Incidental Mutation 'R2434:Kcnn1'
| ID |
250526 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Kcnn1
|
| Ensembl Gene |
ENSMUSG00000002908 |
| Gene Name |
potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1 |
| Synonyms |
SK1 |
| MMRRC Submission |
040395-MU
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R2434 (G1)
|
| Quality Score |
104 |
|
Status
|
Not validated
|
| Chromosome |
8 |
| Chromosomal Location |
71294693-71315902 bp(-) (GRCm39) |
| Type of Mutation |
small deletion (1 aa in frame mutation) |
| DNA Base Change (assembly) |
GTCCTCCTCCTCCTCCTCCTC to GTCCTCCTCCTCCTCCTC
at 71307810 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000148544
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000110078]
[ENSMUST00000110081]
[ENSMUST00000212086]
[ENSMUST00000212243]
[ENSMUST00000212414]
[ENSMUST00000212509]
[ENSMUST00000212611]
|
| AlphaFold |
no structure available at present |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000110078
|
| SMART Domains |
Protein: ENSMUSP00000105705
Gene: ENSMUSG00000002908
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
63 |
76 |
N/A |
INTRINSIC |
|
Pfam:SK_channel
|
90 |
208 |
3.7e-59 |
PFAM |
|
low complexity region
|
234 |
245 |
N/A |
INTRINSIC |
|
Pfam:Ion_trans_2
|
275 |
369 |
9.6e-16 |
PFAM |
|
CaMBD
|
382 |
461 |
1.99e-46 |
SMART |
|
low complexity region
|
467 |
487 |
N/A |
INTRINSIC |
|
low complexity region
|
507 |
516 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000110081
|
| SMART Domains |
Protein: ENSMUSP00000105708
Gene: ENSMUSG00000002908
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
63 |
76 |
N/A |
INTRINSIC |
|
Pfam:SK_channel
|
90 |
203 |
4.9e-51 |
PFAM |
|
low complexity region
|
234 |
245 |
N/A |
INTRINSIC |
|
Pfam:Ion_trans_2
|
274 |
368 |
1.7e-15 |
PFAM |
|
CaMBD
|
382 |
462 |
3.71e-46 |
SMART |
|
low complexity region
|
468 |
488 |
N/A |
INTRINSIC |
|
low complexity region
|
508 |
517 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000212084
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000212086
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000212243
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000212414
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000212509
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000212611
|
| Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.5%
- 10x: 97.0%
- 20x: 94.0%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Action potentials in vertebrate neurons are followed by an afterhyperpolarization (AHP) that may persist for several seconds and may have profound consequences for the firing pattern of the neuron. Each component of the AHP is kinetically distinct and is mediated by different calcium-activated potassium channels. The protein encoded by this gene is activated before membrane hyperpolarization and is thought to regulate neuronal excitability by contributing to the slow component of synaptic AHP. The encoded protein is an integral membrane protein that forms a voltage-independent calcium-activated channel with three other calmodulin-binding subunits. This gene is a member of the KCNN family of potassium channel genes. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null mice display normal hippocampal morphology and afterhyperpolarization currents. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 32 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Agbl5 |
A |
G |
5: 31,051,357 (GRCm39) |
Q493R |
probably damaging |
Het |
| Ank3 |
T |
C |
10: 69,837,948 (GRCm39) |
V785A |
probably damaging |
Het |
| Capsl |
A |
T |
15: 9,462,795 (GRCm39) |
H145L |
probably damaging |
Het |
| Carns1 |
A |
C |
19: 4,215,448 (GRCm39) |
C911W |
probably damaging |
Het |
| Celsr2 |
A |
C |
3: 108,311,795 (GRCm39) |
F1351V |
probably damaging |
Het |
| Cpne8 |
T |
C |
15: 90,393,714 (GRCm39) |
I432V |
probably benign |
Het |
| Cpxm1 |
A |
T |
2: 130,236,004 (GRCm39) |
I386N |
probably damaging |
Het |
| E2f5 |
T |
A |
3: 14,644,074 (GRCm39) |
D65E |
probably damaging |
Het |
| Eif3a |
T |
C |
19: 60,752,488 (GRCm39) |
|
probably benign |
Het |
| Fcrl2 |
A |
G |
3: 87,164,005 (GRCm39) |
Y375H |
probably damaging |
Het |
| Fip1l1 |
C |
A |
5: 74,707,485 (GRCm39) |
T196K |
possibly damaging |
Het |
| Fmo6 |
A |
T |
1: 162,744,439 (GRCm39) |
N484K |
probably benign |
Het |
| Foxred1 |
G |
T |
9: 35,116,954 (GRCm39) |
D345E |
probably damaging |
Het |
| Gbe1 |
T |
A |
16: 70,238,100 (GRCm39) |
N295K |
probably damaging |
Het |
| Gipc2 |
T |
A |
3: 151,843,317 (GRCm39) |
I107L |
probably benign |
Het |
| Lgr5 |
T |
A |
10: 115,423,311 (GRCm39) |
I30L |
probably benign |
Het |
| Nbea |
A |
T |
3: 55,554,881 (GRCm39) |
V2589E |
possibly damaging |
Het |
| Ncam2 |
A |
T |
16: 81,392,113 (GRCm39) |
N699I |
probably benign |
Het |
| Nlrp1b |
T |
C |
11: 71,047,552 (GRCm39) |
|
probably null |
Het |
| Or11l3 |
A |
G |
11: 58,515,937 (GRCm39) |
Y312H |
possibly damaging |
Het |
| Rnasel |
T |
C |
1: 153,630,396 (GRCm39) |
V304A |
probably damaging |
Het |
| Serinc4 |
C |
T |
2: 121,286,186 (GRCm39) |
R134H |
probably benign |
Het |
| Sim1 |
T |
A |
10: 50,784,054 (GRCm39) |
Y103N |
probably damaging |
Het |
| Slc47a1 |
A |
T |
11: 61,258,548 (GRCm39) |
|
probably null |
Het |
| Slc6a6 |
T |
A |
6: 91,712,193 (GRCm39) |
S241T |
probably benign |
Het |
| Son |
G |
T |
16: 91,451,575 (GRCm39) |
K107N |
probably damaging |
Het |
| St3gal6 |
T |
C |
16: 58,291,015 (GRCm39) |
T329A |
probably damaging |
Het |
| Stab2 |
G |
A |
10: 86,805,183 (GRCm39) |
P265L |
possibly damaging |
Het |
| Tmem199 |
G |
A |
11: 78,400,570 (GRCm39) |
T119I |
probably damaging |
Het |
| Ttc14 |
A |
G |
3: 33,855,227 (GRCm39) |
D125G |
probably benign |
Het |
| Vmn1r205 |
T |
A |
13: 22,776,524 (GRCm39) |
M193L |
probably benign |
Het |
| Vmn2r-ps158 |
A |
G |
7: 42,696,881 (GRCm39) |
Y646C |
probably damaging |
Het |
|
| Other mutations in Kcnn1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00492:Kcnn1
|
APN |
8 |
71,300,706 (GRCm39) |
missense |
probably benign |
|
|
IGL00498:Kcnn1
|
APN |
8 |
71,305,524 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL00792:Kcnn1
|
APN |
8 |
71,307,360 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL03122:Kcnn1
|
APN |
8 |
71,307,724 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03137:Kcnn1
|
APN |
8 |
71,303,381 (GRCm39) |
missense |
probably damaging |
0.97 |
|
IGL03222:Kcnn1
|
APN |
8 |
71,300,843 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03226:Kcnn1
|
APN |
8 |
71,299,135 (GRCm39) |
splice site |
probably benign |
|
|
R0586:Kcnn1
|
UTSW |
8 |
71,316,513 (GRCm39) |
unclassified |
probably benign |
|
|
R1218:Kcnn1
|
UTSW |
8 |
71,305,332 (GRCm39) |
missense |
probably benign |
0.07 |
|
R1437:Kcnn1
|
UTSW |
8 |
71,297,195 (GRCm39) |
missense |
probably benign |
0.03 |
|
R1510:Kcnn1
|
UTSW |
8 |
71,316,714 (GRCm39) |
unclassified |
probably benign |
|
|
R2860:Kcnn1
|
UTSW |
8 |
71,299,179 (GRCm39) |
missense |
probably benign |
0.36 |
|
R2861:Kcnn1
|
UTSW |
8 |
71,299,179 (GRCm39) |
missense |
probably benign |
0.36 |
|
R4327:Kcnn1
|
UTSW |
8 |
71,305,307 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4807:Kcnn1
|
UTSW |
8 |
71,300,822 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4947:Kcnn1
|
UTSW |
8 |
71,297,073 (GRCm39) |
missense |
probably benign |
0.02 |
|
R5265:Kcnn1
|
UTSW |
8 |
71,307,297 (GRCm39) |
missense |
probably benign |
0.07 |
|
R5685:Kcnn1
|
UTSW |
8 |
71,305,374 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6108:Kcnn1
|
UTSW |
8 |
71,307,800 (GRCm39) |
missense |
probably benign |
0.27 |
|
R6523:Kcnn1
|
UTSW |
8 |
71,299,169 (GRCm39) |
missense |
possibly damaging |
0.57 |
|
R7512:Kcnn1
|
UTSW |
8 |
71,307,293 (GRCm39) |
missense |
possibly damaging |
0.64 |
|
R8219:Kcnn1
|
UTSW |
8 |
71,305,499 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8310:Kcnn1
|
UTSW |
8 |
71,305,449 (GRCm39) |
missense |
possibly damaging |
0.83 |
|
R8809:Kcnn1
|
UTSW |
8 |
71,305,297 (GRCm39) |
critical splice donor site |
probably null |
|
|
R9084:Kcnn1
|
UTSW |
8 |
71,307,810 (GRCm39) |
small deletion |
probably benign |
|
|
R9308:Kcnn1
|
UTSW |
8 |
71,305,434 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- ATGCCTACCTTGGTGTATACAC -3'
(R):5'- TGAGTAGCCACAGCCACAATG -3'
Sequencing Primer
(F):5'- GTGTATACACCCCAGGACAG -3'
(R):5'- CACAATGGCAGCGTGGG -3'
|
| Posted On |
2014-11-12 |
Incidental Mutation