Incidental Mutation 'R0312:Arhgap12'
| ID |
25326 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Arhgap12
|
| Ensembl Gene |
ENSMUSG00000041225 |
| Gene Name |
Rho GTPase activating protein 12 |
| Synonyms |
2810011M08Rik |
| MMRRC Submission |
038522-MU
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R0312 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
18 |
| Chromosomal Location |
6024448-6136102 bp(-) (GRCm39) |
| Type of Mutation |
intron |
| DNA Base Change (assembly) |
A to G
at 6061982 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000062584]
[ENSMUST00000077128]
[ENSMUST00000182038]
[ENSMUST00000182066]
[ENSMUST00000182383]
[ENSMUST00000182213]
[ENSMUST00000182559]
|
| AlphaFold |
Q8C0D4 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000062584
|
| SMART Domains |
Protein: ENSMUSP00000054209
Gene: ENSMUSG00000041225
| Domain | Start | End | E-Value | Type |
|---|
|
SH3
|
13 |
71 |
1.53e-3 |
SMART |
|
low complexity region
|
208 |
224 |
N/A |
INTRINSIC |
|
WW
|
264 |
296 |
3.39e-6 |
SMART |
|
WW
|
356 |
388 |
1.06e1 |
SMART |
|
PH
|
456 |
569 |
9.56e-11 |
SMART |
|
low complexity region
|
571 |
580 |
N/A |
INTRINSIC |
|
low complexity region
|
588 |
602 |
N/A |
INTRINSIC |
|
low complexity region
|
616 |
627 |
N/A |
INTRINSIC |
|
RhoGAP
|
659 |
833 |
5.47e-64 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000077128
|
| SMART Domains |
Protein: ENSMUSP00000076376
Gene: ENSMUSG00000041225
| Domain | Start | End | E-Value | Type |
|---|
|
SH3
|
13 |
71 |
1.53e-3 |
SMART |
|
low complexity region
|
208 |
224 |
N/A |
INTRINSIC |
|
WW
|
264 |
296 |
3.39e-6 |
SMART |
|
WW
|
356 |
388 |
1.06e1 |
SMART |
|
PH
|
431 |
544 |
9.56e-11 |
SMART |
|
low complexity region
|
546 |
555 |
N/A |
INTRINSIC |
|
low complexity region
|
563 |
577 |
N/A |
INTRINSIC |
|
low complexity region
|
591 |
602 |
N/A |
INTRINSIC |
|
RhoGAP
|
634 |
808 |
5.47e-64 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000181989
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000182038
|
| SMART Domains |
Protein: ENSMUSP00000138150
Gene: ENSMUSG00000041225
| Domain | Start | End | E-Value | Type |
|---|
|
SH3
|
13 |
71 |
1.53e-3 |
SMART |
|
low complexity region
|
208 |
224 |
N/A |
INTRINSIC |
|
WW
|
264 |
296 |
3.39e-6 |
SMART |
|
WW
|
356 |
388 |
1.06e1 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000182066
|
| SMART Domains |
Protein: ENSMUSP00000138496
Gene: ENSMUSG00000041225
| Domain | Start | End | E-Value | Type |
|---|
|
SH3
|
13 |
71 |
1.53e-3 |
SMART |
|
low complexity region
|
208 |
224 |
N/A |
INTRINSIC |
|
WW
|
264 |
296 |
3.39e-6 |
SMART |
|
WW
|
309 |
341 |
5.5e0 |
SMART |
|
PH
|
409 |
522 |
9.56e-11 |
SMART |
|
low complexity region
|
524 |
533 |
N/A |
INTRINSIC |
|
low complexity region
|
541 |
555 |
N/A |
INTRINSIC |
|
low complexity region
|
569 |
580 |
N/A |
INTRINSIC |
|
RhoGAP
|
612 |
786 |
5.47e-64 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000182101
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000182178
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000182614
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000182383
|
| SMART Domains |
Protein: ENSMUSP00000138444
Gene: ENSMUSG00000041225
| Domain | Start | End | E-Value | Type |
|---|
|
SH3
|
13 |
71 |
1.53e-3 |
SMART |
|
low complexity region
|
208 |
224 |
N/A |
INTRINSIC |
|
WW
|
264 |
296 |
3.39e-6 |
SMART |
|
WW
|
309 |
341 |
5.5e0 |
SMART |
|
PH
|
384 |
497 |
9.56e-11 |
SMART |
|
low complexity region
|
499 |
508 |
N/A |
INTRINSIC |
|
low complexity region
|
516 |
530 |
N/A |
INTRINSIC |
|
low complexity region
|
544 |
555 |
N/A |
INTRINSIC |
|
RhoGAP
|
587 |
761 |
5.47e-64 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000182213
|
| SMART Domains |
Protein: ENSMUSP00000138464
Gene: ENSMUSG00000041225
| Domain | Start | End | E-Value | Type |
|---|
|
SH3
|
13 |
71 |
1.53e-3 |
SMART |
|
low complexity region
|
208 |
224 |
N/A |
INTRINSIC |
|
WW
|
264 |
296 |
3.39e-6 |
SMART |
|
WW
|
356 |
388 |
1.06e1 |
SMART |
|
PH
|
461 |
574 |
9.56e-11 |
SMART |
|
low complexity region
|
576 |
585 |
N/A |
INTRINSIC |
|
low complexity region
|
593 |
607 |
N/A |
INTRINSIC |
|
low complexity region
|
621 |
632 |
N/A |
INTRINSIC |
|
RhoGAP
|
664 |
838 |
5.47e-64 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000182559
|
| SMART Domains |
Protein: ENSMUSP00000138585
Gene: ENSMUSG00000041225
| Domain | Start | End | E-Value | Type |
|---|
|
SH3
|
13 |
71 |
1.53e-3 |
SMART |
|
low complexity region
|
208 |
224 |
N/A |
INTRINSIC |
|
WW
|
264 |
296 |
3.39e-6 |
SMART |
|
WW
|
356 |
388 |
1.06e1 |
SMART |
|
PH
|
456 |
569 |
9.56e-11 |
SMART |
|
low complexity region
|
571 |
580 |
N/A |
INTRINSIC |
|
low complexity region
|
588 |
602 |
N/A |
INTRINSIC |
|
low complexity region
|
616 |
627 |
N/A |
INTRINSIC |
|
RhoGAP
|
659 |
833 |
5.47e-64 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000182322
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000182921
|
| Meta Mutation Damage Score |
0.0898 |
| Coding Region Coverage |
- 1x: 98.9%
- 3x: 97.9%
- 10x: 95.3%
- 20x: 90.3%
|
| Validation Efficiency |
100% (60/60) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of a large family of proteins that activate Rho-type guanosine triphosphate (GTP) metabolizing enzymes. The encoded protein may be involved in suppressing tumor formation by regulating cell invasion and adhesion. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Jul 2012]
PHENOTYPE: A null gene trap mutation resulted in no notable phenotype in homozygous mutant mice. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 62 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abcb5 |
G |
T |
12: 118,836,572 (GRCm39) |
A1113D |
probably damaging |
Het |
| Adcy1 |
G |
T |
11: 7,099,538 (GRCm39) |
A673S |
probably benign |
Het |
| Apob |
T |
A |
12: 8,059,034 (GRCm39) |
H2505Q |
probably benign |
Het |
| Bcl9 |
C |
T |
3: 97,116,727 (GRCm39) |
E656K |
probably benign |
Het |
| Bnc1 |
C |
T |
7: 81,627,072 (GRCm39) |
R106H |
possibly damaging |
Het |
| Ccdc54 |
T |
C |
16: 50,411,165 (GRCm39) |
K34E |
possibly damaging |
Het |
| Cfap65 |
G |
A |
1: 74,943,226 (GRCm39) |
R1600W |
probably damaging |
Het |
| Csmd1 |
A |
T |
8: 16,034,760 (GRCm39) |
N2470K |
probably damaging |
Het |
| Cspp1 |
T |
C |
1: 10,129,054 (GRCm39) |
|
probably benign |
Het |
| Dgkz |
A |
T |
2: 91,768,684 (GRCm39) |
I699N |
probably damaging |
Het |
| Dhx40 |
G |
A |
11: 86,662,775 (GRCm39) |
T639I |
probably damaging |
Het |
| Dlg1 |
A |
G |
16: 31,609,085 (GRCm39) |
T227A |
probably benign |
Het |
| Dnah10 |
G |
A |
5: 124,873,433 (GRCm39) |
|
probably benign |
Het |
| Dnah3 |
T |
A |
7: 119,644,882 (GRCm39) |
K1133M |
probably damaging |
Het |
| Dock5 |
G |
C |
14: 68,033,440 (GRCm39) |
F976L |
possibly damaging |
Het |
| Evc |
C |
T |
5: 37,485,885 (GRCm39) |
C97Y |
possibly damaging |
Het |
| Fbxw7 |
T |
C |
3: 84,874,876 (GRCm39) |
|
probably benign |
Het |
| Fggy |
A |
C |
4: 95,732,422 (GRCm39) |
D112A |
probably damaging |
Het |
| Fpgs |
A |
G |
2: 32,574,813 (GRCm39) |
Y435H |
probably damaging |
Het |
| Fryl |
T |
A |
5: 73,230,231 (GRCm39) |
H1642L |
probably damaging |
Het |
| G3bp1 |
T |
C |
11: 55,389,452 (GRCm39) |
F383L |
probably damaging |
Het |
| Gda |
T |
A |
19: 21,394,369 (GRCm39) |
I237F |
probably damaging |
Het |
| Glt1d1 |
A |
G |
5: 127,768,134 (GRCm39) |
N247S |
probably damaging |
Het |
| Gm7647 |
T |
C |
5: 95,110,839 (GRCm39) |
S7P |
probably benign |
Het |
| Gpr31b |
C |
T |
17: 13,270,498 (GRCm39) |
V224I |
probably damaging |
Het |
| Hlf |
G |
A |
11: 90,278,701 (GRCm39) |
P121L |
possibly damaging |
Het |
| Hsh2d |
G |
A |
8: 72,954,304 (GRCm39) |
D229N |
probably benign |
Het |
| Ism1 |
G |
T |
2: 139,520,592 (GRCm39) |
M1I |
probably null |
Het |
| Kansl1l |
T |
C |
1: 66,817,265 (GRCm39) |
N365S |
probably null |
Het |
| Lama1 |
T |
C |
17: 68,082,846 (GRCm39) |
L1368P |
possibly damaging |
Het |
| Lima1 |
A |
G |
15: 99,678,968 (GRCm39) |
V491A |
possibly damaging |
Het |
| Lrch1 |
G |
T |
14: 75,185,034 (GRCm39) |
H23N |
possibly damaging |
Het |
| Lrp1b |
A |
G |
2: 41,172,183 (GRCm39) |
V1488A |
probably damaging |
Het |
| Lrp8 |
T |
C |
4: 107,664,052 (GRCm39) |
|
probably benign |
Het |
| Lrrc8e |
A |
G |
8: 4,285,733 (GRCm39) |
S653G |
probably benign |
Het |
| Mnat1 |
A |
G |
12: 73,228,558 (GRCm39) |
T141A |
possibly damaging |
Het |
| Mpeg1 |
C |
A |
19: 12,439,767 (GRCm39) |
N408K |
probably damaging |
Het |
| Myo7b |
T |
C |
18: 32,147,390 (GRCm39) |
E51G |
possibly damaging |
Het |
| Myrf |
G |
C |
19: 10,195,526 (GRCm39) |
T428S |
probably benign |
Het |
| Naa35 |
A |
G |
13: 59,757,395 (GRCm39) |
T257A |
probably benign |
Het |
| Obox5 |
T |
A |
7: 15,491,485 (GRCm39) |
H8Q |
probably damaging |
Het |
| Or1j4 |
A |
T |
2: 36,740,372 (GRCm39) |
I105L |
probably benign |
Het |
| Or51q1c |
T |
C |
7: 103,653,232 (GRCm39) |
V250A |
probably damaging |
Het |
| Or5h26 |
A |
T |
16: 58,988,202 (GRCm39) |
F101L |
probably benign |
Het |
| Phldb2 |
G |
T |
16: 45,609,410 (GRCm39) |
T732N |
probably damaging |
Het |
| Phyhip |
G |
T |
14: 70,704,410 (GRCm39) |
A210S |
possibly damaging |
Het |
| Pik3r4 |
A |
G |
9: 105,563,409 (GRCm39) |
D1262G |
probably damaging |
Het |
| Pip |
G |
A |
6: 41,826,798 (GRCm39) |
E48K |
possibly damaging |
Het |
| Plk4 |
C |
T |
3: 40,767,982 (GRCm39) |
L74F |
probably damaging |
Het |
| Prdm14 |
G |
A |
1: 13,189,031 (GRCm39) |
R438W |
probably damaging |
Het |
| Rab19 |
G |
A |
6: 39,361,023 (GRCm39) |
R57H |
probably benign |
Het |
| Rtl1 |
G |
T |
12: 109,556,661 (GRCm39) |
P1726Q |
probably damaging |
Het |
| Sema6a |
G |
A |
18: 47,423,112 (GRCm39) |
|
probably null |
Het |
| Skint6 |
A |
T |
4: 112,666,297 (GRCm39) |
V1176D |
possibly damaging |
Het |
| Slc12a1 |
A |
G |
2: 125,067,948 (GRCm39) |
I1012V |
probably damaging |
Het |
| Slc1a3 |
C |
T |
15: 8,665,721 (GRCm39) |
M509I |
probably benign |
Het |
| Spata18 |
G |
A |
5: 73,824,224 (GRCm39) |
G35E |
probably benign |
Het |
| Spata31h1 |
A |
T |
10: 82,120,203 (GRCm39) |
I4269N |
probably damaging |
Het |
| Sspo |
C |
T |
6: 48,432,335 (GRCm39) |
P801L |
possibly damaging |
Het |
| Ugt2b37 |
C |
T |
5: 87,398,524 (GRCm39) |
G304D |
probably damaging |
Het |
| Vmn2r25 |
A |
T |
6: 123,805,539 (GRCm39) |
|
probably benign |
Het |
| Xrcc6 |
C |
A |
15: 81,911,423 (GRCm39) |
|
probably null |
Het |
|
| Other mutations in Arhgap12 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01468:Arhgap12
|
APN |
18 |
6,057,576 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL01652:Arhgap12
|
APN |
18 |
6,061,853 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
IGL01886:Arhgap12
|
APN |
18 |
6,027,613 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02716:Arhgap12
|
APN |
18 |
6,111,857 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
IGL03195:Arhgap12
|
APN |
18 |
6,031,766 (GRCm39) |
missense |
probably damaging |
1.00 |
|
eelier
|
UTSW |
18 |
6,061,930 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
eerie
|
UTSW |
18 |
6,111,734 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03134:Arhgap12
|
UTSW |
18 |
6,111,936 (GRCm39) |
missense |
probably benign |
0.22 |
|
R0330:Arhgap12
|
UTSW |
18 |
6,039,382 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0600:Arhgap12
|
UTSW |
18 |
6,064,433 (GRCm39) |
intron |
probably benign |
|
|
R0891:Arhgap12
|
UTSW |
18 |
6,026,699 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1123:Arhgap12
|
UTSW |
18 |
6,031,822 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1395:Arhgap12
|
UTSW |
18 |
6,037,058 (GRCm39) |
missense |
probably benign |
0.20 |
|
R1644:Arhgap12
|
UTSW |
18 |
6,112,340 (GRCm39) |
missense |
probably benign |
0.00 |
|
R2968:Arhgap12
|
UTSW |
18 |
6,111,732 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2970:Arhgap12
|
UTSW |
18 |
6,111,732 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3809:Arhgap12
|
UTSW |
18 |
6,037,057 (GRCm39) |
missense |
probably benign |
0.36 |
|
R3824:Arhgap12
|
UTSW |
18 |
6,061,930 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
R4181:Arhgap12
|
UTSW |
18 |
6,111,734 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4182:Arhgap12
|
UTSW |
18 |
6,111,734 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4183:Arhgap12
|
UTSW |
18 |
6,111,734 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4497:Arhgap12
|
UTSW |
18 |
6,111,774 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4498:Arhgap12
|
UTSW |
18 |
6,111,774 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5456:Arhgap12
|
UTSW |
18 |
6,112,170 (GRCm39) |
nonsense |
probably null |
|
|
R5539:Arhgap12
|
UTSW |
18 |
6,111,932 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5915:Arhgap12
|
UTSW |
18 |
6,037,016 (GRCm39) |
critical splice donor site |
probably null |
|
|
R6859:Arhgap12
|
UTSW |
18 |
6,111,803 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6960:Arhgap12
|
UTSW |
18 |
6,111,901 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7114:Arhgap12
|
UTSW |
18 |
6,028,056 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7285:Arhgap12
|
UTSW |
18 |
6,111,920 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7359:Arhgap12
|
UTSW |
18 |
6,065,709 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R8048:Arhgap12
|
UTSW |
18 |
6,052,883 (GRCm39) |
missense |
probably benign |
0.02 |
|
R8249:Arhgap12
|
UTSW |
18 |
6,027,635 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8523:Arhgap12
|
UTSW |
18 |
6,111,976 (GRCm39) |
missense |
probably benign |
0.12 |
|
R9110:Arhgap12
|
UTSW |
18 |
6,034,539 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R9444:Arhgap12
|
UTSW |
18 |
6,052,909 (GRCm39) |
nonsense |
probably null |
|
|
| Predicted Primers |
PCR Primer
(F):5'- TCCCAAGCACTTGCCAAAACTCTTA -3'
(R):5'- GCAACTGAAGAACATTTCGGAGGAGTA -3'
Sequencing Primer
(F):5'- AACACATTTTTTTCCAAGCTCTTAC -3'
(R):5'- AGCACTGACCGGGTGTATG -3'
|
| Posted On |
2013-04-16 |
Incidental Mutation