRCm39) V225A probably benign Het
Srprb G A 9: 103,079,204 (GRCm39) P728S possibly damaging Het
Tcp1 T A 17: 13,139,306 (GRCm39) I162N probably benign Het
Tmem237 C A 1: 59,146,676 (GRCm39) A292S probably damaging Het
Tnfrsf21 C T 17: 43,349,104 (GRCm39) H239Y probably benign Het
Tnpo1 A G 13: 98,983,011 (GRCm39) F884L probably damaging Het
Trim7 A G 11: 48,740,328 (GRCm39) T142A probably damaging Het
Ttn T A 2: 76,616,024 (GRCm39) I14894F probably damaging Het
Tubgcp6 T C 15: 89,006,639 (GRCm39) R128G possibly damaging Het
Ube2d2b A G 5: 107,978,774 (GRCm39) T142A possibly damaging Het
Unc13c G T 9: 73,388,400 (GRCm39) L2129I probably benign Het
Ushbp1 T C 8: 71,843,697 (GRCm39) D247G probably damaging Het
Usp43 G A 11: 67,770,966 (GRCm39) A556V probably damaging Het
Zfp438 T A 18: 5,213,638 (GRCm39) H440L probably benign Het
Zfp518b C T 5: 38,830,113 (GRCm39) E631K possibly damaging Het
Other mutations in Tarm1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL03229:Tarm1 APN 7 3,545,413 (GRCm39) missense probably damaging 1.00
R0096:Tarm1 UTSW 7 3,546,067 (GRCm39) missense probably benign 0.23
R0282:Tarm1 UTSW 7 3,546,006 (GRCm39) missense probably damaging 1.00
R3768:Tarm1 UTSW 7 3,546,097 (GRCm39) missense probably benign 0.10
R4732:Tarm1 UTSW 7 3,545,416 (GRCm39) nonsense probably null
R4733:Tarm1 UTSW 7 3,545,416 (GRCm39) nonsense probably null
R4982:Tarm1 UTSW 7 3,537,612 (GRCm39) missense probably damaging 1.00
R5336:Tarm1 UTSW 7 3,546,084 (GRCm39) missense probably damaging 0.99
R6128:Tarm1 UTSW 7 3,537,720 (GRCm39) missense probably benign 0.04
R6746:Tarm1 UTSW 7 3,550,978 (GRCm39) missense probably benign 0.10
R6892:Tarm1 UTSW 7 3,546,006 (GRCm39) missense probably damaging 1.00
R7003:Tarm1 UTSW 7 3,545,939 (GRCm39) critical splice donor site probably null
R7414:Tarm1 UTSW 7 3,545,318 (GRCm39) missense probably benign 0.05
R8439:Tarm1 UTSW 7 3,546,037 (GRCm39) missense possibly damaging 0.69
R8925:Tarm1 UTSW 7 3,537,719 (GRCm39) missense possibly damaging 0.94
R8927:Tarm1 UTSW 7 3,537,719 (GRCm39) missense possibly damaging 0.94
R9608:Tarm1 UTSW 7 3,551,062 (GRCm39) start gained probably benign
R9687:Tarm1 UTSW 7 3,544,457 (GRCm39) missense probably benign
Predicted Primers PCR Primer
(F):5'- GTGACTAGAGCAGTGTGGGCAG -3'
(R):5'- CCACCACCGGGGTACAGTGA -3'

Sequencing Primer
(F):5'- caaatcccagcaaccacac -3'
(R):5'- CTTTGCAGTGCCAGAAAGC -3'
Posted On 2013-04-16