Mutagenetix > Incidental Mutation

Incidental Mutation 'R3409:Nudcd1'

258432

Institutional Source

Beutler Lab

Gene Symbol

Nudcd1

Ensembl Gene

ENSMUSG00000038736

Gene Name

NudC domain containing 1

Synonyms

4921532K09Rik

MMRRC Submission

040627-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.887) question?

Stock #

R3409 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

44238623-44291703 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 44284207 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Valine at position 60 (M60V)

Ref Sequence

ENSEMBL: ENSMUSP00000154478 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000038719] [ENSMUST00000226606] [ENSMUST00000227843]

AlphaFold

Q6PIP5

Predicted Effect

probably benign
Transcript: ENSMUST00000038719
AA Change: M60V

PolyPhen 2 Score 0.133 (Sensitivity: 0.92; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000042746
Gene: ENSMUSG00000038736
AA Change: M60V

Domain	Start	End	E-Value	Type
Pfam:CS	275	349	1.4e-18	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000226606

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000226660

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000227645

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000227789

Predicted Effect

probably benign
Transcript: ENSMUST00000227843
AA Change: M60V

PolyPhen 2 Score 0.175 (Sensitivity: 0.92; Specificity: 0.87)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000228319

Meta Mutation Damage Score

0.3203

Coding Region Coverage

1x: 99.0%
3x: 98.3%
10x: 96.4%
20x: 91.4%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 45 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adgra3	A	G	5: 50,159,272 (GRCm39)	V326A	probably damaging	Het
AI429214	C	T	8: 37,461,071 (GRCm39)	S73L	probably benign	Het
Atp13a4	G	T	16: 29,232,567 (GRCm39)	T923K	probably damaging	Het
Ccdc150	A	G	1: 54,395,932 (GRCm39)	D805G	probably benign	Het
Ccdc185	T	G	1: 182,576,313 (GRCm39)	Q125H	possibly damaging	Het
Ccdc88a	T	A	11: 29,436,006 (GRCm39)	C10S	probably damaging	Het
Cpsf1	G	T	15: 76,485,981 (GRCm39)	Y396*	probably null	Het
Dnpep	A	G	1: 75,293,270 (GRCm39)	V33A	probably damaging	Het
Fbn1	G	A	2: 125,254,585 (GRCm39)	A226V	possibly damaging	Het
Frmd4a	A	T	2: 4,157,839 (GRCm39)		probably benign	Het
Gipr	A	G	7: 18,893,719 (GRCm39)	V318A	possibly damaging	Het
Gsdmc4	A	G	15: 63,763,895 (GRCm39)	S401P	probably benign	Het
H2-M10.6	T	A	17: 37,124,893 (GRCm39)	V270E	probably damaging	Het
Klhl7	G	T	5: 24,343,319 (GRCm39)	V212L	probably damaging	Het
Krt10	C	A	11: 99,278,087 (GRCm39)	R322L	probably damaging	Het
Lrrn4	A	G	2: 132,721,781 (GRCm39)	L12P	unknown	Het
Mast2	C	G	4: 116,168,107 (GRCm39)	E881Q	possibly damaging	Het
Nod1	G	T	6: 54,921,902 (GRCm39)	R139S	probably benign	Het
Notch3	C	T	17: 32,369,676 (GRCm39)	V772M	possibly damaging	Het
Nrxn1	G	A	17: 90,515,795 (GRCm39)	T19M	probably damaging	Het
Or10g1	T	A	14: 52,647,818 (GRCm39)	R170S	possibly damaging	Het
Or4c1	A	G	2: 89,133,717 (GRCm39)	F73S	probably benign	Het
Or4c115	T	C	2: 88,927,668 (GRCm39)	N201S	possibly damaging	Het
Or5b101	G	C	19: 13,005,411 (GRCm39)	A94G	probably benign	Het
Or5w8	T	A	2: 87,688,005 (GRCm39)	L162*	probably null	Het
Or8c9	T	A	9: 38,241,640 (GRCm39)	S252R	possibly damaging	Het
Pcdhb6	A	G	18: 37,468,945 (GRCm39)	E622G	probably damaging	Het
Pitrm1	G	A	13: 6,628,517 (GRCm39)	A937T	possibly damaging	Het
Plxnb1	G	A	9: 108,935,681 (GRCm39)		probably null	Het
Ripk3	T	G	14: 56,025,698 (GRCm39)	N54T	probably damaging	Het
Rpn2	C	A	2: 157,132,572 (GRCm39)	A108E	possibly damaging	Het
Scaf11	A	G	15: 96,312,745 (GRCm39)	V1432A	probably damaging	Het
Sec14l5	C	T	16: 4,983,518 (GRCm39)		probably null	Het
Serpina3n	A	G	12: 104,377,536 (GRCm39)	E263G	possibly damaging	Het
Six4	A	G	12: 73,159,657 (GRCm39)	F101S	probably damaging	Het
Slc12a1	A	G	2: 124,996,071 (GRCm39)	T75A	probably benign	Het
Slc26a9	T	C	1: 131,691,682 (GRCm39)	S642P	probably benign	Het
Smu1	T	C	4: 40,752,008 (GRCm39)	T183A	probably benign	Het
Sptb	T	G	12: 76,657,589 (GRCm39)	K1311Q	possibly damaging	Het
Tal2	A	G	4: 53,785,843 (GRCm39)	N8S	probably damaging	Het
Tenm4	A	G	7: 96,544,367 (GRCm39)	T2128A	probably damaging	Het
Tmem67	A	T	4: 12,073,952 (GRCm39)	M288K	probably benign	Het
Ubr1	A	C	2: 120,793,929 (GRCm39)	I85S	probably benign	Het
Vmn2r90	G	T	17: 17,953,638 (GRCm39)	V601L	probably benign	Het
Zfhx4	C	T	3: 5,468,418 (GRCm39)	P2859S	probably benign	Het

Other mutations in Nudcd1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01024:Nudcd1	APN	15	44,284,222 (GRCm39)	missense	probably benign	0.03
IGL01956:Nudcd1	APN	15	44,263,612 (GRCm39)	missense	probably damaging	1.00
IGL01996:Nudcd1	APN	15	44,269,357 (GRCm39)	missense	probably benign	0.41
R0333:Nudcd1	UTSW	15	44,264,683 (GRCm39)	missense	probably benign
R0960:Nudcd1	UTSW	15	44,291,047 (GRCm39)	unclassified	probably benign
R3410:Nudcd1	UTSW	15	44,284,207 (GRCm39)	missense	probably benign	0.17
R4771:Nudcd1	UTSW	15	44,268,878 (GRCm39)	missense	probably damaging	0.98
R4970:Nudcd1	UTSW	15	44,240,039 (GRCm39)	nonsense	probably null
R5112:Nudcd1	UTSW	15	44,240,039 (GRCm39)	nonsense	probably null
R5789:Nudcd1	UTSW	15	44,251,879 (GRCm39)	nonsense	probably null
R6353:Nudcd1	UTSW	15	44,284,158 (GRCm39)	missense	probably damaging	1.00
R7045:Nudcd1	UTSW	15	44,269,226 (GRCm39)	missense	probably benign	0.00
R7483:Nudcd1	UTSW	15	44,269,253 (GRCm39)	missense	possibly damaging	0.89
R7742:Nudcd1	UTSW	15	44,268,754 (GRCm39)	missense	probably benign	0.06
R8949:Nudcd1	UTSW	15	44,251,971 (GRCm39)	missense	probably benign	0.00
R9066:Nudcd1	UTSW	15	44,243,588 (GRCm39)	missense	probably damaging	1.00
R9201:Nudcd1	UTSW	15	44,263,473 (GRCm39)	missense	probably benign	0.00
R9438:Nudcd1	UTSW	15	44,269,321 (GRCm39)	missense	probably benign	0.15
Z1177:Nudcd1	UTSW	15	44,268,828 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- ATGTGCACCTTGACTGTCTGG -3'
(R):5'- GCCTGTTGTAGCCTCTGTAG -3'

Sequencing Primer
(F):5'- ACCTTGACTGTCTGGACATCAG -3'
(R):5'- GTAGCCTCTGTAGCTGGCATTAAC -3'

Posted On

2015-01-23