Incidental Mutation 'R2873:Nomo1'
ID 260411
Institutional Source Beutler Lab
Gene Symbol Nomo1
Ensembl Gene ENSMUSG00000030835
Gene Name nodal modulator 1
Synonyms D7Ertd156e, Nomo, PM5
MMRRC Submission 040461-MU
Accession Numbers
Essential gene? Possibly essential (E-score: 0.672) question?
Stock # R2873 (G1)
Quality Score 225
Status Validated
Chromosome 7
Chromosomal Location 45683122-45733636 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to A at 45696361 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Asparagine at position 293 (T293N)
Ref Sequence ENSEMBL: ENSMUSP00000033121 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000033121]
AlphaFold Q6GQT9
Predicted Effect probably damaging
Transcript: ENSMUST00000033121
AA Change: T293N

PolyPhen 2 Score 0.961 (Sensitivity: 0.78; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000033121
Gene: ENSMUSG00000030835
AA Change: T293N

DomainStartEndE-ValueType
low complexity region 2 21 N/A INTRINSIC
internal_repeat_1 22 215 2.35e-7 PROSPERO
Pfam:CarboxypepD_reg 322 395 3.5e-12 PFAM
Pfam:DUF2012 331 401 5.7e-10 PFAM
low complexity region 709 732 N/A INTRINSIC
low complexity region 881 893 N/A INTRINSIC
Blast:FN3 913 1017 6e-22 BLAST
low complexity region 1156 1164 N/A INTRINSIC
low complexity region 1203 1214 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000182564
Meta Mutation Damage Score 0.3060 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.3%
  • 20x: 95.2%
Validation Efficiency 100% (81/81)
Allele List at MGI

All alleles(8) : Gene trapped(8)

Other mutations in this stock
Total: 73 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca8b A G 11: 109,846,002 (GRCm39) C811R possibly damaging Het
Acvr1 G A 2: 58,367,808 (GRCm39) Q118* probably null Het
Als2 A G 1: 59,250,296 (GRCm39) S483P probably damaging Het
Ankrd40 T C 11: 94,224,771 (GRCm39) V60A possibly damaging Het
Armc2 C T 10: 41,842,696 (GRCm39) probably null Het
Atp12a A G 14: 56,624,407 (GRCm39) R952G possibly damaging Het
Atp13a2 T C 4: 140,730,294 (GRCm39) I773T probably benign Het
Atp6v1g1 A G 4: 63,468,258 (GRCm39) Y87C probably benign Het
Ccdc162 G T 10: 41,531,095 (GRCm39) T537N possibly damaging Het
Ccdc59 A T 10: 105,677,388 (GRCm39) K9M possibly damaging Het
Cd101 A T 3: 100,911,164 (GRCm39) D831E probably benign Het
Ch25h T A 19: 34,452,210 (GRCm39) H106L probably benign Het
Chek2 C A 5: 111,011,202 (GRCm39) Y333* probably null Het
Cimap1d G A 10: 79,481,487 (GRCm39) T14I probably benign Het
Csmd2 T C 4: 128,451,511 (GRCm39) F113S unknown Het
Cyp4a14 C A 4: 115,344,498 (GRCm39) G456W probably damaging Het
Cyp4a30b A G 4: 115,315,559 (GRCm39) H260R possibly damaging Het
Dennd2b A T 7: 109,156,637 (GRCm39) Y38N probably benign Het
Eif4enif1 C T 11: 3,192,586 (GRCm39) P805S probably damaging Het
Fan1 A G 7: 64,012,938 (GRCm39) I668T probably benign Het
Flnc A G 6: 29,447,542 (GRCm39) D1115G probably damaging Het
Ftdc1 A T 16: 58,434,342 (GRCm39) I125K probably benign Het
Gbp11 C T 5: 105,478,866 (GRCm39) D191N probably benign Het
Gm5519 A C 19: 33,802,410 (GRCm39) D151A possibly damaging Het
Grid2ip C A 5: 143,343,684 (GRCm39) Q127K probably benign Het
Hdhd2 T C 18: 77,042,702 (GRCm39) F44L probably damaging Het
Hmcn1 A T 1: 150,614,467 (GRCm39) V1313D possibly damaging Het
Kpna7 T C 5: 144,930,745 (GRCm39) T367A probably benign Het
Matr3 T A 18: 35,705,349 (GRCm39) S91R probably benign Het
Mdm1 A G 10: 117,986,847 (GRCm39) T267A probably benign Het
Mlxip A G 5: 123,590,730 (GRCm39) M878V probably benign Het
Mtor T A 4: 148,624,487 (GRCm39) M2089K probably benign Het
Myo9b G A 8: 71,786,981 (GRCm39) R721Q probably benign Het
Ndufs1 A G 1: 63,203,882 (GRCm39) probably benign Het
Nlrp4b C T 7: 10,444,170 (GRCm39) Q40* probably null Het
Notch1 A G 2: 26,350,247 (GRCm39) C2298R possibly damaging Het
Notum A G 11: 120,551,022 (GRCm39) V48A probably benign Het
Or10g1 T G 14: 52,648,318 (GRCm39) T4P probably benign Het
Or10z1 T C 1: 174,078,092 (GRCm39) S134G probably benign Het
Or6c211 A T 10: 129,505,628 (GRCm39) C253* probably null Het
Ostc T C 3: 130,497,157 (GRCm39) N80S probably damaging Het
Palmd T C 3: 116,717,400 (GRCm39) R366G possibly damaging Het
Parp1 A G 1: 180,401,230 (GRCm39) D45G probably damaging Het
Pcdhga9 T A 18: 37,870,524 (GRCm39) Y118N possibly damaging Het
Pes1 C A 11: 3,926,834 (GRCm39) T372K probably benign Het
Plcl1 A T 1: 55,736,309 (GRCm39) D550V probably benign Het
Plekhg5 T A 4: 152,191,960 (GRCm39) C433S probably benign Het
Plin2 A G 4: 86,586,915 (GRCm39) M1T probably null Het
Pms2 G A 5: 143,848,732 (GRCm39) probably benign Het
Ppp1r7 T A 1: 93,285,585 (GRCm39) probably null Het
Psmb8 T C 17: 34,419,144 (GRCm39) I146T probably damaging Het
Ptger4 T C 15: 5,264,286 (GRCm39) R457G probably benign Het
Pzp A T 6: 128,462,519 (GRCm39) probably null Het
Ralgds A G 2: 28,438,781 (GRCm39) probably null Het
Rnf6 T C 5: 146,147,215 (GRCm39) Y601C probably benign Het
Sgk2 A G 2: 162,836,449 (GRCm39) probably benign Het
Shoc1 A C 4: 59,093,850 (GRCm39) L226R probably damaging Het
Slc39a8 T A 3: 135,592,554 (GRCm39) probably null Het
Slc4a4 G T 5: 89,283,623 (GRCm39) V481L probably damaging Het
Slc5a8 A G 10: 88,740,825 (GRCm39) I247V probably benign Het
Slit3 G T 11: 35,435,620 (GRCm39) E184* probably null Het
Sppl2c C T 11: 104,078,141 (GRCm39) P314S probably benign Het
St7 C T 6: 17,819,276 (GRCm39) P60L probably damaging Het
Tafa2 A T 10: 123,540,270 (GRCm39) H42L possibly damaging Het
Tbc1d8 A G 1: 39,444,398 (GRCm39) F187S probably damaging Het
Tet2 C T 3: 133,192,715 (GRCm39) G573E probably damaging Het
Tnni3k C T 3: 154,644,387 (GRCm39) probably null Het
Trpa1 A G 1: 14,957,844 (GRCm39) C705R probably damaging Het
Usp9y T A Y: 1,310,502 (GRCm39) probably benign Het
Vmn2r68 A C 7: 84,882,834 (GRCm39) M306R probably benign Het
Vwa7 G A 17: 35,240,218 (GRCm39) M395I probably damaging Het
Ybx3 G A 6: 131,347,376 (GRCm39) A253V probably damaging Het
Zfp53 A T 17: 21,728,340 (GRCm39) E124D probably benign Het
Other mutations in Nomo1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00331:Nomo1 APN 7 45,694,760 (GRCm39) missense possibly damaging 0.66
IGL00811:Nomo1 APN 7 45,732,732 (GRCm39) missense possibly damaging 0.95
IGL01710:Nomo1 APN 7 45,687,980 (GRCm39) missense probably damaging 1.00
IGL01797:Nomo1 APN 7 45,706,086 (GRCm39) missense probably damaging 0.96
IGL01973:Nomo1 APN 7 45,732,651 (GRCm39) splice site probably benign
IGL02506:Nomo1 APN 7 45,727,480 (GRCm39) missense possibly damaging 0.50
IGL02739:Nomo1 APN 7 45,693,731 (GRCm39) splice site probably null
IGL02863:Nomo1 APN 7 45,696,340 (GRCm39) missense probably damaging 0.98
P0005:Nomo1 UTSW 7 45,686,981 (GRCm39) critical splice acceptor site probably null
PIT4243001:Nomo1 UTSW 7 45,693,705 (GRCm39) missense probably damaging 1.00
R0106:Nomo1 UTSW 7 45,687,056 (GRCm39) missense probably damaging 1.00
R0106:Nomo1 UTSW 7 45,687,056 (GRCm39) missense probably damaging 1.00
R0124:Nomo1 UTSW 7 45,732,652 (GRCm39) splice site probably benign
R0239:Nomo1 UTSW 7 45,729,018 (GRCm39) critical splice donor site probably null
R0239:Nomo1 UTSW 7 45,729,018 (GRCm39) critical splice donor site probably null
R0417:Nomo1 UTSW 7 45,718,122 (GRCm39) missense possibly damaging 0.51
R0467:Nomo1 UTSW 7 45,721,911 (GRCm39) splice site probably null
R0535:Nomo1 UTSW 7 45,721,941 (GRCm39) missense probably damaging 0.99
R0829:Nomo1 UTSW 7 45,725,596 (GRCm39) splice site probably benign
R0940:Nomo1 UTSW 7 45,683,329 (GRCm39) missense possibly damaging 0.56
R1480:Nomo1 UTSW 7 45,710,337 (GRCm39) missense probably damaging 0.98
R1601:Nomo1 UTSW 7 45,696,379 (GRCm39) missense probably damaging 0.96
R1743:Nomo1 UTSW 7 45,719,461 (GRCm39) critical splice donor site probably null
R1765:Nomo1 UTSW 7 45,715,717 (GRCm39) missense possibly damaging 0.59
R1861:Nomo1 UTSW 7 45,727,525 (GRCm39) missense probably benign 0.06
R1998:Nomo1 UTSW 7 45,683,368 (GRCm39) missense possibly damaging 0.69
R1999:Nomo1 UTSW 7 45,706,151 (GRCm39) missense possibly damaging 0.95
R2145:Nomo1 UTSW 7 45,715,928 (GRCm39) missense probably damaging 1.00
R2869:Nomo1 UTSW 7 45,696,361 (GRCm39) missense probably damaging 0.96
R2869:Nomo1 UTSW 7 45,696,361 (GRCm39) missense probably damaging 0.96
R2870:Nomo1 UTSW 7 45,696,361 (GRCm39) missense probably damaging 0.96
R2870:Nomo1 UTSW 7 45,696,361 (GRCm39) missense probably damaging 0.96
R2871:Nomo1 UTSW 7 45,696,361 (GRCm39) missense probably damaging 0.96
R2871:Nomo1 UTSW 7 45,696,361 (GRCm39) missense probably damaging 0.96
R4116:Nomo1 UTSW 7 45,683,320 (GRCm39) missense probably benign 0.06
R4404:Nomo1 UTSW 7 45,706,092 (GRCm39) missense probably benign 0.00
R4406:Nomo1 UTSW 7 45,706,092 (GRCm39) missense probably benign 0.00
R4560:Nomo1 UTSW 7 45,690,904 (GRCm39) missense probably damaging 0.99
R4633:Nomo1 UTSW 7 45,699,684 (GRCm39) splice site probably benign
R4651:Nomo1 UTSW 7 45,717,866 (GRCm39) missense probably damaging 0.99
R4653:Nomo1 UTSW 7 45,711,237 (GRCm39) missense probably benign 0.01
R4752:Nomo1 UTSW 7 45,706,626 (GRCm39) missense probably damaging 1.00
R4792:Nomo1 UTSW 7 45,693,643 (GRCm39) splice site probably null
R4838:Nomo1 UTSW 7 45,733,139 (GRCm39) missense unknown
R4876:Nomo1 UTSW 7 45,715,915 (GRCm39) missense probably damaging 1.00
R4915:Nomo1 UTSW 7 45,693,656 (GRCm39) missense probably benign 0.30
R4953:Nomo1 UTSW 7 45,700,155 (GRCm39) intron probably benign
R5463:Nomo1 UTSW 7 45,712,426 (GRCm39) missense possibly damaging 0.47
R5664:Nomo1 UTSW 7 45,725,581 (GRCm39) missense probably benign
R5956:Nomo1 UTSW 7 45,692,037 (GRCm39) missense possibly damaging 0.51
R6037:Nomo1 UTSW 7 45,712,423 (GRCm39) missense possibly damaging 0.64
R6037:Nomo1 UTSW 7 45,712,423 (GRCm39) missense possibly damaging 0.64
R6307:Nomo1 UTSW 7 45,683,260 (GRCm39) unclassified probably benign
R6695:Nomo1 UTSW 7 45,715,885 (GRCm39) missense probably benign 0.16
R6970:Nomo1 UTSW 7 45,695,391 (GRCm39) missense probably damaging 0.97
R7334:Nomo1 UTSW 7 45,732,692 (GRCm39) missense probably damaging 1.00
R7394:Nomo1 UTSW 7 45,715,903 (GRCm39) missense probably benign 0.26
R7556:Nomo1 UTSW 7 45,715,642 (GRCm39) missense probably damaging 1.00
R7834:Nomo1 UTSW 7 45,706,162 (GRCm39) critical splice donor site probably null
R7979:Nomo1 UTSW 7 45,690,986 (GRCm39) missense probably null
R8193:Nomo1 UTSW 7 45,692,037 (GRCm39) missense possibly damaging 0.51
R8841:Nomo1 UTSW 7 45,707,911 (GRCm39) missense probably benign 0.00
R8906:Nomo1 UTSW 7 45,722,004 (GRCm39) missense probably benign 0.06
R9049:Nomo1 UTSW 7 45,715,597 (GRCm39) missense probably benign 0.01
R9087:Nomo1 UTSW 7 45,732,748 (GRCm39) missense probably benign 0.00
R9176:Nomo1 UTSW 7 45,730,828 (GRCm39) missense possibly damaging 0.88
Z1177:Nomo1 UTSW 7 45,715,697 (GRCm39) missense probably benign 0.17
Predicted Primers PCR Primer
(F):5'- TAGGTTGCAAGTGGGTCACAG -3'
(R):5'- AGAGGAAGTACACCTATGGTACC -3'

Sequencing Primer
(F):5'- TCACAGTAGAGTGCAAGGCTTCTC -3'
(R):5'- AGTACACCTATGGTACCCCGGG -3'
Posted On 2015-01-23