Mutagenetix > Incidental Mutation

Incidental Mutation 'R3405:Gsdma'

259338

Institutional Source

Beutler Lab

Gene Symbol

Gsdma

Ensembl Gene

ENSMUSG00000017204

Gene Name

gasdermin A

Synonyms

Gsdm1, H312E, Gsdm, Gsdma1

MMRRC Submission

040623-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.052) question?

Stock #

R3405 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

98555177-98568534 bp(+) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

T to C at 98563964 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000017348 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000017348]

AlphaFold

Q9EST1

Predicted Effect

probably benign
Transcript: ENSMUST00000017348

SMART Domains

Protein: ENSMUSP00000017348
Gene: ENSMUSG00000017204

Domain	Start	End	E-Value	Type
Pfam:Gasdermin	3	421	2.2e-147	PFAM
low complexity region	429	443	N/A	INTRINSIC

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.9%
20x: 93.4%

Validation Efficiency

100% (53/53)

Allele List at MGI

Other mutations in this stock

Total: 46 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Alms1	C	A	6: 85,644,945 (GRCm39)		probably benign	Het
Bcorl1	T	A	X: 47,459,884 (GRCm39)	M1139K	probably benign	Het
C2cd3	T	C	7: 100,039,373 (GRCm39)	S191P	probably benign	Het
Cdc27	T	C	11: 104,398,026 (GRCm39)	E778G	probably damaging	Het
Col3a1	G	A	1: 45,377,913 (GRCm39)		probably benign	Het
Cubn	C	T	2: 13,338,319 (GRCm39)	V2350I	probably benign	Het
Dhodh	G	A	8: 110,330,107 (GRCm39)	R86*	probably null	Het
Dnhd1	C	T	7: 105,343,968 (GRCm39)	Q1771*	probably null	Het
Dpt	A	C	1: 164,624,500 (GRCm39)	E67A	probably damaging	Het
Eif2ak2	A	G	17: 79,166,068 (GRCm39)		probably benign	Het
Exo1	A	G	1: 175,733,536 (GRCm39)	K787E	possibly damaging	Het
Fancm	T	C	12: 65,122,546 (GRCm39)	S23P	probably benign	Het
Fmn1	A	G	2: 113,194,693 (GRCm39)	E131G	unknown	Het
Gm5612	A	T	9: 18,339,149 (GRCm39)		probably benign	Het
Hormad2	T	G	11: 4,374,302 (GRCm39)	Q88P	probably damaging	Het
Immp2l	T	A	12: 41,160,846 (GRCm39)	L48*	probably null	Het
Kcne4	C	T	1: 78,795,688 (GRCm39)	A112V	possibly damaging	Het
Lamb1	C	T	12: 31,337,528 (GRCm39)	R372C	probably damaging	Het
Lrrc30	A	G	17: 67,939,175 (GRCm39)	L135P	probably damaging	Het
Ltn1	A	T	16: 87,213,103 (GRCm39)	V486D	probably damaging	Het
Mab21l3	C	A	3: 101,730,847 (GRCm39)	V131F	probably damaging	Het
Map3k4	A	T	17: 12,475,668 (GRCm39)	F809Y	probably damaging	Het
Mki67	T	A	7: 135,309,204 (GRCm39)	T416S	probably benign	Het
Mlst8	A	T	17: 24,697,099 (GRCm39)	M56K	probably benign	Het
Mmp9	A	G	2: 164,791,310 (GRCm39)	Y160C	probably damaging	Het
Mslnl	A	G	17: 25,965,155 (GRCm39)	Y507C	probably damaging	Het
Myl12a	A	T	17: 71,301,737 (GRCm39)	M130K	probably benign	Het
Myrfl	A	G	10: 116,658,770 (GRCm39)	F396L	probably damaging	Het
Nalf2	A	G	X: 98,889,109 (GRCm39)	I325V	probably benign	Het
Ncf2	A	G	1: 152,701,698 (GRCm39)		probably benign	Het
Nlrp9c	T	A	7: 26,084,707 (GRCm39)	I291F	probably benign	Het
Nrp1	T	A	8: 129,224,569 (GRCm39)	Y777*	probably null	Het
Ogdh	T	C	11: 6,299,462 (GRCm39)	V776A	probably damaging	Het
Pcdh17	T	A	14: 84,684,062 (GRCm39)	D176E	probably damaging	Het
Plg	G	T	17: 12,622,096 (GRCm39)	S472I	possibly damaging	Het
Pnlip	A	G	19: 58,669,191 (GRCm39)	T397A	probably benign	Het
Rbfox3	T	A	11: 118,387,283 (GRCm39)	Q277L	possibly damaging	Het
Senp7	T	A	16: 56,008,640 (GRCm39)	W1007R	probably damaging	Het
Stap2	A	T	17: 56,304,511 (GRCm39)	W374R	probably benign	Het
Szt2	A	G	4: 118,251,217 (GRCm39)	V297A	probably benign	Het
Thada	A	T	17: 84,538,213 (GRCm39)		probably benign	Het
Ticrr	G	C	7: 79,344,539 (GRCm39)	S1468T	probably benign	Het
Uvssa	G	T	5: 33,547,162 (GRCm39)	G243C	probably damaging	Het
Vmn2r129	G	T	4: 156,686,692 (GRCm39)		noncoding transcript	Het
Vwa8	T	A	14: 79,401,660 (GRCm39)		probably benign	Het
Zfp609	A	T	9: 65,608,454 (GRCm39)	M1142K	possibly damaging	Het

Other mutations in Gsdma

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01650:Gsdma	APN	11	98,564,513 (GRCm39)	missense	probably damaging	0.98
IGL02573:Gsdma	APN	11	98,561,577 (GRCm39)	splice site	probably benign
IGL03005:Gsdma	APN	11	98,567,085 (GRCm39)	missense	probably damaging	0.97
R0143:Gsdma	UTSW	11	98,557,080 (GRCm39)	missense	probably damaging	0.96
R1337:Gsdma	UTSW	11	98,560,533 (GRCm39)	nonsense	probably null
R1533:Gsdma	UTSW	11	98,567,210 (GRCm39)	missense	unknown
R1605:Gsdma	UTSW	11	98,557,319 (GRCm39)	missense	probably damaging	0.98
R1929:Gsdma	UTSW	11	98,562,193 (GRCm39)	critical splice donor site	probably null
R1998:Gsdma	UTSW	11	98,564,520 (GRCm39)	missense	probably damaging	0.99
R2043:Gsdma	UTSW	11	98,557,046 (GRCm39)	missense	possibly damaging	0.94
R2114:Gsdma	UTSW	11	98,563,838 (GRCm39)	missense	probably damaging	1.00
R3404:Gsdma	UTSW	11	98,563,964 (GRCm39)	splice site	probably benign
R3406:Gsdma	UTSW	11	98,563,964 (GRCm39)	splice site	probably benign
R3711:Gsdma	UTSW	11	98,557,045 (GRCm39)	nonsense	probably null
R3764:Gsdma	UTSW	11	98,561,593 (GRCm39)	missense	probably damaging	0.98
R4656:Gsdma	UTSW	11	98,563,907 (GRCm39)	missense	probably damaging	1.00
R5384:Gsdma	UTSW	11	98,557,275 (GRCm39)	critical splice acceptor site	probably null
R5943:Gsdma	UTSW	11	98,563,852 (GRCm39)	missense	probably benign	0.30
R7620:Gsdma	UTSW	11	98,557,429 (GRCm39)	missense	probably benign	0.06
R8340:Gsdma	UTSW	11	98,557,421 (GRCm39)	missense	probably benign	0.07
R9349:Gsdma	UTSW	11	98,566,771 (GRCm39)	missense	probably benign	0.36
R9736:Gsdma	UTSW	11	98,567,169 (GRCm39)	missense	probably damaging	1.00
X0017:Gsdma	UTSW	11	98,557,096 (GRCm39)	critical splice donor site	probably benign
Z1176:Gsdma	UTSW	11	98,560,585 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ATCAGCTGAAAGGGTGCCAG -3'
(R):5'- CTGTACTGATGCTCTTCTTTCAGGG -3'

Sequencing Primer
(F):5'- ATTAACTGTGCCCCTAGG -3'
(R):5'- GCTCTTCTTTCAGGGATAAAAGG -3'

Posted On

2015-01-23