Incidental Mutation 'R3015:Aff3'
| ID |
257618 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Aff3
|
| Ensembl Gene |
ENSMUSG00000037138 |
| Gene Name |
AF4/FMR2 family, member 3 |
| Synonyms |
LAF-4, 3222402O04Rik, Laf4 |
| MMRRC Submission |
040536-MU
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R3015 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
1 |
| Chromosomal Location |
38216407-38704036 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to T
at 38249649 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Isoleucine to Asparagine
at position 486
(I486N)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000092637
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000039827]
[ENSMUST00000095027]
|
| AlphaFold |
P51827 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000039827
AA Change: I485N
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
| SMART Domains |
Protein: ENSMUSP00000044128
Gene: ENSMUSG00000037138
AA Change: I485N
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:AF-4
|
20 |
170 |
4.9e-63 |
PFAM |
|
Pfam:AF-4
|
160 |
1226 |
N/A |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000095027
AA Change: I486N
PolyPhen 2
Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
|
| SMART Domains |
Protein: ENSMUSP00000092637
Gene: ENSMUSG00000037138
AA Change: I486N
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:AF-4
|
20 |
172 |
1.7e-47 |
PFAM |
|
Pfam:AF-4
|
161 |
1226 |
3.8e-268 |
PFAM |
|
| Meta Mutation Damage Score |
0.0591 |
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.2%
- 20x: 94.9%
|
| Validation Efficiency |
100% (38/38) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a tissue-restricted nuclear transcriptional activator that is preferentially expressed in lymphoid tissue. Isolation of this protein initially defined a highly conserved LAF4/MLLT2 gene family of nuclear transcription factors that may function in lymphoid development and oncogenesis. In some ALL patients, this gene has been found fused to the gene for MLL. Multiple alternatively spliced transcript variants that encode different proteins have been found for this gene. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 36 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adamts9 |
T |
C |
6: 92,849,913 (GRCm39) |
H380R |
probably benign |
Het |
| Bltp1 |
T |
A |
3: 36,929,611 (GRCm39) |
F76Y |
probably damaging |
Het |
| Cfap44 |
A |
C |
16: 44,230,832 (GRCm39) |
D271A |
probably benign |
Het |
| Dbndd2 |
T |
A |
2: 164,330,270 (GRCm39) |
V34D |
probably damaging |
Het |
| Erc2 |
T |
A |
14: 27,733,732 (GRCm39) |
|
probably null |
Het |
| Fcgbp |
T |
C |
7: 27,774,838 (GRCm39) |
|
probably benign |
Het |
| Frem3 |
T |
C |
8: 81,417,402 (GRCm39) |
S2036P |
probably damaging |
Het |
| Golph3l |
A |
G |
3: 95,499,024 (GRCm39) |
|
probably benign |
Het |
| Grm7 |
G |
T |
6: 110,623,309 (GRCm39) |
V161F |
probably damaging |
Het |
| Ifrd2 |
G |
A |
9: 107,467,221 (GRCm39) |
G60S |
probably null |
Het |
| Ints9 |
T |
A |
14: 65,187,727 (GRCm39) |
W3R |
probably benign |
Het |
| Jmjd1c |
A |
G |
10: 66,993,711 (GRCm39) |
E64G |
probably damaging |
Het |
| Katnip |
T |
A |
7: 125,465,512 (GRCm39) |
H1321Q |
probably damaging |
Het |
| Matn3 |
A |
C |
12: 9,002,217 (GRCm39) |
Q143P |
probably damaging |
Het |
| Myo18a |
A |
T |
11: 77,749,846 (GRCm39) |
|
probably benign |
Het |
| Nop9 |
T |
C |
14: 55,988,631 (GRCm39) |
S358P |
probably benign |
Het |
| Pard3b |
T |
C |
1: 62,384,037 (GRCm39) |
S801P |
probably damaging |
Het |
| Pax2 |
T |
C |
19: 44,804,463 (GRCm39) |
F268L |
probably damaging |
Het |
| Pik3r1 |
A |
G |
13: 101,823,771 (GRCm39) |
I538T |
probably damaging |
Het |
| Plekha8 |
T |
C |
6: 54,599,107 (GRCm39) |
S214P |
probably benign |
Het |
| Ppme1 |
T |
C |
7: 99,981,084 (GRCm39) |
H352R |
probably damaging |
Het |
| Ppp1r26 |
A |
C |
2: 28,342,314 (GRCm39) |
D648A |
probably damaging |
Het |
| Prom1 |
C |
A |
5: 44,191,733 (GRCm39) |
V337F |
probably damaging |
Het |
| Rapgef4 |
T |
C |
2: 72,028,717 (GRCm39) |
I378T |
probably damaging |
Het |
| Rnf115 |
T |
C |
3: 96,661,675 (GRCm39) |
S43P |
probably damaging |
Het |
| Rnf216 |
A |
G |
5: 143,061,480 (GRCm39) |
|
probably null |
Het |
| Scn7a |
G |
T |
2: 66,530,240 (GRCm39) |
Q702K |
probably benign |
Het |
| Shisal2b |
T |
A |
13: 104,994,899 (GRCm39) |
I83F |
possibly damaging |
Het |
| Slc2a1 |
T |
A |
4: 118,989,340 (GRCm39) |
N13K |
probably damaging |
Het |
| Tnr |
A |
G |
1: 159,715,829 (GRCm39) |
I864V |
probably benign |
Het |
| Tspyl3 |
A |
T |
2: 153,066,650 (GRCm39) |
M196K |
probably damaging |
Het |
| Ttn |
A |
T |
2: 76,641,587 (GRCm39) |
L5176Q |
possibly damaging |
Het |
| Umod |
T |
C |
7: 119,071,763 (GRCm39) |
D326G |
probably damaging |
Het |
| Upf2 |
A |
G |
2: 5,980,890 (GRCm39) |
D492G |
unknown |
Het |
| Vash1 |
A |
G |
12: 86,732,194 (GRCm39) |
T126A |
probably benign |
Het |
| Vsig10l |
T |
A |
7: 43,116,881 (GRCm39) |
I574K |
possibly damaging |
Het |
|
| Other mutations in Aff3 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01364:Aff3
|
APN |
1 |
38,574,762 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02263:Aff3
|
APN |
1 |
38,574,680 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02962:Aff3
|
APN |
1 |
38,574,737 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03003:Aff3
|
APN |
1 |
38,248,651 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03180:Aff3
|
APN |
1 |
38,574,743 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03389:Aff3
|
APN |
1 |
38,249,430 (GRCm39) |
missense |
possibly damaging |
0.62 |
|
PIT4377001:Aff3
|
UTSW |
1 |
38,578,044 (GRCm39) |
missense |
probably damaging |
0.99 |
|
PIT4544001:Aff3
|
UTSW |
1 |
38,249,443 (GRCm39) |
missense |
probably benign |
0.01 |
|
R0004:Aff3
|
UTSW |
1 |
38,308,807 (GRCm39) |
missense |
possibly damaging |
0.46 |
|
R0004:Aff3
|
UTSW |
1 |
38,308,807 (GRCm39) |
missense |
possibly damaging |
0.46 |
|
R0026:Aff3
|
UTSW |
1 |
38,242,974 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0279:Aff3
|
UTSW |
1 |
38,574,650 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0344:Aff3
|
UTSW |
1 |
38,243,013 (GRCm39) |
missense |
probably benign |
|
|
R0375:Aff3
|
UTSW |
1 |
38,244,021 (GRCm39) |
missense |
possibly damaging |
0.46 |
|
R0605:Aff3
|
UTSW |
1 |
38,249,068 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0613:Aff3
|
UTSW |
1 |
38,249,004 (GRCm39) |
missense |
probably benign |
0.09 |
|
R0742:Aff3
|
UTSW |
1 |
38,666,189 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1156:Aff3
|
UTSW |
1 |
38,243,991 (GRCm39) |
missense |
probably benign |
|
|
R1255:Aff3
|
UTSW |
1 |
38,243,965 (GRCm39) |
splice site |
probably null |
|
|
R1448:Aff3
|
UTSW |
1 |
38,230,364 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1760:Aff3
|
UTSW |
1 |
38,368,945 (GRCm39) |
splice site |
probably benign |
|
|
R1780:Aff3
|
UTSW |
1 |
38,574,783 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1855:Aff3
|
UTSW |
1 |
38,249,385 (GRCm39) |
missense |
probably benign |
0.23 |
|
R2011:Aff3
|
UTSW |
1 |
38,246,996 (GRCm39) |
missense |
probably benign |
0.01 |
|
R2331:Aff3
|
UTSW |
1 |
38,243,971 (GRCm39) |
splice site |
probably null |
|
|
R2965:Aff3
|
UTSW |
1 |
38,248,791 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2970:Aff3
|
UTSW |
1 |
38,574,103 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R3763:Aff3
|
UTSW |
1 |
38,291,770 (GRCm39) |
splice site |
probably benign |
|
|
R4174:Aff3
|
UTSW |
1 |
38,247,008 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R4436:Aff3
|
UTSW |
1 |
38,248,768 (GRCm39) |
missense |
possibly damaging |
0.75 |
|
R4661:Aff3
|
UTSW |
1 |
38,666,209 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R5069:Aff3
|
UTSW |
1 |
38,220,694 (GRCm39) |
critical splice donor site |
probably null |
|
|
R5566:Aff3
|
UTSW |
1 |
38,220,505 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6023:Aff3
|
UTSW |
1 |
38,257,451 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6209:Aff3
|
UTSW |
1 |
38,232,670 (GRCm39) |
missense |
probably benign |
0.28 |
|
R6467:Aff3
|
UTSW |
1 |
38,247,098 (GRCm39) |
missense |
probably benign |
0.25 |
|
R6748:Aff3
|
UTSW |
1 |
38,574,327 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6862:Aff3
|
UTSW |
1 |
38,445,578 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R6880:Aff3
|
UTSW |
1 |
38,666,209 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R6880:Aff3
|
UTSW |
1 |
38,574,243 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7187:Aff3
|
UTSW |
1 |
38,257,478 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R8322:Aff3
|
UTSW |
1 |
38,220,742 (GRCm39) |
missense |
possibly damaging |
0.65 |
|
R8329:Aff3
|
UTSW |
1 |
38,244,135 (GRCm39) |
missense |
probably benign |
0.13 |
|
R8737:Aff3
|
UTSW |
1 |
38,308,810 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9093:Aff3
|
UTSW |
1 |
38,291,738 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
R9146:Aff3
|
UTSW |
1 |
38,359,200 (GRCm39) |
missense |
probably benign |
0.27 |
|
R9149:Aff3
|
UTSW |
1 |
38,220,397 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9157:Aff3
|
UTSW |
1 |
38,249,559 (GRCm39) |
missense |
probably benign |
0.45 |
|
R9446:Aff3
|
UTSW |
1 |
38,574,337 (GRCm39) |
missense |
probably benign |
0.30 |
|
R9581:Aff3
|
UTSW |
1 |
38,249,266 (GRCm39) |
missense |
probably benign |
|
|
R9645:Aff3
|
UTSW |
1 |
38,249,121 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9674:Aff3
|
UTSW |
1 |
38,248,864 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1176:Aff3
|
UTSW |
1 |
38,368,953 (GRCm39) |
nonsense |
probably null |
|
|
| Predicted Primers |
PCR Primer
(F):5'- TACACTTTTGCTGCCAGGGG -3'
(R):5'- TGCTTCACGGATACAGAAAAGC -3'
Sequencing Primer
(F):5'- CCAGGGGCCTTGTTTGC -3'
(R):5'- AGCTGGGCATCCTCTGTAC -3'
|
| Posted On |
2015-01-11 |
Incidental Mutation