Incidental Mutation 'R2512:Ranbp3l'
ID253500
Institutional Source Beutler Lab
Gene Symbol Ranbp3l
Ensembl Gene ENSMUSG00000048424
Gene NameRAN binding protein 3-like
Synonyms
MMRRC Submission 040418-MU
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.104) question?
Stock #R2512 (G1)
Quality Score225
Status Not validated
Chromosome15
Chromosomal Location8967949-9067335 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) A to G at 8968465 bp
ZygosityHeterozygous
Amino Acid Change Threonine to Alanine at position 14 (T14A)
Ref Sequence ENSEMBL: ENSMUSP00000055750 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000053308] [ENSMUST00000166524]
Predicted Effect probably benign
Transcript: ENSMUST00000053308
AA Change: T14A

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
SMART Domains Protein: ENSMUSP00000055750
Gene: ENSMUSG00000048424
AA Change: T14A

DomainStartEndE-ValueType
low complexity region 19 31 N/A INTRINSIC
low complexity region 118 129 N/A INTRINSIC
low complexity region 191 197 N/A INTRINSIC
RanBD 302 430 4.52e-13 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000166524
AA Change: T14A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000130916
Gene: ENSMUSG00000048424
AA Change: T14A

DomainStartEndE-ValueType
low complexity region 19 31 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000228227
Predicted Effect noncoding transcript
Transcript: ENSMUST00000229662
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.4%
  • 20x: 95.2%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 71 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700001C19Rik T C 17: 47,413,726 T60A probably benign Het
2700049A03Rik A G 12: 71,173,171 T831A possibly damaging Het
Actg2 T A 6: 83,526,847 I72F probably damaging Het
Add1 A G 5: 34,616,686 T80A probably benign Het
Alpk2 G A 18: 65,350,520 T139M probably damaging Het
Aplp2 C T 9: 31,167,677 R325H probably damaging Het
Aptx G A 4: 40,694,917 P140S probably benign Het
C87499 T G 4: 88,628,958 M246L probably damaging Het
Carm1 A G 9: 21,575,412 probably null Het
Carmil2 A T 8: 105,697,393 I1293F probably benign Het
Cdh8 T C 8: 99,400,863 T39A probably benign Het
Col15a1 T A 4: 47,245,868 N206K possibly damaging Het
Copg2 C T 6: 30,896,656 probably null Het
Ctr9 T G 7: 111,046,871 I690S probably damaging Het
Dcaf8 T G 1: 172,189,035 I463S possibly damaging Het
Dcp1b G T 6: 119,206,512 A187S possibly damaging Het
Ddo T A 10: 40,632,939 D58E possibly damaging Het
Dkkl1 G T 7: 45,207,733 R137S probably damaging Het
Dxo A G 17: 34,837,742 N115S probably benign Het
Ep400 A T 5: 110,708,915 probably benign Het
F11 A G 8: 45,261,061 V7A probably benign Het
Fermt1 G T 2: 132,939,518 probably null Het
Fign A T 2: 63,979,799 F376I probably benign Het
Flg2 G T 3: 93,201,775 G370V probably damaging Het
Fndc3a A T 14: 72,556,275 D953E probably benign Het
Fsip2 A T 2: 82,978,167 H1610L probably benign Het
Gfra3 T C 18: 34,704,511 N145D probably benign Het
Inpp4b G T 8: 82,010,550 W525C probably damaging Het
Kremen1 CGGG CGGGGGG 11: 5,201,791 probably benign Het
Lgi2 A G 5: 52,537,965 *543R probably null Het
Lyn A G 4: 3,745,542 T114A probably benign Het
Lynx1 A G 15: 74,751,320 Y88H probably damaging Het
Map4 C A 9: 110,034,702 P332T possibly damaging Het
Mapk8ip3 A T 17: 24,914,703 C250* probably null Het
Metap1d A G 2: 71,522,610 H261R probably damaging Het
Mfrp T C 9: 44,102,538 V115A probably benign Het
Mtbp A G 15: 55,577,536 Y373C probably damaging Het
Mtor C A 4: 148,530,491 R1628S possibly damaging Het
Muc5b A G 7: 141,859,076 N1920D unknown Het
Myo1d T A 11: 80,779,717 M26L probably benign Het
Neb A C 2: 52,210,831 D643E probably damaging Het
Nme1 A G 11: 93,960,687 F108L possibly damaging Het
Olfr458 A G 6: 42,460,273 S249P probably damaging Het
Olfr893 G T 9: 38,209,374 C54F probably damaging Het
Pan2 T A 10: 128,304,457 D82E probably damaging Het
Pclo A G 5: 14,712,598 D3695G unknown Het
Pcnx4 A T 12: 72,556,799 probably null Het
Plg A G 17: 12,403,229 T479A probably benign Het
Plod3 G C 5: 136,988,146 A50P probably benign Het
Ptgis T C 2: 167,207,276 D372G probably damaging Het
Rcc1l A T 5: 134,166,669 V230D probably damaging Het
Reln T C 5: 21,979,690 D1609G possibly damaging Het
Rif1 GCCACCA GCCA 2: 52,110,324 probably benign Het
Ryr1 G A 7: 29,103,542 L696F possibly damaging Het
Sacs T A 14: 61,203,080 D858E probably benign Het
Sec16a C T 2: 26,439,025 V993I probably benign Het
Skint5 T A 4: 113,630,419 I901F unknown Het
Slc17a3 A T 13: 23,846,247 I114F probably benign Het
Slc17a7 T A 7: 45,168,864 L71Q probably damaging Het
Slc43a2 T C 11: 75,570,577 S452P probably damaging Het
Smarca4 A G 9: 21,635,698 N173S possibly damaging Het
Tbc1d21 T C 9: 58,362,912 Y161C probably damaging Het
Tpsab1 C A 17: 25,345,107 C94F probably damaging Het
Ubr5 G A 15: 38,002,319 P1496L probably damaging Het
Unc80 G T 1: 66,671,608 A2679S possibly damaging Het
Vdac1 T A 11: 52,384,077 V184E probably damaging Het
Vmn2r24 T A 6: 123,787,026 S287R probably benign Het
Vmn2r91 T C 17: 18,135,786 F572L probably benign Het
Vps13b G A 15: 35,884,555 E3125K probably benign Het
Ythdf3 A G 3: 16,204,895 N406S possibly damaging Het
Zfp708 T C 13: 67,071,187 K158E probably damaging Het
Other mutations in Ranbp3l
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01746:Ranbp3l APN 15 9063087 nonsense probably null
IGL01982:Ranbp3l APN 15 9058746 missense probably damaging 0.99
IGL02549:Ranbp3l APN 15 8968441 missense possibly damaging 0.66
IGL03170:Ranbp3l APN 15 9000787 missense probably damaging 1.00
IGL03338:Ranbp3l APN 15 9060859 missense probably damaging 1.00
PIT4791001:Ranbp3l UTSW 15 9060748 missense probably damaging 1.00
R0137:Ranbp3l UTSW 15 9062987 missense probably damaging 1.00
R0383:Ranbp3l UTSW 15 9063104 missense possibly damaging 0.48
R0699:Ranbp3l UTSW 15 9058769 critical splice donor site probably null
R1517:Ranbp3l UTSW 15 9065001 nonsense probably null
R1629:Ranbp3l UTSW 15 9064988 missense probably damaging 0.99
R1922:Ranbp3l UTSW 15 9057125 missense probably damaging 1.00
R2058:Ranbp3l UTSW 15 9000817 missense probably damaging 1.00
R2265:Ranbp3l UTSW 15 9057113 missense probably damaging 0.99
R4077:Ranbp3l UTSW 15 9060757 missense probably damaging 1.00
R4079:Ranbp3l UTSW 15 9060757 missense probably damaging 1.00
R4179:Ranbp3l UTSW 15 9057198 missense possibly damaging 0.62
R5227:Ranbp3l UTSW 15 9007312 missense probably damaging 0.99
R5265:Ranbp3l UTSW 15 9007203 missense probably benign 0.01
R5722:Ranbp3l UTSW 15 9000832 missense probably damaging 0.98
R5751:Ranbp3l UTSW 15 9063089 missense probably damaging 1.00
R5976:Ranbp3l UTSW 15 9002093 missense possibly damaging 0.85
R6504:Ranbp3l UTSW 15 8968462 missense probably benign 0.27
R6850:Ranbp3l UTSW 15 9058727 missense probably damaging 1.00
R6940:Ranbp3l UTSW 15 9011919 missense probably benign 0.03
R7009:Ranbp3l UTSW 15 9062984 missense probably damaging 1.00
R7018:Ranbp3l UTSW 15 9007285 missense probably benign 0.00
R7019:Ranbp3l UTSW 15 9057160 missense probably damaging 0.99
R7250:Ranbp3l UTSW 15 9011980 missense probably benign
R7352:Ranbp3l UTSW 15 8968358 start gained probably benign
Predicted Primers PCR Primer
(F):5'- AAACCCTGGCATGCTTTTCGAG -3'
(R):5'- TTTAAATCAACAGCGAGGCCAC -3'

Sequencing Primer
(F):5'- GCATGCTTTTCGAGGAGTAAATG -3'
(R):5'- AGCGAGGCCACGGGAAC -3'
Posted On2014-12-04