Incidental Mutation 'R2914:Mrpl9'
| ID |
254789 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Mrpl9
|
| Ensembl Gene |
ENSMUSG00000028140 |
| Gene Name |
mitochondrial ribosomal protein L9 |
| Synonyms |
C330013D18Rik, 8030480E20Rik |
| MMRRC Submission |
040501-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably essential
(E-score: 0.953)
|
| Stock # |
R2914 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
3 |
| Chromosomal Location |
94350631-94355831 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
C to A
at 94351108 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Threonine to Lysine
at position 96
(T96K)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000142859
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000029786]
[ENSMUST00000196143]
[ENSMUST00000203883]
[ENSMUST00000204548]
|
| AlphaFold |
Q99N94 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000029786
AA Change: T96K
PolyPhen 2
Score 0.990 (Sensitivity: 0.72; Specificity: 0.97)
|
| SMART Domains |
Protein: ENSMUSP00000029786
Gene: ENSMUSG00000028140
AA Change: T96K
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Ribosomal_L9_N
|
91 |
138 |
4.3e-16 |
PFAM |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000098876
AA Change: T96K
PolyPhen 2
Score 0.991 (Sensitivity: 0.71; Specificity: 0.97)
|
| SMART Domains |
Protein: ENSMUSP00000096475
Gene: ENSMUSG00000028140
AA Change: T96K
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Ribosomal_L9_N
|
91 |
137 |
2.2e-17 |
PFAM |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000196143
AA Change: T96K
PolyPhen 2
Score 0.991 (Sensitivity: 0.71; Specificity: 0.97)
|
| SMART Domains |
Protein: ENSMUSP00000142859
Gene: ENSMUSG00000028140
AA Change: T96K
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Ribosomal_L9_N
|
91 |
138 |
5.2e-18 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000199009
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000203883
|
| SMART Domains |
Protein: ENSMUSP00000145484
Gene: ENSMUSG00000028141
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
26 |
44 |
N/A |
INTRINSIC |
|
Pfam:ODC_AZ
|
91 |
189 |
4.3e-15 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000204548
|
| SMART Domains |
Protein: ENSMUSP00000145079
Gene: ENSMUSG00000028141
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
26 |
44 |
N/A |
INTRINSIC |
|
| Meta Mutation Damage Score |
0.2319 |
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.4%
- 20x: 95.5%
|
| Validation Efficiency |
100% (41/41) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This is a nuclear gene encoding a protein component of the 39S subunit of the mitochondrial ribosome. Alternative splicing results in multiple transcript variants. A pseudogene of this gene is found on chromosome 8. [provided by RefSeq, Jul 2014]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 38 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adgrf3 |
A |
G |
5: 30,401,992 (GRCm39) |
S679P |
probably damaging |
Het |
| Cd109 |
CATTTATTTATTTATTTATTTATTTATTTATTTAT |
CATTTATTTATTTATTTATTTATTTATTTATTTATTTAT |
9: 78,619,782 (GRCm39) |
|
probably benign |
Het |
| Cryl1 |
T |
C |
14: 57,513,375 (GRCm39) |
E282G |
probably benign |
Het |
| Dbn1 |
A |
G |
13: 55,630,234 (GRCm39) |
F45L |
probably damaging |
Het |
| Dclre1b |
T |
C |
3: 103,715,430 (GRCm39) |
M105V |
probably damaging |
Het |
| Defb12 |
T |
C |
8: 19,164,830 (GRCm39) |
N3D |
probably benign |
Het |
| Eprs1 |
G |
A |
1: 185,111,939 (GRCm39) |
|
probably null |
Het |
| Fa2h |
T |
C |
8: 112,120,281 (GRCm39) |
D35G |
probably damaging |
Het |
| Fdxacb1 |
C |
T |
9: 50,679,699 (GRCm39) |
A39V |
probably benign |
Het |
| Fras1 |
G |
A |
5: 96,881,774 (GRCm39) |
R2502K |
probably benign |
Het |
| Grm1 |
A |
G |
10: 10,955,601 (GRCm39) |
S228P |
probably benign |
Het |
| Il27ra |
T |
A |
8: 84,758,242 (GRCm39) |
|
probably benign |
Het |
| Lrrtm1 |
A |
T |
6: 77,221,962 (GRCm39) |
Q473L |
probably damaging |
Het |
| Macf1 |
T |
A |
4: 123,369,704 (GRCm39) |
I121F |
probably damaging |
Het |
| Mael |
A |
T |
1: 166,054,179 (GRCm39) |
F188I |
probably damaging |
Het |
| Mapk4 |
C |
T |
18: 74,068,236 (GRCm39) |
A232T |
probably benign |
Het |
| Musk |
C |
A |
4: 58,366,938 (GRCm39) |
L511I |
probably damaging |
Het |
| Mutyh |
G |
A |
4: 116,672,826 (GRCm39) |
D60N |
probably damaging |
Het |
| Nckap5 |
A |
T |
1: 125,954,274 (GRCm39) |
|
probably null |
Het |
| Nktr |
T |
C |
9: 121,578,670 (GRCm39) |
|
probably benign |
Het |
| Otud7b |
C |
A |
3: 96,063,272 (GRCm39) |
A837E |
probably benign |
Het |
| Pigb |
A |
T |
9: 72,947,060 (GRCm39) |
|
probably null |
Het |
| Pip4k2b |
G |
T |
11: 97,613,260 (GRCm39) |
N245K |
probably benign |
Het |
| Ptprd |
T |
A |
4: 75,865,338 (GRCm39) |
D1464V |
probably damaging |
Het |
| Rab22a |
A |
G |
2: 173,537,074 (GRCm39) |
N98S |
probably benign |
Het |
| Rictor |
G |
T |
15: 6,799,476 (GRCm39) |
|
probably null |
Het |
| Rims1 |
T |
C |
1: 22,844,711 (GRCm39) |
E32G |
probably damaging |
Het |
| Slx4ip |
A |
G |
2: 136,909,511 (GRCm39) |
|
probably null |
Het |
| Snx19 |
G |
A |
9: 30,344,828 (GRCm39) |
|
probably benign |
Het |
| Snx29 |
C |
T |
16: 11,265,317 (GRCm39) |
R516W |
probably damaging |
Het |
| Tcof1 |
T |
C |
18: 60,949,156 (GRCm39) |
D1253G |
possibly damaging |
Het |
| Tmod1 |
A |
T |
4: 46,092,259 (GRCm39) |
N203I |
probably damaging |
Het |
| Tmprss15 |
T |
C |
16: 78,759,078 (GRCm39) |
N880S |
probably benign |
Het |
| Ttn |
A |
T |
2: 76,599,979 (GRCm39) |
I19065N |
probably damaging |
Het |
| Txk |
T |
C |
5: 72,881,794 (GRCm39) |
N154S |
probably damaging |
Het |
| Utp20 |
A |
G |
10: 88,590,337 (GRCm39) |
|
probably null |
Het |
| Vmn1r65 |
T |
A |
7: 6,012,040 (GRCm39) |
I65F |
possibly damaging |
Het |
| Yes1 |
T |
C |
5: 32,797,926 (GRCm39) |
S82P |
probably benign |
Het |
|
| Other mutations in Mrpl9 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00590:Mrpl9
|
APN |
3 |
94,351,003 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01609:Mrpl9
|
APN |
3 |
94,352,001 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02131:Mrpl9
|
APN |
3 |
94,352,020 (GRCm39) |
critical splice donor site |
probably null |
|
|
IGL02212:Mrpl9
|
APN |
3 |
94,351,124 (GRCm39) |
splice site |
probably null |
|
|
IGL02976:Mrpl9
|
APN |
3 |
94,355,084 (GRCm39) |
unclassified |
probably benign |
|
|
PIT4382001:Mrpl9
|
UTSW |
3 |
94,355,136 (GRCm39) |
missense |
probably benign |
|
|
R0445:Mrpl9
|
UTSW |
3 |
94,352,198 (GRCm39) |
unclassified |
probably benign |
|
|
R2424:Mrpl9
|
UTSW |
3 |
94,351,113 (GRCm39) |
missense |
probably benign |
0.08 |
|
R3119:Mrpl9
|
UTSW |
3 |
94,355,097 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3724:Mrpl9
|
UTSW |
3 |
94,355,073 (GRCm39) |
splice site |
probably null |
|
|
R5801:Mrpl9
|
UTSW |
3 |
94,355,103 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
R6286:Mrpl9
|
UTSW |
3 |
94,351,097 (GRCm39) |
missense |
probably benign |
0.07 |
|
R6767:Mrpl9
|
UTSW |
3 |
94,357,528 (GRCm39) |
unclassified |
probably benign |
|
|
R6824:Mrpl9
|
UTSW |
3 |
94,350,677 (GRCm39) |
missense |
possibly damaging |
0.64 |
|
R7130:Mrpl9
|
UTSW |
3 |
94,354,597 (GRCm39) |
missense |
probably benign |
0.09 |
|
R7705:Mrpl9
|
UTSW |
3 |
94,351,075 (GRCm39) |
missense |
possibly damaging |
0.52 |
|
R8052:Mrpl9
|
UTSW |
3 |
94,351,050 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R8744:Mrpl9
|
UTSW |
3 |
94,355,082 (GRCm39) |
unclassified |
probably benign |
|
|
R8765:Mrpl9
|
UTSW |
3 |
94,355,129 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R9084:Mrpl9
|
UTSW |
3 |
94,354,558 (GRCm39) |
unclassified |
probably benign |
|
|
R9214:Mrpl9
|
UTSW |
3 |
94,355,126 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R9701:Mrpl9
|
UTSW |
3 |
94,351,892 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
Z1177:Mrpl9
|
UTSW |
3 |
94,350,680 (GRCm39) |
missense |
probably benign |
0.01 |
|
| Predicted Primers |
PCR Primer
(F):5'- TTGTTCTCTGCGGACACTCG -3'
(R):5'- GAACTGTTAGGCTTCTCTTTACACAG -3'
Sequencing Primer
(F):5'- GGACACTCGCTCACCCCAG -3'
(R):5'- GTTAGGCTTCTCTTTACACAGTTAAC -3'
|
| Posted On |
2014-12-29 |
Incidental Mutation