Incidental Mutation 'R2902:Gm9920'
ID 261525
Institutional Source Beutler Lab
Gene Symbol Gm9920
Ensembl Gene ENSMUSG00000053749
Gene Name predicted gene 9920
Synonyms
Accession Numbers
Essential gene? Probably non essential (E-score: 0.076) question?
Stock # R2902 (G1)
Quality Score 225
Status Not validated
Chromosome 15
Chromosomal Location 54963313-54976978 bp(-) (GRCm39)
Type of Mutation utr 5 prime
DNA Base Change (assembly) C to A at 54975867 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000098225 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000096433] [ENSMUST00000100659] [ENSMUST00000100660] [ENSMUST00000110230]
AlphaFold no structure available at present
Predicted Effect probably benign
Transcript: ENSMUST00000096433
SMART Domains Protein: ENSMUSP00000094167
Gene: ENSMUSG00000022419

DomainStartEndE-ValueType
low complexity region 4 21 N/A INTRINSIC
DEP 45 119 3.86e-21 SMART
DEP 146 219 1.37e-17 SMART
low complexity region 274 299 N/A INTRINSIC
PDZ 338 407 8.28e-7 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000100659
SMART Domains Protein: ENSMUSP00000098224
Gene: ENSMUSG00000053749

DomainStartEndE-ValueType
low complexity region 24 50 N/A INTRINSIC
low complexity region 57 67 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000100660
SMART Domains Protein: ENSMUSP00000098225
Gene: ENSMUSG00000022419

DomainStartEndE-ValueType
low complexity region 4 21 N/A INTRINSIC
DEP 45 119 3.86e-21 SMART
DEP 146 219 1.37e-17 SMART
low complexity region 274 299 N/A INTRINSIC
Blast:PDZ 338 367 7e-14 BLAST
Predicted Effect noncoding transcript
Transcript: ENSMUST00000110230
SMART Domains Protein: ENSMUSP00000105859
Gene: ENSMUSG00000053749

DomainStartEndE-ValueType
low complexity region 24 50 N/A INTRINSIC
low complexity region 57 67 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000137301
Predicted Effect noncoding transcript
Transcript: ENSMUST00000148544
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.7%
  • 10x: 97.5%
  • 20x: 95.8%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 45 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Apobec2 T C 17: 48,730,409 (GRCm39) T86A probably benign Het
C1qtnf1 A G 11: 118,338,930 (GRCm39) probably null Het
Cacng3 A G 7: 122,353,750 (GRCm39) K78R possibly damaging Het
Cep68 A G 11: 20,190,187 (GRCm39) L275P probably damaging Het
Chrm4 A G 2: 91,758,302 (GRCm39) K237E probably benign Het
Clvs1 A G 4: 9,281,972 (GRCm39) K139E probably damaging Het
Col25a1 A T 3: 130,340,040 (GRCm39) E351V probably damaging Het
Cyp4f18 A T 8: 72,756,255 (GRCm39) I107N probably damaging Het
Dagla A G 19: 10,225,467 (GRCm39) L899P probably damaging Het
Dnah3 T C 7: 119,550,722 (GRCm39) K3199R possibly damaging Het
Ecpas G A 4: 58,809,691 (GRCm39) T1592M probably benign Het
Emc10 G A 7: 44,142,616 (GRCm39) R109W probably damaging Het
Fam186a G T 15: 99,843,049 (GRCm39) T1065K possibly damaging Het
Ferd3l T G 12: 33,978,952 (GRCm39) M155R probably damaging Het
Fgd4 A G 16: 16,243,729 (GRCm39) Y602H probably damaging Het
Gldn T C 9: 54,243,098 (GRCm39) L360P possibly damaging Het
Inhbc T C 10: 127,193,621 (GRCm39) T132A probably benign Het
Krt23 T C 11: 99,374,797 (GRCm39) D260G probably damaging Het
Lrch3 G A 16: 32,770,766 (GRCm39) A123T probably damaging Het
Mark2 A T 19: 7,260,813 (GRCm39) S408T probably benign Het
Nme8 A T 13: 19,859,834 (GRCm39) V23E probably benign Het
Nod2 A T 8: 89,402,091 (GRCm39) I912F probably damaging Het
Nxpe4 A G 9: 48,305,446 (GRCm39) I279V probably benign Het
Oas3 A G 5: 120,896,982 (GRCm39) F880L probably damaging Het
Or5ak23 C T 2: 85,244,396 (GRCm39) V276M possibly damaging Het
Or6c6c A G 10: 129,541,320 (GRCm39) H191R probably benign Het
Or8c11 T A 9: 38,289,337 (GRCm39) N53K possibly damaging Het
Pcnt C T 10: 76,211,064 (GRCm39) R2371H probably damaging Het
Prex2 A T 1: 11,278,838 (GRCm39) N1389I possibly damaging Het
Prf1 A T 10: 61,136,098 (GRCm39) N125Y probably damaging Het
Prr12 C T 7: 44,697,036 (GRCm39) G960R unknown Het
Rap1b A G 10: 117,660,507 (GRCm39) S17P probably damaging Het
Rhot2 G T 17: 26,062,950 (GRCm39) Q63K probably damaging Het
Rnpepl1 C T 1: 92,844,102 (GRCm39) L278F probably damaging Het
Slco1a6 A G 6: 142,042,046 (GRCm39) L510P probably damaging Het
Ssc4d G A 5: 135,993,517 (GRCm39) P113L possibly damaging Het
Sv2a A T 3: 96,101,072 (GRCm39) N690I possibly damaging Het
Tbc1d24 T C 17: 24,426,220 (GRCm39) Y452C probably benign Het
Tmem132d G T 5: 127,860,832 (GRCm39) H1096Q probably benign Het
Tmem82 C A 4: 141,343,775 (GRCm39) G165V probably benign Het
Tpo T A 12: 30,169,448 (GRCm39) T96S possibly damaging Het
Triobp A G 15: 78,857,618 (GRCm39) E1073G possibly damaging Het
Tspoap1 C T 11: 87,668,801 (GRCm39) P1358L probably benign Het
Usp47 A G 7: 111,692,658 (GRCm39) Y1020C probably damaging Het
Washc4 C A 10: 83,390,627 (GRCm39) Y153* probably null Het
Other mutations in Gm9920
AlleleSourceChrCoordTypePredicted EffectPPH Score
R0233:Gm9920 UTSW 15 54,975,857 (GRCm39) utr 5 prime probably benign
R4025:Gm9920 UTSW 15 54,975,966 (GRCm39) missense probably benign 0.03
R5366:Gm9920 UTSW 15 54,975,705 (GRCm39) unclassified probably benign
R5377:Gm9920 UTSW 15 54,972,371 (GRCm39) unclassified probably benign
Predicted Primers PCR Primer
(F):5'- TTCCCCAGCATGAGTTTGGG -3'
(R):5'- AGAGCCCATCTACTGAGTGC -3'

Sequencing Primer
(F):5'- TGCAAAAACTCAGGGCTCAG -3'
(R):5'- GAGTGCCTTTCCTTACCGGAG -3'
Posted On 2015-01-23