Incidental Mutation 'R3720:Pramel12'
ID |
258851 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Pramel12
|
Ensembl Gene |
ENSMUSG00000046862 |
Gene Name |
PRAME like 12 |
Synonyms |
Pramef8, 4732496O08Rik |
MMRRC Submission |
040711-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.061)
|
Stock # |
R3720 (G1)
|
Quality Score |
225 |
Status
|
Validated
|
Chromosome |
4 |
Chromosomal Location |
143138996-143147661 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to G
at 143145949 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Threonine to Alanine
at position 473
(T473A)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000058676
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000037356]
[ENSMUST00000059790]
[ENSMUST00000132915]
[ENSMUST00000155157]
|
AlphaFold |
Q8CE24 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000037356
AA Change: T473A
PolyPhen 2
Score 0.099 (Sensitivity: 0.93; Specificity: 0.85)
|
SMART Domains |
Protein: ENSMUSP00000041323 Gene: ENSMUSG00000046862 AA Change: T473A
Domain | Start | End | E-Value | Type |
SCOP:d1a4ya_
|
205 |
410 |
3e-12 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000059790
AA Change: T473A
PolyPhen 2
Score 0.099 (Sensitivity: 0.93; Specificity: 0.85)
|
SMART Domains |
Protein: ENSMUSP00000058676 Gene: ENSMUSG00000046862 AA Change: T473A
Domain | Start | End | E-Value | Type |
SCOP:d1a4ya_
|
205 |
410 |
3e-12 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000132915
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000155157
|
Meta Mutation Damage Score |
0.0898 |
Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.4%
- 10x: 97.0%
- 20x: 94.0%
|
Validation Efficiency |
93% (40/43) |
Allele List at MGI |
|
Other mutations in this stock |
Total: 41 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Appl1 |
G |
A |
14: 26,649,801 (GRCm39) |
T575M |
probably damaging |
Het |
Atp2c1 |
A |
T |
9: 105,300,175 (GRCm39) |
M708K |
probably damaging |
Het |
C9 |
A |
G |
15: 6,512,600 (GRCm39) |
T241A |
possibly damaging |
Het |
Ccrl2 |
T |
C |
9: 110,885,432 (GRCm39) |
D22G |
probably benign |
Het |
Cd47 |
A |
G |
16: 49,688,205 (GRCm39) |
I42V |
probably benign |
Het |
Cntnap5c |
T |
C |
17: 58,637,197 (GRCm39) |
S1025P |
probably benign |
Het |
Col8a1 |
T |
C |
16: 57,447,279 (GRCm39) |
M744V |
unknown |
Het |
Cstf3 |
A |
G |
2: 104,483,431 (GRCm39) |
|
probably benign |
Het |
Dnah8 |
G |
A |
17: 31,073,872 (GRCm39) |
R4514H |
probably damaging |
Het |
Dnai1 |
G |
A |
4: 41,602,615 (GRCm39) |
R113H |
probably damaging |
Het |
Fry |
T |
C |
5: 150,378,037 (GRCm39) |
S410P |
probably damaging |
Het |
Glt6d1 |
ACCC |
ACCCC |
2: 25,685,179 (GRCm39) |
|
probably null |
Het |
Gm10717 |
A |
G |
9: 3,025,532 (GRCm39) |
Y39C |
probably benign |
Het |
Hivep1 |
C |
T |
13: 42,312,077 (GRCm39) |
T1439I |
probably benign |
Het |
Iqgap2 |
T |
C |
13: 95,805,036 (GRCm39) |
|
probably null |
Het |
Kbtbd11 |
T |
A |
8: 15,079,118 (GRCm39) |
C572* |
probably null |
Het |
Kif1c |
T |
C |
11: 70,594,597 (GRCm39) |
F86L |
possibly damaging |
Het |
Kirrel1 |
C |
T |
3: 86,996,458 (GRCm39) |
M380I |
probably null |
Het |
Ldb1 |
C |
T |
19: 46,033,331 (GRCm39) |
|
probably benign |
Het |
Lrmda |
T |
A |
14: 22,077,399 (GRCm39) |
|
probably benign |
Het |
Med23 |
T |
C |
10: 24,767,018 (GRCm39) |
L369S |
probably damaging |
Het |
Mei1 |
A |
G |
15: 81,987,405 (GRCm39) |
H399R |
possibly damaging |
Het |
Myo1b |
G |
T |
1: 51,815,505 (GRCm39) |
H614N |
possibly damaging |
Het |
Neurl1b |
C |
T |
17: 26,633,949 (GRCm39) |
T4M |
probably damaging |
Het |
Or10al7 |
T |
C |
17: 38,366,259 (GRCm39) |
Y66C |
probably damaging |
Het |
Or5t15 |
T |
C |
2: 86,681,935 (GRCm39) |
T36A |
probably benign |
Het |
Polg |
G |
A |
7: 79,106,539 (GRCm39) |
Q163* |
probably null |
Het |
Sdk2 |
G |
A |
11: 113,691,070 (GRCm39) |
P1835L |
probably damaging |
Het |
Slc35a5 |
A |
T |
16: 44,967,685 (GRCm39) |
I138N |
probably damaging |
Het |
Snx31 |
T |
C |
15: 36,523,704 (GRCm39) |
|
probably null |
Het |
Speg |
A |
T |
1: 75,403,426 (GRCm39) |
H2590L |
probably damaging |
Het |
Spink4 |
T |
A |
4: 40,929,136 (GRCm39) |
C54S |
probably damaging |
Het |
Swap70 |
A |
G |
7: 109,869,254 (GRCm39) |
E349G |
probably damaging |
Het |
Sybu |
A |
G |
15: 44,536,028 (GRCm39) |
V766A |
possibly damaging |
Het |
Tns3 |
G |
A |
11: 8,442,999 (GRCm39) |
R455W |
probably damaging |
Het |
Tnxb |
T |
A |
17: 34,931,938 (GRCm39) |
V2157E |
possibly damaging |
Het |
Trak2 |
A |
T |
1: 58,985,404 (GRCm39) |
|
probably null |
Het |
Trav18 |
C |
T |
14: 54,069,074 (GRCm39) |
R39C |
possibly damaging |
Het |
Uroc1 |
G |
A |
6: 90,323,337 (GRCm39) |
V352M |
probably damaging |
Het |
Zfp106 |
A |
C |
2: 120,365,080 (GRCm39) |
I442M |
probably benign |
Het |
Zfp935 |
G |
A |
13: 62,602,846 (GRCm39) |
Q98* |
probably null |
Het |
|
Other mutations in Pramel12 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00324:Pramel12
|
APN |
4 |
143,143,237 (GRCm39) |
start codon destroyed |
probably null |
1.00 |
IGL01483:Pramel12
|
APN |
4 |
143,144,047 (GRCm39) |
missense |
probably damaging |
0.99 |
IGL01800:Pramel12
|
APN |
4 |
143,145,650 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02063:Pramel12
|
APN |
4 |
143,144,421 (GRCm39) |
missense |
probably benign |
0.00 |
IGL02216:Pramel12
|
APN |
4 |
143,144,298 (GRCm39) |
splice site |
probably null |
|
IGL02236:Pramel12
|
APN |
4 |
143,143,512 (GRCm39) |
missense |
probably benign |
0.07 |
IGL03013:Pramel12
|
APN |
4 |
143,144,037 (GRCm39) |
missense |
possibly damaging |
0.64 |
R0658:Pramel12
|
UTSW |
4 |
143,144,170 (GRCm39) |
missense |
probably damaging |
1.00 |
R1485:Pramel12
|
UTSW |
4 |
143,144,188 (GRCm39) |
missense |
probably benign |
0.01 |
R2049:Pramel12
|
UTSW |
4 |
143,143,441 (GRCm39) |
missense |
probably damaging |
1.00 |
R2518:Pramel12
|
UTSW |
4 |
143,144,473 (GRCm39) |
missense |
possibly damaging |
0.89 |
R3738:Pramel12
|
UTSW |
4 |
143,143,212 (GRCm39) |
utr 5 prime |
probably benign |
|
R3961:Pramel12
|
UTSW |
4 |
143,145,888 (GRCm39) |
missense |
probably benign |
0.00 |
R4583:Pramel12
|
UTSW |
4 |
143,143,324 (GRCm39) |
missense |
probably damaging |
1.00 |
R5135:Pramel12
|
UTSW |
4 |
143,145,579 (GRCm39) |
missense |
probably benign |
0.01 |
R5348:Pramel12
|
UTSW |
4 |
143,143,351 (GRCm39) |
missense |
probably damaging |
1.00 |
R5473:Pramel12
|
UTSW |
4 |
143,145,874 (GRCm39) |
missense |
probably damaging |
1.00 |
R5977:Pramel12
|
UTSW |
4 |
143,144,229 (GRCm39) |
missense |
probably benign |
0.02 |
R6909:Pramel12
|
UTSW |
4 |
143,144,479 (GRCm39) |
missense |
probably damaging |
1.00 |
R7441:Pramel12
|
UTSW |
4 |
143,145,410 (GRCm39) |
missense |
probably benign |
0.00 |
R7777:Pramel12
|
UTSW |
4 |
143,144,331 (GRCm39) |
missense |
possibly damaging |
0.88 |
R8053:Pramel12
|
UTSW |
4 |
143,144,208 (GRCm39) |
missense |
probably benign |
0.01 |
R8218:Pramel12
|
UTSW |
4 |
143,145,706 (GRCm39) |
missense |
probably benign |
0.01 |
R8345:Pramel12
|
UTSW |
4 |
143,143,438 (GRCm39) |
missense |
probably benign |
0.18 |
R8963:Pramel12
|
UTSW |
4 |
143,144,229 (GRCm39) |
missense |
probably benign |
0.02 |
R9047:Pramel12
|
UTSW |
4 |
143,145,673 (GRCm39) |
missense |
possibly damaging |
0.93 |
R9395:Pramel12
|
UTSW |
4 |
143,145,605 (GRCm39) |
missense |
probably benign |
0.23 |
R9570:Pramel12
|
UTSW |
4 |
143,144,514 (GRCm39) |
missense |
probably benign |
0.02 |
|
Predicted Primers |
PCR Primer
(F):5'- ATCACACAGCCAGTCTGAGC -3'
(R):5'- CCCATTGTTCTCTAGAAGCTCAGTC -3'
Sequencing Primer
(F):5'- AGCTGACCCAGGAGCTGTATC -3'
(R):5'- AGAAGCTCAGTCTTTGTGGTCTAACC -3'
|
Posted On |
2015-01-23 |