Incidental Mutation 'R2910:Lypd8l'
| ID |
261201 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Lypd8l
|
| Ensembl Gene |
ENSMUSG00000037145 |
| Gene Name |
LY6/PLAUR domain containing 8 like |
| Synonyms |
2210407C18Rik |
| MMRRC Submission |
040497-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.059)
|
| Stock # |
R2910 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
11 |
| Chromosomal Location |
58499030-58504318 bp(-) (GRCm39) |
| Type of Mutation |
nonsense |
| DNA Base Change (assembly) |
G to A
at 58499252 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Glutamine to Stop codon
at position 189
(Q189*)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000104449
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000048801]
[ENSMUST00000108821]
|
| AlphaFold |
Q6YI28 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000048801
AA Change: Q189*
|
| SMART Domains |
Protein: ENSMUSP00000039283
Gene: ENSMUSG00000037145
AA Change: Q189*
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
26 |
N/A |
INTRINSIC |
|
low complexity region
|
209 |
220 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000108821
AA Change: Q189*
|
| SMART Domains |
Protein: ENSMUSP00000104449
Gene: ENSMUSG00000037145
AA Change: Q189*
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
26 |
N/A |
INTRINSIC |
|
low complexity region
|
209 |
220 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000126695
|
| Meta Mutation Damage Score |
0.9755 |
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.4%
- 20x: 95.3%
|
| Validation Efficiency |
96% (49/51) |
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 48 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abcf3 |
A |
G |
16: 20,378,982 (GRCm39) |
T645A |
probably damaging |
Het |
| Acap1 |
A |
G |
11: 69,777,902 (GRCm39) |
|
probably benign |
Het |
| Adgrv1 |
G |
A |
13: 81,705,238 (GRCm39) |
A1524V |
possibly damaging |
Het |
| Agbl1 |
A |
G |
7: 76,069,586 (GRCm39) |
N121D |
probably benign |
Het |
| Ahnak |
A |
G |
19: 8,989,018 (GRCm39) |
D3434G |
probably damaging |
Het |
| Ankrd11 |
A |
T |
8: 123,635,537 (GRCm39) |
D32E |
probably damaging |
Het |
| Asxl1 |
T |
C |
2: 153,242,959 (GRCm39) |
S1170P |
probably benign |
Het |
| Atp8b3 |
G |
A |
10: 80,355,746 (GRCm39) |
S1322F |
possibly damaging |
Het |
| Car15 |
G |
A |
16: 17,656,006 (GRCm39) |
|
probably benign |
Het |
| Cep104 |
T |
A |
4: 154,079,884 (GRCm39) |
|
probably null |
Het |
| Cnnm1 |
A |
G |
19: 43,458,086 (GRCm39) |
I633V |
possibly damaging |
Het |
| Cog8 |
A |
T |
8: 107,780,853 (GRCm39) |
V135E |
probably benign |
Het |
| Cts6 |
A |
G |
13: 61,344,215 (GRCm39) |
V279A |
probably damaging |
Het |
| Ddx1 |
C |
T |
12: 13,281,441 (GRCm39) |
|
probably null |
Het |
| Dock2 |
A |
G |
11: 34,182,910 (GRCm39) |
|
probably benign |
Het |
| Ero1b |
T |
A |
13: 12,615,178 (GRCm39) |
D336E |
probably damaging |
Het |
| F11 |
C |
G |
8: 45,694,486 (GRCm39) |
*625S |
probably null |
Het |
| F5 |
A |
G |
1: 164,032,389 (GRCm39) |
M1779V |
probably benign |
Het |
| Fam227a |
A |
T |
15: 79,520,935 (GRCm39) |
D296E |
possibly damaging |
Het |
| Fbxo38 |
T |
C |
18: 62,652,878 (GRCm39) |
D523G |
probably benign |
Het |
| Ggt1 |
G |
A |
10: 75,416,430 (GRCm39) |
V275M |
probably benign |
Het |
| Gm379 |
A |
C |
X: 107,708,371 (GRCm39) |
F43V |
possibly damaging |
Het |
| Grhl3 |
T |
C |
4: 135,286,457 (GRCm39) |
I75V |
probably benign |
Het |
| Iqcm |
A |
T |
8: 76,441,404 (GRCm39) |
I226F |
probably benign |
Het |
| Kcnq1 |
T |
G |
7: 142,979,699 (GRCm39) |
L615R |
probably damaging |
Het |
| Lcp2 |
G |
A |
11: 34,018,970 (GRCm39) |
|
probably null |
Het |
| Mbtps1 |
A |
G |
8: 120,272,776 (GRCm39) |
I123T |
possibly damaging |
Het |
| Muc5ac |
C |
T |
7: 141,361,378 (GRCm39) |
T1563I |
probably damaging |
Het |
| Odf2l |
A |
C |
3: 144,830,084 (GRCm39) |
I19L |
probably benign |
Het |
| Or5ak23 |
T |
A |
2: 85,244,695 (GRCm39) |
H176L |
probably damaging |
Het |
| Or5h25 |
C |
T |
16: 58,930,544 (GRCm39) |
R143H |
probably benign |
Het |
| Pigr |
A |
G |
1: 130,777,270 (GRCm39) |
D692G |
probably damaging |
Het |
| Pkd1l3 |
A |
G |
8: 110,394,268 (GRCm39) |
|
probably benign |
Het |
| Plekhg4 |
TAGTCGATGCCCGAGTC |
TAGTC |
8: 106,103,084 (GRCm39) |
|
probably benign |
Het |
| Reep2 |
T |
C |
18: 34,978,743 (GRCm39) |
|
probably null |
Het |
| Rubcnl |
C |
T |
14: 75,278,248 (GRCm39) |
T344I |
probably benign |
Het |
| Sema6d |
C |
A |
2: 124,506,957 (GRCm39) |
P941T |
probably damaging |
Het |
| Shcbp1l |
C |
A |
1: 153,304,372 (GRCm39) |
L144I |
probably damaging |
Het |
| Slc7a1 |
T |
C |
5: 148,289,067 (GRCm39) |
E60G |
probably benign |
Het |
| Snx2 |
C |
T |
18: 53,332,946 (GRCm39) |
P207S |
probably damaging |
Het |
| Spata31 |
T |
G |
13: 65,068,250 (GRCm39) |
S133A |
probably benign |
Het |
| Tac1 |
A |
G |
6: 7,559,097 (GRCm39) |
|
probably null |
Het |
| Tfpi |
A |
C |
2: 84,274,437 (GRCm39) |
V184G |
possibly damaging |
Het |
| Tmeff1 |
C |
A |
4: 48,614,961 (GRCm39) |
N139K |
possibly damaging |
Het |
| Tnxb |
A |
G |
17: 34,891,424 (GRCm39) |
D589G |
probably damaging |
Het |
| Trpc1 |
C |
A |
9: 95,631,895 (GRCm39) |
A16S |
probably benign |
Het |
| Vmn2r106 |
A |
C |
17: 20,498,946 (GRCm39) |
L322V |
probably damaging |
Het |
| Vmn2r69 |
G |
T |
7: 85,055,918 (GRCm39) |
A740D |
probably damaging |
Het |
|
| Other mutations in Lypd8l |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00763:Lypd8l
|
APN |
11 |
58,503,707 (GRCm39) |
utr 5 prime |
probably benign |
|
|
IGL02341:Lypd8l
|
APN |
11 |
58,503,656 (GRCm39) |
missense |
possibly damaging |
0.70 |
|
IGL02609:Lypd8l
|
APN |
11 |
58,503,442 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0466:Lypd8l
|
UTSW |
11 |
58,503,331 (GRCm39) |
splice site |
probably benign |
|
|
R0598:Lypd8l
|
UTSW |
11 |
58,499,230 (GRCm39) |
missense |
probably benign |
0.27 |
|
R0612:Lypd8l
|
UTSW |
11 |
58,502,799 (GRCm39) |
splice site |
probably null |
|
|
R2352:Lypd8l
|
UTSW |
11 |
58,503,676 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2352:Lypd8l
|
UTSW |
11 |
58,502,934 (GRCm39) |
nonsense |
probably null |
|
|
R2439:Lypd8l
|
UTSW |
11 |
58,501,603 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2911:Lypd8l
|
UTSW |
11 |
58,499,252 (GRCm39) |
nonsense |
probably null |
|
|
R2991:Lypd8l
|
UTSW |
11 |
58,501,516 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
R3609:Lypd8l
|
UTSW |
11 |
58,503,384 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R4863:Lypd8l
|
UTSW |
11 |
58,503,338 (GRCm39) |
critical splice donor site |
probably null |
|
|
R4925:Lypd8l
|
UTSW |
11 |
58,501,513 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R6954:Lypd8l
|
UTSW |
11 |
58,499,314 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7725:Lypd8l
|
UTSW |
11 |
58,499,325 (GRCm39) |
missense |
probably benign |
0.21 |
|
R9148:Lypd8l
|
UTSW |
11 |
58,499,338 (GRCm39) |
missense |
probably benign |
0.08 |
|
Z1186:Lypd8l
|
UTSW |
11 |
58,503,397 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1186:Lypd8l
|
UTSW |
11 |
58,503,387 (GRCm39) |
missense |
probably benign |
0.14 |
|
Z1186:Lypd8l
|
UTSW |
11 |
58,499,335 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1187:Lypd8l
|
UTSW |
11 |
58,503,397 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1187:Lypd8l
|
UTSW |
11 |
58,503,387 (GRCm39) |
missense |
probably benign |
0.14 |
|
Z1187:Lypd8l
|
UTSW |
11 |
58,499,335 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1188:Lypd8l
|
UTSW |
11 |
58,503,397 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1188:Lypd8l
|
UTSW |
11 |
58,503,387 (GRCm39) |
missense |
probably benign |
0.14 |
|
Z1188:Lypd8l
|
UTSW |
11 |
58,499,335 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1189:Lypd8l
|
UTSW |
11 |
58,503,397 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1189:Lypd8l
|
UTSW |
11 |
58,503,387 (GRCm39) |
missense |
probably benign |
0.14 |
|
Z1189:Lypd8l
|
UTSW |
11 |
58,499,335 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1190:Lypd8l
|
UTSW |
11 |
58,503,397 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1190:Lypd8l
|
UTSW |
11 |
58,503,387 (GRCm39) |
missense |
probably benign |
0.14 |
|
Z1190:Lypd8l
|
UTSW |
11 |
58,499,335 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1191:Lypd8l
|
UTSW |
11 |
58,503,397 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1191:Lypd8l
|
UTSW |
11 |
58,503,387 (GRCm39) |
missense |
probably benign |
0.14 |
|
Z1191:Lypd8l
|
UTSW |
11 |
58,499,335 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1192:Lypd8l
|
UTSW |
11 |
58,503,397 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1192:Lypd8l
|
UTSW |
11 |
58,503,387 (GRCm39) |
missense |
probably benign |
0.14 |
|
Z1192:Lypd8l
|
UTSW |
11 |
58,499,335 (GRCm39) |
missense |
probably benign |
0.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- GGGACATGCAGAAATAGTCATCTC -3'
(R):5'- AGATCATTCTGGGCACATTTCTTTC -3'
Sequencing Primer
(F):5'- AATCACCAGTCTTTATTTGTTCCATG -3'
(R):5'- TCTTTCCCCAGAGAACATGGGTG -3'
|
| Posted On |
2015-01-23 |
Incidental Mutation