Mutagenetix > Incidental Mutation

Incidental Mutation 'R2511:Vps45'

252861

Institutional Source

Beutler Lab

Gene Symbol

Vps45

Ensembl Gene

ENSMUSG00000015747

Gene Name

vacuolar protein sorting 45

Synonyms

mVps45

MMRRC Submission

040417-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.892) question?

Stock #

R2511 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

95907144-95965778 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 95948757 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 333 (T333A)

Ref Sequence

ENSEMBL: ENSMUSP00000015891 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000015891]

AlphaFold

P97390

Predicted Effect

probably benign
Transcript: ENSMUST00000015891
AA Change: T333A

PolyPhen 2 Score 0.010 (Sensitivity: 0.96; Specificity: 0.77)

SMART Domains

Protein: ENSMUSP00000015891
Gene: ENSMUSG00000015747
AA Change: T333A

Domain	Start	End	E-Value	Type
Pfam:Sec1	23	546	3e-119	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000131281

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.2%
20x: 94.7%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Vesicle mediated protein sorting plays an important role in segregation of intracellular molecules into distinct organelles. Genetic studies in yeast have identified more than 40 vacuolar protein sorting (VPS) genes involved in vesicle transport to vacuoles. This gene is a member of the Sec1 domain family, and shows a high degree of sequence similarity to mouse, rat and yeast Vps45. The exact function of this gene is not known, but its high expression in peripheral blood mononuclear cells suggests a role in trafficking proteins, including inflammatory mediators. Multiple alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jul 2013]

Allele List at MGI

Other mutations in this stock

Total: 103 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9330159F19Rik	T	A	10: 29,097,902 (GRCm39)	C100S	probably damaging	Het
Abcc8	C	T	7: 45,800,204 (GRCm39)	R526H	probably damaging	Het
Acad10	G	A	5: 121,769,630 (GRCm39)	P609S	probably benign	Het
Acod1	A	T	14: 103,288,775 (GRCm39)	D95V	probably damaging	Het
Acsm5	A	T	7: 119,129,677 (GRCm39)	I130F	possibly damaging	Het
Ago4	A	T	4: 126,410,864 (GRCm39)	D208E	probably damaging	Het
Agrn	A	T	4: 156,250,881 (GRCm39)		probably null	Het
Ankar	A	T	1: 72,697,853 (GRCm39)	I791K	probably damaging	Het
Ano10	A	G	9: 122,088,011 (GRCm39)	V364A	probably damaging	Het
Arhgap9	T	C	10: 127,164,854 (GRCm39)		probably null	Het
Arsi	G	A	18: 61,049,666 (GRCm39)	C183Y	probably damaging	Het
Ascl2	T	G	7: 142,521,953 (GRCm39)	E97A	probably damaging	Het
Bcl2a1a	C	T	9: 88,839,506 (GRCm39)	R135W	probably damaging	Het
Bms1	C	T	6: 118,368,114 (GRCm39)		probably null	Het
Bysl	T	A	17: 47,915,260 (GRCm39)	T163S	probably benign	Het
Card10	A	G	15: 78,664,473 (GRCm39)	I821T	probably benign	Het
Cc2d2a	A	T	5: 43,892,737 (GRCm39)	Q1433L	probably damaging	Het
Cchcr1	T	C	17: 35,841,410 (GRCm39)	S809P	probably benign	Het
Ccz1	G	T	5: 143,949,815 (GRCm39)	T70K	probably damaging	Het
Cdc25c	G	C	18: 34,871,292 (GRCm39)	L275V	probably damaging	Het
Cep164	A	T	9: 45,686,547 (GRCm39)	L729Q	probably damaging	Het
Clcn6	A	G	4: 148,101,951 (GRCm39)		probably null	Het
Clcn7	T	A	17: 25,374,420 (GRCm39)	V507E	probably damaging	Het
Cracdl	T	C	1: 37,664,381 (GRCm39)	M506V	probably benign	Het
Ctso	A	C	3: 81,840,041 (GRCm39)	T24P	probably damaging	Het
Dis3l2	A	T	1: 86,917,980 (GRCm39)	N543I	probably benign	Het
Dnah12	A	T	14: 26,491,907 (GRCm39)	Y1114F	possibly damaging	Het
Emx1	A	G	6: 85,181,033 (GRCm39)	D250G	probably benign	Het
Epha4	G	A	1: 77,488,339 (GRCm39)	A47V	possibly damaging	Het
Fam149b	A	C	14: 20,428,524 (GRCm39)	N341T	probably damaging	Het
Fsip2	A	G	2: 82,782,001 (GRCm39)	K62R	probably damaging	Het
Fsip2	T	C	2: 82,816,782 (GRCm39)	S4172P	probably benign	Het
Gbp3	A	G	3: 142,276,343 (GRCm39)	R480G	probably benign	Het
Get3	A	G	8: 85,746,395 (GRCm39)	V151A	possibly damaging	Het
Gja8	T	G	3: 96,827,033 (GRCm39)	T210P	probably damaging	Het
Gm5431	T	A	11: 48,779,536 (GRCm39)	N740I	probably benign	Het
Gm9930	T	C	10: 9,410,446 (GRCm39)		noncoding transcript	Het
Gstt4	C	T	10: 75,650,959 (GRCm39)	C221Y	probably benign	Het
Gzmg	A	T	14: 56,395,832 (GRCm39)	D42E	probably benign	Het
Hoxd12	G	A	2: 74,505,815 (GRCm39)	A129T	possibly damaging	Het
Hs2st1	G	A	3: 144,275,691 (GRCm39)		probably benign	Het
Ifnlr1	G	T	4: 135,432,559 (GRCm39)	D332Y	probably damaging	Het
Igsf10	T	C	3: 59,239,287 (GRCm39)	D298G	probably damaging	Het
Irf1	T	C	11: 53,664,617 (GRCm39)	V108A	probably damaging	Het
Jsrp1	C	G	10: 80,648,140 (GRCm39)	S36T	probably benign	Het
Kcnq5	T	A	1: 21,576,006 (GRCm39)	R233*	probably null	Het
Kif7	T	C	7: 79,352,012 (GRCm39)	K917E	probably damaging	Het
Krt7	A	C	15: 101,310,538 (GRCm39)	I62L	probably benign	Het
Lifr	A	G	15: 7,196,397 (GRCm39)	T194A	probably benign	Het
Ltbp2	T	C	12: 84,851,183 (GRCm39)		probably null	Het
Maco1	A	G	4: 134,531,699 (GRCm39)	S657P	probably damaging	Het
Man2c1	A	G	9: 57,048,672 (GRCm39)		probably null	Het
Met	T	C	6: 17,491,966 (GRCm39)	S243P	probably damaging	Het
Mllt10	C	A	2: 18,069,935 (GRCm39)	D30E	possibly damaging	Het
Mre11a	A	C	9: 14,707,065 (GRCm39)		probably null	Het
Mroh9	A	G	1: 162,866,514 (GRCm39)	S710P	probably benign	Het
Mvk	C	A	5: 114,588,459 (GRCm39)	Y116*	probably null	Het
Myh1	A	G	11: 67,096,423 (GRCm39)	I301V	probably benign	Het
Ncf1	T	C	5: 134,254,552 (GRCm39)	D184G	probably damaging	Het
Nxpe4	T	C	9: 48,304,533 (GRCm39)	F207L	probably damaging	Het
Or2ag18	G	T	7: 106,405,168 (GRCm39)	P167H	probably damaging	Het
Or2y1b	T	G	11: 49,209,048 (GRCm39)	L225R	probably damaging	Het
Or4k51	T	A	2: 111,584,661 (GRCm39)	N22K	probably benign	Het
Or52b1	A	T	7: 104,978,817 (GRCm39)	I194N	probably damaging	Het
Or5b24	T	A	19: 12,912,537 (GRCm39)	M145K	possibly damaging	Het
Or5w14	T	C	2: 87,541,392 (GRCm39)	N286S	probably damaging	Het
Pcdh1	G	A	18: 38,332,532 (GRCm39)	T296M	possibly damaging	Het
Pcdh15	A	G	10: 74,481,828 (GRCm39)	D391G	possibly damaging	Het
Pcdha7	C	A	18: 37,107,786 (GRCm39)	D270E	probably damaging	Het
Pgam1	C	A	19: 41,904,315 (GRCm39)	S137R	probably damaging	Het
Pitpnm2	T	C	5: 124,274,389 (GRCm39)	E240G	probably damaging	Het
Plce1	T	G	19: 38,748,498 (GRCm39)	I1729S	probably damaging	Het
Plppr4	G	T	3: 117,125,355 (GRCm39)	N161K	probably damaging	Het
Pramel27	G	A	4: 143,578,561 (GRCm39)	V274I	probably benign	Het
Prkce	T	A	17: 86,932,754 (GRCm39)	I578N	probably damaging	Het
Prss58	A	C	6: 40,874,734 (GRCm39)	S36A	probably damaging	Het
Ptprm	T	C	17: 67,000,773 (GRCm39)	H1128R	probably damaging	Het
Rgs9	T	C	11: 109,159,798 (GRCm39)	Y178C	probably benign	Het
Rubcn	T	C	16: 32,667,624 (GRCm39)	N179S	probably damaging	Het
Sh3bp1	C	T	15: 78,795,706 (GRCm39)	P612S	probably damaging	Het
Sh3bp5	G	A	14: 31,133,586 (GRCm39)	T82M	probably damaging	Het
Shank2	A	G	7: 143,965,314 (GRCm39)	Y974C	probably damaging	Het
Slc9c1	T	C	16: 45,365,099 (GRCm39)	I144T	possibly damaging	Het
Slf2	T	C	19: 44,930,045 (GRCm39)	I374T	possibly damaging	Het
Snx13	A	G	12: 35,188,080 (GRCm39)	D786G	probably benign	Het
Spcs3	A	G	8: 54,976,389 (GRCm39)	V151A	possibly damaging	Het
Sstr2	A	T	11: 113,515,749 (GRCm39)	I223F	probably damaging	Het
Stac3	T	C	10: 127,339,787 (GRCm39)		probably null	Het
Tas1r2	A	G	4: 139,387,162 (GRCm39)	N207S	probably damaging	Het
Tectb	C	G	19: 55,169,431 (GRCm39)		probably benign	Het
Tgm5	T	C	2: 120,907,429 (GRCm39)	E98G	possibly damaging	Het
Tktl2	A	G	8: 66,965,504 (GRCm39)	E354G	probably benign	Het
Tmem94	G	A	11: 115,682,787 (GRCm39)	R608H	probably damaging	Het
Tnrc6a	G	A	7: 122,770,315 (GRCm39)	V702I	probably damaging	Het
Trappc10	A	G	10: 78,047,357 (GRCm39)	S380P	possibly damaging	Het
Trim24	G	A	6: 37,880,587 (GRCm39)		probably null	Het
Ugt1a2	A	G	1: 88,128,846 (GRCm39)	Y163C	probably damaging	Het
Vmn1r215	A	G	13: 23,260,343 (GRCm39)	I128V	probably benign	Het
Vmn2r50	T	A	7: 9,781,640 (GRCm39)	E368D	possibly damaging	Het
Vmn2r59	T	C	7: 41,693,190 (GRCm39)	N470S	probably damaging	Het
Zbtb44	T	A	9: 30,965,539 (GRCm39)	D316E	probably damaging	Het
Zdhhc1	C	T	8: 106,210,190 (GRCm39)	V76M	probably benign	Het
Zfp235	T	C	7: 23,841,549 (GRCm39)	F656S	probably damaging	Het

Other mutations in Vps45

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00585:Vps45	APN	3	95,907,378 (GRCm39)	makesense	probably null
IGL00848:Vps45	APN	3	95,964,285 (GRCm39)	splice site	probably benign
IGL00915:Vps45	APN	3	95,953,662 (GRCm39)	critical splice donor site	probably null
IGL02143:Vps45	APN	3	95,926,958 (GRCm39)	missense	probably benign	0.00
IGL02143:Vps45	APN	3	95,941,133 (GRCm39)	missense	probably benign
IGL02247:Vps45	APN	3	95,950,236 (GRCm39)	missense	probably damaging	1.00
IGL02598:Vps45	APN	3	95,938,354 (GRCm39)	missense	probably benign	0.03
IGL03409:Vps45	APN	3	95,960,401 (GRCm39)	missense	probably benign	0.00
R0943:Vps45	UTSW	3	95,964,336 (GRCm39)	missense	probably benign	0.02
R1102:Vps45	UTSW	3	95,950,253 (GRCm39)	splice site	probably benign
R1540:Vps45	UTSW	3	95,955,658 (GRCm39)	missense	probably damaging	1.00
R1829:Vps45	UTSW	3	95,954,557 (GRCm39)	critical splice donor site	probably null
R1919:Vps45	UTSW	3	95,953,752 (GRCm39)	missense	probably benign	0.00
R2113:Vps45	UTSW	3	95,954,365 (GRCm39)	missense	probably benign	0.05
R2251:Vps45	UTSW	3	95,964,352 (GRCm39)	missense	probably benign	0.00
R4752:Vps45	UTSW	3	95,955,699 (GRCm39)	missense	possibly damaging	0.88
R4806:Vps45	UTSW	3	95,953,725 (GRCm39)	missense	probably benign	0.01
R4914:Vps45	UTSW	3	95,926,943 (GRCm39)	missense	probably damaging	0.98
R4915:Vps45	UTSW	3	95,926,943 (GRCm39)	missense	probably damaging	0.98
R4917:Vps45	UTSW	3	95,926,943 (GRCm39)	missense	probably damaging	0.98
R5180:Vps45	UTSW	3	95,953,683 (GRCm39)	missense	possibly damaging	0.94
R5288:Vps45	UTSW	3	95,965,086 (GRCm39)	start codon destroyed	probably null	1.00
R5454:Vps45	UTSW	3	95,926,969 (GRCm39)	missense	probably benign	0.21
R6397:Vps45	UTSW	3	95,950,164 (GRCm39)	missense	probably benign	0.13
R7247:Vps45	UTSW	3	95,948,717 (GRCm39)	missense	probably benign	0.02
R7449:Vps45	UTSW	3	95,954,448 (GRCm39)	critical splice acceptor site	probably null
R7460:Vps45	UTSW	3	95,955,699 (GRCm39)	missense	probably benign	0.00
R7795:Vps45	UTSW	3	95,926,936 (GRCm39)	missense	probably benign	0.13
R8462:Vps45	UTSW	3	95,941,091 (GRCm39)	missense	possibly damaging	0.62
R8490:Vps45	UTSW	3	95,948,661 (GRCm39)	missense	probably benign
R9076:Vps45	UTSW	3	95,960,345 (GRCm39)	splice site	probably benign
R9081:Vps45	UTSW	3	95,940,125 (GRCm39)	missense	probably benign	0.24
R9358:Vps45	UTSW	3	95,940,976 (GRCm39)	critical splice donor site	probably null
R9475:Vps45	UTSW	3	95,950,237 (GRCm39)	missense	probably damaging	1.00
R9608:Vps45	UTSW	3	95,940,982 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- AGGGTTATTCGCCTTTGCAGC -3'
(R):5'- TGGCCTCTATAAAGACCATAAGGG -3'

Sequencing Primer
(F):5'- TCCTCTGCCCAGCACAGTG -3'
(R):5'- GAGACCGAGTTTATTTGCATAGCCC -3'

Posted On

2014-12-04