Mutagenetix > Incidental Mutation

Incidental Mutation 'R2937:Pdss1'

255038

Institutional Source

Beutler Lab

Gene Symbol

Pdss1

Ensembl Gene

ENSMUSG00000026784

Gene Name

prenyl (solanesyl) diphosphate synthase, subunit 1

Synonyms

2610203G20Rik, mSPS1, 2700031G06Rik, Tprt

MMRRC Submission

040514-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R2937 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

22785534-22830278 bp(+) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

T to A at 22796799 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000121873 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000053729] [ENSMUST00000135621] [ENSMUST00000141215] [ENSMUST00000141215] [ENSMUST00000152170]

AlphaFold

Q33DR2

Predicted Effect

probably null
Transcript: ENSMUST00000053729

SMART Domains

Protein: ENSMUSP00000055689
Gene: ENSMUSG00000026784

Domain	Start	End	E-Value	Type
low complexity region	4	15	N/A	INTRINSIC
Pfam:polyprenyl_synt	117	366	1.5e-68	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000122676

Predicted Effect

probably benign
Transcript: ENSMUST00000135621

Predicted Effect

probably null
Transcript: ENSMUST00000141215

Predicted Effect

probably null
Transcript: ENSMUST00000141215

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000148072

Predicted Effect

probably null
Transcript: ENSMUST00000152170

SMART Domains

Protein: ENSMUSP00000121873
Gene: ENSMUSG00000026784

Domain	Start	End	E-Value	Type
low complexity region	4	15	N/A	INTRINSIC
Pfam:polyprenyl_synt	114	276	6e-35	PFAM

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.4%
20x: 95.6%

Validation Efficiency

100% (73/73)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is an enzyme that elongates the prenyl side-chain of coenzyme Q, or ubiquinone, one of the key elements in the respiratory chain. The gene product catalyzes the formation of all trans-polyprenyl pyrophosphates from isopentyl diphosphate in the assembly of polyisoprenoid side chains, the first step in coenzyme Q biosynthesis. The protein may be peripherally associated with the inner mitochondrial membrane, though no transit peptide has been definitively identified to date. Defects in this gene are a cause of coenzyme Q10 deficiency. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 73 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acsm1	A	G	7: 119,258,350 (GRCm39)	E481G	probably damaging	Het
Anks1b	C	T	10: 89,912,928 (GRCm39)	T351M	probably damaging	Het
Arhgap45	T	A	10: 79,864,836 (GRCm39)	M933K	probably damaging	Het
Asph	A	C	4: 9,542,314 (GRCm39)		probably benign	Het
Bace2	T	C	16: 97,213,388 (GRCm39)		probably null	Het
Cacna1b	A	G	2: 24,496,540 (GRCm39)	V125A	probably benign	Het
Cbarp	T	C	10: 79,967,603 (GRCm39)	D539G	probably damaging	Het
Ccdc59	A	T	10: 105,677,388 (GRCm39)	K9M	possibly damaging	Het
Cdh15	G	A	8: 123,588,763 (GRCm39)	R279Q	probably damaging	Het
Cdr1	T	G	X: 60,228,968 (GRCm39)	D66A	unknown	Het
Cela3b	A	G	4: 137,150,574 (GRCm39)	I208T	probably benign	Het
Cfap91	A	T	16: 38,131,400 (GRCm39)	I471N	possibly damaging	Het
Clca3a2	T	A	3: 144,519,679 (GRCm39)	T232S	probably benign	Het
Col1a2	G	A	6: 4,519,882 (GRCm39)		probably benign	Het
Col1a2	A	T	6: 4,520,788 (GRCm39)	Q375L	possibly damaging	Het
Cpd	T	C	11: 76,702,685 (GRCm39)	N561S	probably damaging	Het
Csn1s1	A	T	5: 87,824,995 (GRCm39)	Q221L	possibly damaging	Het
Depdc5	G	A	5: 33,058,965 (GRCm39)		probably null	Het
Dnah10	T	C	5: 124,896,476 (GRCm39)		probably null	Het
Dsg2	T	C	18: 20,712,185 (GRCm39)	F107S	probably damaging	Het
Dthd1	A	G	5: 63,000,300 (GRCm39)	I541V	probably benign	Het
Eml6	G	A	11: 29,783,049 (GRCm39)		probably benign	Het
Fermt2	A	C	14: 45,741,948 (GRCm39)		probably null	Het
Gimap8	A	T	6: 48,635,730 (GRCm39)	R498S	possibly damaging	Het
Glis1	A	G	4: 107,489,488 (GRCm39)	N692D	possibly damaging	Het
Grtp1	G	A	8: 13,239,755 (GRCm39)		probably benign	Het
Hecw1	G	T	13: 14,420,421 (GRCm39)	Q1001K	possibly damaging	Het
Hydin	T	C	8: 111,130,927 (GRCm39)	V606A	possibly damaging	Het
Krt33b	T	A	11: 99,914,835 (GRCm39)	N388I	probably benign	Het
Lipf	T	C	19: 33,950,438 (GRCm39)	Y277H	probably damaging	Het
Lmod1	A	G	1: 135,291,654 (GRCm39)	K170E	probably benign	Het
Lrrtm1	A	T	6: 77,220,635 (GRCm39)	M31L	probably benign	Het
Man1c1	A	G	4: 134,430,263 (GRCm39)	I173T	possibly damaging	Het
Med17	T	C	9: 15,187,187 (GRCm39)	K196E	probably damaging	Het
Mmp25	T	A	17: 23,863,765 (GRCm39)	I22F	probably benign	Het
Nrg3	T	A	14: 38,092,965 (GRCm39)	N540I	possibly damaging	Het
Nsun5	C	T	5: 135,404,317 (GRCm39)	Q375*	probably null	Het
Or52ad1	T	C	7: 102,995,272 (GRCm39)	M288V	probably benign	Het
Or52r1c	T	A	7: 102,735,548 (GRCm39)	H269Q	probably benign	Het
Pcdh1	G	T	18: 38,322,815 (GRCm39)	A1006E	probably benign	Het
Plaa	G	A	4: 94,457,696 (GRCm39)	A758V	probably damaging	Het
Prl6a1	T	A	13: 27,499,303 (GRCm39)	W24R	probably damaging	Het
Ptk7	T	C	17: 46,883,476 (GRCm39)	H863R	probably damaging	Het
Rbm10	T	C	X: 20,513,934 (GRCm39)	L429P	possibly damaging	Het
Rhou	T	C	8: 124,387,880 (GRCm39)	I204T	possibly damaging	Het
Serpind1	G	T	16: 17,154,972 (GRCm39)	M266I	probably benign	Het
Sgcg	A	T	14: 61,467,074 (GRCm39)	F175L	probably damaging	Het
Slc2a2	T	G	3: 28,772,920 (GRCm39)	C238G	probably damaging	Het
Slc39a8	A	G	3: 135,592,584 (GRCm39)	M420V	probably benign	Het
Slc7a9	C	A	7: 35,163,167 (GRCm39)	Y457*	probably null	Het
Smpd3	C	T	8: 106,991,452 (GRCm39)	R367H	probably damaging	Het
Sntb2	T	C	8: 107,662,729 (GRCm39)	V99A	probably benign	Het
Specc1l	T	G	10: 75,094,965 (GRCm39)	I796R	probably damaging	Het
Stfa2l1	G	T	16: 35,980,316 (GRCm39)	V29F	probably damaging	Het
Synrg	T	C	11: 83,885,180 (GRCm39)	F455S	probably damaging	Het
Tap2	T	C	17: 34,431,328 (GRCm39)	V422A	possibly damaging	Het
Tcf7	A	T	11: 52,173,610 (GRCm39)		probably null	Het
Tcp10a	A	G	17: 7,597,173 (GRCm39)	Y110C	probably damaging	Het
Thoc1	T	A	18: 9,959,255 (GRCm39)	S43R	probably damaging	Het
Tlr1	A	G	5: 65,083,251 (GRCm39)	V442A	probably damaging	Het
Tmub1	A	G	5: 24,650,922 (GRCm39)	*261Q	probably null	Het
Trpc3	G	A	3: 36,688,532 (GRCm39)	R836*	probably null	Het
Tsbp1	A	T	17: 34,640,836 (GRCm39)	H57L	possibly damaging	Het
Ube2u	T	C	4: 100,381,495 (GRCm39)	S185P	possibly damaging	Het
Vamp5	A	G	6: 72,346,323 (GRCm39)	V91A	probably benign	Het
Vcp	A	G	4: 42,980,846 (GRCm39)	Y755H	probably damaging	Het
Vmn1r35	A	T	6: 66,655,950 (GRCm39)	M73K	possibly damaging	Het
Vmn2r12	C	T	5: 109,239,397 (GRCm39)	E389K	probably damaging	Het
Wdfy3	A	T	5: 102,091,988 (GRCm39)	F450L	probably benign	Het
Xpo4	G	T	14: 57,841,897 (GRCm39)	Q473K	probably benign	Het
Xpo7	A	G	14: 70,909,130 (GRCm39)	I797T	probably damaging	Het
Xylt1	C	A	7: 117,234,011 (GRCm39)	Q513K	probably benign	Het
Zfp229	T	C	17: 21,964,484 (GRCm39)	F238S	probably damaging	Het

Other mutations in Pdss1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01419:Pdss1	APN	2	22,825,589 (GRCm39)	missense	possibly damaging	0.49
IGL02512:Pdss1	APN	2	22,802,658 (GRCm39)	missense	probably damaging	1.00
IGL02691:Pdss1	APN	2	22,805,253 (GRCm39)	missense	probably benign
LCD18:Pdss1	UTSW	2	22,790,980 (GRCm39)	intron	probably benign
R0190:Pdss1	UTSW	2	22,796,843 (GRCm39)	missense	probably damaging	0.97
R0576:Pdss1	UTSW	2	22,805,425 (GRCm39)	critical splice acceptor site	probably null
R0732:Pdss1	UTSW	2	22,791,324 (GRCm39)	missense	probably benign	0.00
R1682:Pdss1	UTSW	2	22,805,531 (GRCm39)	missense	probably damaging	1.00
R1808:Pdss1	UTSW	2	22,796,846 (GRCm39)	nonsense	probably null
R2430:Pdss1	UTSW	2	22,819,605 (GRCm39)	nonsense	probably null
R2938:Pdss1	UTSW	2	22,796,799 (GRCm39)	splice site	probably null
R4181:Pdss1	UTSW	2	22,805,517 (GRCm39)	missense	probably damaging	1.00
R4302:Pdss1	UTSW	2	22,805,517 (GRCm39)	missense	probably damaging	1.00
R4323:Pdss1	UTSW	2	22,802,608 (GRCm39)	splice site	probably benign
R5076:Pdss1	UTSW	2	22,789,929 (GRCm39)	critical splice acceptor site	probably null
R5108:Pdss1	UTSW	2	22,796,895 (GRCm39)	missense	possibly damaging	0.94
R6333:Pdss1	UTSW	2	22,791,778 (GRCm39)	missense	probably damaging	1.00
R7138:Pdss1	UTSW	2	22,802,681 (GRCm39)	missense	probably damaging	1.00
R7286:Pdss1	UTSW	2	22,825,653 (GRCm39)	critical splice donor site	probably null
R8169:Pdss1	UTSW	2	22,791,824 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- AGCTACCCATCAGAAAAGTGG -3'
(R):5'- CTTAGATGCGCTTCTTAAGTGAG -3'

Sequencing Primer
(F):5'- CCATCAGAAAAGTGGCAATACTTG -3'
(R):5'- AAGTAACTGACCGGGCAT -3'

Posted On

2014-12-29