Mutagenetix > Incidental Mutation

Incidental Mutation 'R0317:Rab11a'

25467

Institutional Source

Beutler Lab

Gene Symbol

Rab11a

Ensembl Gene

ENSMUSG00000004771

Gene Name

RAB11A, member RAS oncogene family

Synonyms

MMRRC Submission

038527-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R0317 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

64622582-64645038 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 64632835 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 24 (S24P)

Ref Sequence

ENSEMBL: ENSMUSP00000125755 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000004892] [ENSMUST00000167569] [ENSMUST00000169058] [ENSMUST00000171100] [ENSMUST00000172298]

AlphaFold

P62492

Predicted Effect

probably benign
Transcript: ENSMUST00000004892

SMART Domains

Protein: ENSMUSP00000004892
Gene: ENSMUSG00000004771

Domain	Start	End	E-Value	Type
RAB	12	153	1.47e-85	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000165083

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000166857

Predicted Effect

probably damaging
Transcript: ENSMUST00000167569
AA Change: S24P

PolyPhen 2 Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000125755
Gene: ENSMUSG00000004771
AA Change: S24P

Domain	Start	End	E-Value	Type
Pfam:Ras	5	44	1e-6	PFAM

Predicted Effect

unknown
Transcript: ENSMUST00000168366
AA Change: S39P

SMART Domains

Protein: ENSMUSP00000128150
Gene: ENSMUSG00000004771
AA Change: S39P

Domain	Start	End	E-Value	Type
Pfam:Ras	1	59	2.5e-17	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000169058

SMART Domains

Protein: ENSMUSP00000129729
Gene: ENSMUSG00000004771

Domain	Start	End	E-Value	Type
RAB	12	153	5.11e-85	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000171100
AA Change: S35P

PolyPhen 2 Score 0.904 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000127968
Gene: ENSMUSG00000004771
AA Change: S35P

Domain	Start	End	E-Value	Type
Pfam:Ras	1	55	1e-15	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000172298
AA Change: S154P

PolyPhen 2 Score 0.357 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000129163
Gene: ENSMUSG00000004771
AA Change: S154P

Domain	Start	End	E-Value	Type
RAB	12	175	1.01e-115	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000172444

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000197528

Coding Region Coverage

1x: 99.1%
3x: 98.2%
10x: 96.1%
20x: 92.8%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene belongs to the Rab family of the small GTPase superfamily. It is associated with both constitutive and regulated secretory pathways, and may be involved in protein transport. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2011]

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca13	T	C	11: 9,243,459 (GRCm39)	V1774A	probably damaging	Het
Adam34	G	A	8: 44,105,288 (GRCm39)	P119L	probably benign	Het
Ap3b2	T	C	7: 81,113,429 (GRCm39)		probably null	Het
Arfip2	G	A	7: 105,286,430 (GRCm39)	T124M	probably damaging	Het
Arhgef26	T	C	3: 62,330,965 (GRCm39)	S560P	probably damaging	Het
Bcl11a	A	T	11: 24,122,697 (GRCm39)		probably null	Het
Cab39	A	G	1: 85,776,881 (GRCm39)	E322G	probably damaging	Het
Cad	C	A	5: 31,229,665 (GRCm39)	P1382Q	probably benign	Het
Cc2d2a	T	C	5: 43,864,243 (GRCm39)		probably null	Het
Cela2a	A	T	4: 141,549,011 (GRCm39)		probably null	Het
Cert1	C	T	13: 96,770,629 (GRCm39)	R487*	probably null	Het
Ces1e	A	C	8: 93,950,667 (GRCm39)	I38S	probably benign	Het
Ces1f	A	T	8: 93,990,019 (GRCm39)	F364I	probably benign	Het
Chgb	A	G	2: 132,635,731 (GRCm39)	T558A	probably benign	Het
Cnpy4	C	T	5: 138,191,074 (GRCm39)	Q217*	probably null	Het
Crlf1	A	G	8: 70,951,249 (GRCm39)	T43A	probably benign	Het
Dnah7b	T	A	1: 46,173,816 (GRCm39)	M707K	probably damaging	Het
Ets2	G	A	16: 95,513,193 (GRCm39)	S123N	probably damaging	Het
Fry	T	C	5: 150,394,933 (GRCm39)	F304S	probably damaging	Het
Gadd45gip1	G	A	8: 85,560,745 (GRCm39)	R120H	probably benign	Het
Gbf1	A	G	19: 46,242,459 (GRCm39)	T96A	probably benign	Het
Ggn	T	A	7: 28,870,515 (GRCm39)	M1K	probably null	Het
Gm5239	A	G	18: 35,669,969 (GRCm39)	T112A	probably benign	Het
Insyn2b	C	A	11: 34,352,826 (GRCm39)	D289E	possibly damaging	Het
Kifbp	A	T	10: 62,413,861 (GRCm39)		probably null	Het
Lrrc15	A	T	16: 30,092,561 (GRCm39)	H259Q	probably benign	Het
Lysmd4	A	G	7: 66,876,045 (GRCm39)	Y236C	probably damaging	Het
Med29	T	C	7: 28,086,284 (GRCm39)	T175A	possibly damaging	Het
Mfsd12	G	T	10: 81,193,633 (GRCm39)	D68Y	probably damaging	Het
Myh1	T	C	11: 67,108,338 (GRCm39)	L1308P	probably damaging	Het
Nphp4	T	A	4: 152,636,388 (GRCm39)		probably null	Het
Or8g30	A	G	9: 39,230,757 (GRCm39)	I51T	probably benign	Het
Pdhx	A	G	2: 102,858,625 (GRCm39)	V393A	probably benign	Het
Pgm5	A	G	19: 24,801,763 (GRCm39)	I155T	possibly damaging	Het
Pgr	A	T	9: 8,965,023 (GRCm39)	I889F	probably benign	Het
Phactr4	T	A	4: 132,114,241 (GRCm39)	K51I	probably damaging	Het
Pum2	T	A	12: 8,778,754 (GRCm39)	I468K	possibly damaging	Het
Rasef	T	C	4: 73,666,799 (GRCm39)	Q160R	probably damaging	Het
Rbl2	A	G	8: 91,813,772 (GRCm39)	D339G	probably benign	Het
Recql5	A	G	11: 115,785,499 (GRCm39)	S666P	probably benign	Het
Rfc1	A	T	5: 65,453,395 (GRCm39)		probably null	Het
Scarb1	A	G	5: 125,366,756 (GRCm39)	V59A	probably damaging	Het
Slc2a4	C	T	11: 69,837,182 (GRCm39)	V85M	probably damaging	Het
Slc6a12	A	G	6: 121,335,584 (GRCm39)	I291V	possibly damaging	Het
Slco3a1	A	C	7: 74,154,174 (GRCm39)	Y104D	probably damaging	Het
Suz12	T	A	11: 79,889,904 (GRCm39)	D13E	probably damaging	Het
Tlr1	G	T	5: 65,083,310 (GRCm39)	C422*	probably null	Het
Tmco1	T	C	1: 167,153,462 (GRCm39)	V114A	probably damaging	Het
Trpa1	T	C	1: 14,951,856 (GRCm39)	T948A	probably benign	Het
Tub	A	T	7: 108,620,134 (GRCm39)	N93Y	probably damaging	Het
Ufsp2	G	A	8: 46,445,270 (GRCm39)		probably null	Het
Veph1	T	C	3: 66,079,396 (GRCm39)	D373G	probably benign	Het
Vmn1r206	A	G	13: 22,805,130 (GRCm39)	S26P	possibly damaging	Het
Vmn2r1	T	C	3: 63,989,240 (GRCm39)	S60P	possibly damaging	Het
Wdcp	A	G	12: 4,901,583 (GRCm39)	S480G	probably benign	Het
Wnk4	T	C	11: 101,159,630 (GRCm39)	S612P	probably benign	Het
Zfp503	T	C	14: 22,036,527 (GRCm39)	K130E	probably benign	Het
Zkscan16	G	A	4: 58,957,602 (GRCm39)	C628Y	possibly damaging	Het

Other mutations in Rab11a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02474:Rab11a	APN	9	64,633,929 (GRCm39)	missense	possibly damaging	0.89
IGL02687:Rab11a	APN	9	64,633,980 (GRCm39)	missense	probably damaging	1.00
R4527:Rab11a	UTSW	9	64,632,850 (GRCm39)	missense	probably benign	0.38
R7860:Rab11a	UTSW	9	64,635,613 (GRCm39)	nonsense	probably null
R8848:Rab11a	UTSW	9	64,624,264 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ACATGACTGAAGTGCAACCTGCAAA -3'
(R):5'- GGCCATGCTGAACTAAGTCTTAGTCTTT -3'

Sequencing Primer
(F):5'- GAAGTGCAACCTGCAAAAACTG -3'
(R):5'- gaggcagaggcaggcag -3'

Posted On

2013-04-16