Incidental Mutation 'R2507:Cpne3'
ID 251293
Institutional Source Beutler Lab
Gene Symbol Cpne3
Ensembl Gene ENSMUSG00000028228
Gene Name copine III
Synonyms 5430428M23Rik, CPN3, PRO1071, 5730450C07Rik
MMRRC Submission 040413-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.143) question?
Stock # R2507 (G1)
Quality Score 225
Status Not validated
Chromosome 4
Chromosomal Location 19519254-19570108 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 19553871 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Asparagine to Lysine at position 53 (N53K)
Ref Sequence ENSEMBL: ENSMUSP00000029885 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000029885]
AlphaFold Q8BT60
Predicted Effect probably damaging
Transcript: ENSMUST00000029885
AA Change: N53K

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000029885
Gene: ENSMUSG00000028228
AA Change: N53K

DomainStartEndE-ValueType
C2 7 114 1.06e-10 SMART
C2 139 245 9.53e-13 SMART
low complexity region 253 262 N/A INTRINSIC
VWA 289 495 7.54e-18 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000108254
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.2%
  • 20x: 94.7%
Validation Efficiency
MGI Phenotype FUNCTION: Calcium-dependent membrane-binding proteins may regulate molecular events at the interface of the cell membrane and cytoplasm. This gene is one of several genes that encodes a calcium-dependent protein containing two N-terminal type II C2 domains and an integrin A domain-like sequence in the C-terminus. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 77 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700020N01Rik A G 10: 21,497,681 (GRCm39) probably benign Het
4930535I16Rik G A 4: 123,811,740 (GRCm39) probably benign Het
Akr1b1 C T 6: 34,286,999 (GRCm39) E186K probably damaging Het
Apc A T 18: 34,449,590 (GRCm39) N2128I possibly damaging Het
Api5 T C 2: 94,260,162 (GRCm39) I31M probably damaging Het
Armcx4 T G X: 133,596,128 (GRCm39) V2012G possibly damaging Het
Aurka T C 2: 172,212,365 (GRCm39) E4G probably benign Het
B4galt5 T A 2: 167,148,558 (GRCm39) M187L probably benign Het
Bsn T C 9: 107,993,313 (GRCm39) D813G probably damaging Het
Bub1 A T 2: 127,643,343 (GRCm39) D1000E probably benign Het
Cacna1f T G X: 7,492,687 (GRCm39) probably null Het
Cdh6 A G 15: 13,041,447 (GRCm39) I539T probably benign Het
Cdhr3 T C 12: 33,088,914 (GRCm39) D756G probably benign Het
Cenph A T 13: 100,907,744 (GRCm39) D85E probably benign Het
Chd9 C T 8: 91,760,615 (GRCm39) P2120L probably benign Het
Clec2h A G 6: 128,650,945 (GRCm39) N75S probably benign Het
Cnga1 C T 5: 72,776,404 (GRCm39) V20I possibly damaging Het
Cox4i1 T A 8: 121,400,029 (GRCm39) V51E possibly damaging Het
Cpt1b A G 15: 89,303,301 (GRCm39) F585L probably benign Het
Daam1 G A 12: 72,021,997 (GRCm39) D732N probably damaging Het
Dner A T 1: 84,560,801 (GRCm39) C115S probably damaging Het
Dop1a T A 9: 86,395,170 (GRCm39) F759Y probably damaging Het
Dst T C 1: 34,050,990 (GRCm39) Y29H probably damaging Het
Dst T C 1: 34,227,498 (GRCm39) V1875A possibly damaging Het
Duox1 A G 2: 122,163,619 (GRCm39) D817G probably benign Het
Emc2 A T 15: 43,375,094 (GRCm39) probably null Het
Erich3 A T 3: 154,404,296 (GRCm39) E51V probably null Het
Exoc2 A G 13: 31,066,348 (GRCm39) Y443H possibly damaging Het
Fbf1 T C 11: 116,046,252 (GRCm39) R200G probably benign Het
Fdxr G A 11: 115,162,806 (GRCm39) T100I probably damaging Het
Galnt11 C G 5: 25,452,610 (GRCm39) P41A probably damaging Het
Galnt4 A G 10: 98,945,148 (GRCm39) K291R possibly damaging Het
Gm12695 T A 4: 96,642,426 (GRCm39) E301V probably damaging Het
Gopc C T 10: 52,229,422 (GRCm39) probably null Het
Gria1 A T 11: 57,180,146 (GRCm39) T699S probably null Het
Gsr T G 8: 34,170,316 (GRCm39) D200E probably benign Het
Ikzf2 G A 1: 69,578,447 (GRCm39) A282V probably benign Het
Irak2 T C 6: 113,624,639 (GRCm39) I45T probably damaging Het
Irx1 T C 13: 72,107,939 (GRCm39) K248E probably damaging Het
Kcns3 A C 12: 11,142,087 (GRCm39) V204G possibly damaging Het
Lmo1 C A 7: 108,739,848 (GRCm39) M91I probably damaging Het
Map3k21 A G 8: 126,666,677 (GRCm39) D623G possibly damaging Het
Map4 A G 9: 109,866,551 (GRCm39) probably benign Het
Mark3 T A 12: 111,593,676 (GRCm39) V236E probably damaging Het
Med23 A G 10: 24,786,711 (GRCm39) D939G probably damaging Het
Mrgpra9 A G 7: 46,885,242 (GRCm39) C142R possibly damaging Het
N4bp2 T A 5: 65,947,404 (GRCm39) D11E probably benign Het
Ntng2 T C 2: 29,097,531 (GRCm39) N310S probably damaging Het
Or10ak7 T C 4: 118,791,122 (GRCm39) M308V probably benign Het
Or6b3 A G 1: 92,439,100 (GRCm39) S217P probably damaging Het
Pcolce A G 5: 137,605,313 (GRCm39) V260A possibly damaging Het
Pds5b C A 5: 150,679,893 (GRCm39) T533K possibly damaging Het
Pecr A G 1: 72,301,135 (GRCm39) Y268H probably benign Het
Phax T A 18: 56,719,956 (GRCm39) F299Y probably damaging Het
Phip T C 9: 82,797,392 (GRCm39) H537R possibly damaging Het
Pramel32 T A 4: 88,547,448 (GRCm39) K161N possibly damaging Het
Prpf39 T A 12: 65,104,589 (GRCm39) F551L probably benign Het
Ptch1 T G 13: 63,672,773 (GRCm39) E944A probably benign Het
Ralgapa1 G A 12: 55,764,986 (GRCm39) P889S probably damaging Het
Rpap1 A G 2: 119,610,535 (GRCm39) probably null Het
Rufy3 T C 5: 88,797,757 (GRCm39) S645P probably damaging Het
Samd1 CGAGGAGGAGGAGGAGGAGGA CGAGGAGGAGGAGGAGGA 8: 84,725,625 (GRCm39) probably benign Het
Spata7 G T 12: 98,624,709 (GRCm39) A172S probably benign Het
Stk35 A G 2: 129,643,435 (GRCm39) T140A probably damaging Het
Thop1 T G 10: 80,906,098 (GRCm39) M1R probably null Het
Tlr1 T C 5: 65,082,639 (GRCm39) Y646C probably damaging Het
Tpp2 A G 1: 44,040,609 (GRCm39) Y290C probably benign Het
Tpr A G 1: 150,268,695 (GRCm39) M1V probably null Het
Trim6 T C 7: 103,877,392 (GRCm39) F161L probably damaging Het
Ubash3b T C 9: 41,068,650 (GRCm39) K25E possibly damaging Het
Unc45b G A 11: 82,830,963 (GRCm39) probably null Het
Unc80 A G 1: 66,651,266 (GRCm39) N1537S possibly damaging Het
Usb1 T C 8: 96,069,752 (GRCm39) F100S probably damaging Het
Vmn1r17 C A 6: 57,338,244 (GRCm39) L40F probably damaging Het
Vmn1r233 A T 17: 21,214,110 (GRCm39) M280K probably benign Het
Zfp37 A T 4: 62,109,493 (GRCm39) C524S probably damaging Het
Zfp426 T C 9: 20,381,727 (GRCm39) K420R probably benign Het
Other mutations in Cpne3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01131:Cpne3 APN 4 19,543,318 (GRCm39) missense probably damaging 1.00
IGL01325:Cpne3 APN 4 19,535,229 (GRCm39) missense probably benign 0.00
IGL01467:Cpne3 APN 4 19,553,737 (GRCm39) missense probably benign
IGL02043:Cpne3 APN 4 19,543,340 (GRCm39) splice site probably null
IGL02992:Cpne3 APN 4 19,532,486 (GRCm39) missense probably benign
IGL03330:Cpne3 APN 4 19,553,774 (GRCm39) missense possibly damaging 0.63
LCD18:Cpne3 UTSW 4 19,563,382 (GRCm39) intron probably benign
R0507:Cpne3 UTSW 4 19,532,544 (GRCm39) splice site probably benign
R0652:Cpne3 UTSW 4 19,532,486 (GRCm39) missense probably benign
R1499:Cpne3 UTSW 4 19,526,336 (GRCm39) missense probably damaging 1.00
R1881:Cpne3 UTSW 4 19,535,266 (GRCm39) missense probably benign 0.03
R2007:Cpne3 UTSW 4 19,553,833 (GRCm39) missense probably damaging 1.00
R2147:Cpne3 UTSW 4 19,536,562 (GRCm39) missense probably benign
R4525:Cpne3 UTSW 4 19,523,206 (GRCm39) missense probably damaging 1.00
R4880:Cpne3 UTSW 4 19,540,827 (GRCm39) missense probably benign
R5219:Cpne3 UTSW 4 19,526,366 (GRCm39) missense probably damaging 1.00
R5518:Cpne3 UTSW 4 19,553,779 (GRCm39) missense probably benign 0.10
R5883:Cpne3 UTSW 4 19,552,314 (GRCm39) missense possibly damaging 0.67
R6850:Cpne3 UTSW 4 19,535,231 (GRCm39) missense possibly damaging 0.91
R6979:Cpne3 UTSW 4 19,533,098 (GRCm39) missense probably benign 0.01
R7395:Cpne3 UTSW 4 19,528,239 (GRCm39) missense probably damaging 0.96
R7948:Cpne3 UTSW 4 19,528,186 (GRCm39) critical splice donor site probably null
R8002:Cpne3 UTSW 4 19,528,232 (GRCm39) missense probably damaging 0.99
R8056:Cpne3 UTSW 4 19,532,426 (GRCm39) missense possibly damaging 0.60
R8099:Cpne3 UTSW 4 19,525,169 (GRCm39) missense possibly damaging 0.61
R8431:Cpne3 UTSW 4 19,526,316 (GRCm39) missense probably damaging 0.98
R8432:Cpne3 UTSW 4 19,535,227 (GRCm39) missense probably benign 0.26
R9029:Cpne3 UTSW 4 19,535,292 (GRCm39) missense possibly damaging 0.66
R9039:Cpne3 UTSW 4 19,540,770 (GRCm39) missense probably damaging 0.99
R9421:Cpne3 UTSW 4 19,536,561 (GRCm39) missense probably benign 0.33
R9425:Cpne3 UTSW 4 19,525,148 (GRCm39) missense probably damaging 1.00
R9604:Cpne3 UTSW 4 19,555,477 (GRCm39) missense probably benign 0.04
Predicted Primers PCR Primer
(F):5'- CCACCCAACTCTTTGATTTAAAATC -3'
(R):5'- ATGTCATTGTGCACCCCAC -3'

Sequencing Primer
(F):5'- GCCAATCACTGCTAAGTTGTGAG -3'
(R):5'- GTCTAAGTACTTCTTGGATCTGA -3'
Posted On 2014-12-04