Mutagenetix > Incidental Mutation

Incidental Mutation 'T0722:Zmym1'

262102

Institutional Source

Beutler Lab

Gene Symbol

Zmym1

Ensembl Gene

ENSMUSG00000043872

Gene Name

zinc finger, MYM domain containing 1

Synonyms

5830412B09Rik

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.194) question?

Stock #

T0722 (G3) of strain 711

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

126940887-126954945 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 126943466 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Glutamine at position 307 (H307Q)

Ref Sequence

ENSEMBL: ENSMUSP00000101708 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000055013] [ENSMUST00000106099] [ENSMUST00000106102] [ENSMUST00000136186]

AlphaFold

Q3TJB1

Predicted Effect

probably benign
Transcript: ENSMUST00000055013
AA Change: H307Q

PolyPhen 2 Score 0.051 (Sensitivity: 0.94; Specificity: 0.83)

SMART Domains

Protein: ENSMUSP00000050669
Gene: ENSMUSG00000043872
AA Change: H307Q

Domain	Start	End	E-Value	Type
Pfam:zf-FCS	6	46	2.4e-8	PFAM
Pfam:zf-FCS	53	96	1.6e-10	PFAM
low complexity region	155	168	N/A	INTRINSIC
low complexity region	229	243	N/A	INTRINSIC
Pfam:DUF4371	335	569	4.9e-55	PFAM
Pfam:Dimer_Tnp_hAT	870	959	5.1e-18	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000106099

SMART Domains

Protein: ENSMUSP00000101705
Gene: ENSMUSG00000043872

Domain	Start	End	E-Value	Type
Pfam:zf-FCS	6	46	3.3e-9	PFAM
Pfam:zf-FCS	53	96	4.6e-10	PFAM
low complexity region	155	168	N/A	INTRINSIC
Pfam:DUF4371	237	471	2.8e-52	PFAM
Pfam:Dimer_Tnp_hAT	772	861	5.3e-18	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000106102
AA Change: H307Q

PolyPhen 2 Score 0.051 (Sensitivity: 0.94; Specificity: 0.83)

SMART Domains

Protein: ENSMUSP00000101708
Gene: ENSMUSG00000043872
AA Change: H307Q

Domain	Start	End	E-Value	Type
Pfam:zf-FCS	6	46	7.8e-9	PFAM
Pfam:zf-FCS	53	96	1.1e-9	PFAM
low complexity region	155	168	N/A	INTRINSIC
low complexity region	229	243	N/A	INTRINSIC
Pfam:DUF4371	335	569	7.4e-52	PFAM
Pfam:Dimer_Tnp_hAT	870	959	1.7e-17	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000117934

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000124429

Predicted Effect

probably benign
Transcript: ENSMUST00000136186

SMART Domains

Protein: ENSMUSP00000120772
Gene: ENSMUSG00000043872

Domain	Start	End	E-Value	Type
Pfam:zf-FCS	6	46	1.5e-10	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000137236

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000152607

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000140605

Coding Region Coverage

1x: 99.5%
3x: 98.9%
10x: 97.6%
20x: 95.5%

Validation Efficiency

95% (42/44)

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam6b	A	G	12: 113,453,197 (GRCm39)	T5A	possibly damaging	Het
Adam6b	T	A	12: 113,454,888 (GRCm39)	D568E	probably benign	Het
Ago3	C	T	4: 126,298,056 (GRCm39)	V155I	probably benign	Het
Ago3	G	A	4: 126,298,103 (GRCm39)	A139V	probably benign	Het
Ago3	C	T	4: 126,298,098 (GRCm39)	A141T	probably benign	Het
Ago3	T	G	4: 126,298,089 (GRCm39)	T144P	probably benign	Het
Ahdc1	ACCTCCT	ACCTCCTCCT	4: 132,790,065 (GRCm39)		probably benign	Het
Atp6v1g3	T	A	1: 138,201,591 (GRCm39)		probably benign	Het
Azin2	A	G	4: 128,839,927 (GRCm39)	Y222H	probably benign	Het
Bicd2	C	A	13: 49,533,127 (GRCm39)	P571Q	probably benign	Het
Camta2	A	G	11: 70,574,831 (GRCm39)	I75T	probably damaging	Het
Casp1	A	T	9: 5,299,851 (GRCm39)	H108L	probably benign	Het
Cdk5r1	G	T	11: 80,368,707 (GRCm39)	V125F	probably benign	Het
Cherp	TTGGACCTGGACCTGGACCTGGACCTGGA	TTGGACCTGGACCTGGACCTGGA	8: 73,215,878 (GRCm39)		probably benign	Het
Cngb1	A	G	8: 96,023,278 (GRCm39)	M240T	probably benign	Het
Cngb1	G	A	8: 96,030,342 (GRCm39)		probably benign	Het
Cngb1	T	C	8: 96,030,324 (GRCm39)		probably benign	Het
Cngb1	G	T	8: 96,024,447 (GRCm39)	Q205K	probably damaging	Het
Cog8	G	T	8: 107,775,625 (GRCm39)	L580I	probably benign	Het
Copa	A	G	1: 171,939,515 (GRCm39)	E593G	possibly damaging	Het
Ctrc	T	TA	4: 141,572,507 (GRCm39)		probably null	Het
Cwf19l2	T	C	9: 3,456,755 (GRCm39)	F696S	probably benign	Het
Ddi2	G	A	4: 141,440,784 (GRCm39)		probably benign	Het
Eml5	T	C	12: 98,807,841 (GRCm39)	D984G	probably null	Het
Fam135b	T	G	15: 71,335,734 (GRCm39)	T487P	probably damaging	Het
Fstl3	A	G	10: 79,615,997 (GRCm39)	Y161C	probably damaging	Het
Gja4	G	C	4: 127,206,024 (GRCm39)	H246Q	probably benign	Het
Gm8186	C	T	17: 26,318,101 (GRCm39)	R32Q	probably benign	Het
Jakmip1	C	A	5: 37,276,247 (GRCm39)	A519D	probably damaging	Het
Jcad	G	T	18: 4,675,531 (GRCm39)	A1098S	probably benign	Het
Klhl14	T	C	18: 21,691,192 (GRCm39)	Y446C	probably damaging	Het
Lims1	A	G	10: 58,254,277 (GRCm39)	N344D	probably benign	Het
Marco	A	T	1: 120,402,441 (GRCm39)	W502R	probably damaging	Het
Mmp13	G	T	9: 7,280,857 (GRCm39)	M413I	possibly damaging	Het
Mmp25	G	A	17: 23,850,192 (GRCm39)	A456V	possibly damaging	Het
Msi2	A	T	11: 88,285,423 (GRCm39)	M207K	probably damaging	Het
Myh8	G	A	11: 67,195,262 (GRCm39)	R1692Q	probably benign	Het
Nbas	A	G	12: 13,402,809 (GRCm39)	I788V	probably benign	Het
Nup188	A	G	2: 30,212,693 (GRCm39)	D632G	probably damaging	Het
Opa1	T	C	16: 29,429,748 (GRCm39)		probably null	Het
Or12k7	T	G	2: 36,958,449 (GRCm39)	L44R	probably damaging	Het
Or1n2	T	C	2: 36,797,582 (GRCm39)	V208A	probably benign	Het
Or4c114	A	G	2: 88,905,303 (GRCm39)	V44A	probably benign	Het
Or5w17	T	A	2: 87,583,467 (GRCm39)	Y290F	probably damaging	Het
Pabpc1l	G	A	2: 163,884,340 (GRCm39)	G359D	possibly damaging	Het
Plekhm2	TTCCTCCTCCT	TTCCTCCT	4: 141,359,292 (GRCm39)		probably benign	Het
Pomgnt1	C	T	4: 115,994,624 (GRCm39)		probably benign	Het
Psma5-ps	A	G	10: 85,149,457 (GRCm39)		noncoding transcript	Het
Qser1	A	G	2: 104,617,177 (GRCm39)	C1122R	possibly damaging	Het
Rfx8	A	G	1: 39,722,772 (GRCm39)	S282P	probably damaging	Het
Sec14l2	C	T	11: 4,053,673 (GRCm39)		probably null	Het
Sim2	C	A	16: 93,910,281 (GRCm39)	H228N	probably benign	Het
Slc15a2	A	G	16: 36,772,445 (GRCm38)	M179T	probably benign	Het
Slc30a6	T	A	17: 74,719,319 (GRCm39)		probably null	Het
Smarcc1	G	A	9: 110,035,153 (GRCm39)	E859K	possibly damaging	Het
Snx1	CTT	CTTGTT	9: 66,012,209 (GRCm39)		probably benign	Het
Spen	A	G	4: 141,201,664 (GRCm39)	V2321A	probably benign	Het
Spta1	A	G	1: 174,018,632 (GRCm39)		probably benign	Het
Sytl1	C	A	4: 132,984,162 (GRCm39)		probably benign	Het
Sytl1	A	G	4: 132,984,164 (GRCm39)		probably benign	Het
Tent4a	G	A	13: 69,655,074 (GRCm39)	R224*	probably null	Het
Terf2	T	C	8: 107,803,306 (GRCm39)	K425E	probably benign	Het
Tmem26	A	G	10: 68,614,548 (GRCm39)	E321G	probably benign	Het
Toe1	T	C	4: 116,663,290 (GRCm39)	I62M	probably benign	Het
Uck2	A	T	1: 167,062,280 (GRCm39)	D149E	probably benign	Het
Wnt5a	G	A	14: 28,233,882 (GRCm39)	A17T	probably benign	Het
Yif1b	T	C	7: 28,938,038 (GRCm39)		probably null	Het
Zbtb8a	T	C	4: 129,254,005 (GRCm39)	H163R	probably benign	Het
Zbtb8a	GG	GGATG	4: 129,253,812 (GRCm39)		probably benign	Het
Zkscan4	AGAGGAG	AGAG	13: 21,663,370 (GRCm39)		probably benign	Het

Other mutations in Zmym1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01140:Zmym1	APN	4	126,943,435 (GRCm39)	missense	probably damaging	1.00
IGL02326:Zmym1	APN	4	126,941,553 (GRCm39)	missense	probably damaging	1.00
IGL02392:Zmym1	APN	4	126,942,256 (GRCm39)	missense	probably damaging	1.00
IGL02431:Zmym1	APN	4	126,941,557 (GRCm39)	nonsense	probably null
IGL02512:Zmym1	APN	4	126,942,465 (GRCm39)	missense	probably damaging	1.00
IGL03303:Zmym1	APN	4	126,942,927 (GRCm39)	missense	probably damaging	1.00
BB009:Zmym1	UTSW	4	126,944,578 (GRCm39)	missense	possibly damaging	0.77
BB019:Zmym1	UTSW	4	126,944,578 (GRCm39)	missense	possibly damaging	0.77
R0195:Zmym1	UTSW	4	126,941,704 (GRCm39)	missense	possibly damaging	0.85
R0266:Zmym1	UTSW	4	126,941,818 (GRCm39)	missense	possibly damaging	0.86
R0416:Zmym1	UTSW	4	126,952,613 (GRCm39)	missense	probably benign	0.00
R1374:Zmym1	UTSW	4	126,943,404 (GRCm39)	missense	probably damaging	1.00
R1480:Zmym1	UTSW	4	126,942,405 (GRCm39)	missense	probably damaging	0.99
R1704:Zmym1	UTSW	4	126,942,177 (GRCm39)	missense	probably damaging	1.00
R1806:Zmym1	UTSW	4	126,941,872 (GRCm39)	missense	probably damaging	1.00
R1815:Zmym1	UTSW	4	126,942,814 (GRCm39)	missense	possibly damaging	0.76
R2124:Zmym1	UTSW	4	126,943,363 (GRCm39)	missense	probably benign	0.05
R2169:Zmym1	UTSW	4	126,947,996 (GRCm39)	splice site	probably null
R4027:Zmym1	UTSW	4	126,943,672 (GRCm39)	missense	probably benign	0.08
R4410:Zmym1	UTSW	4	126,941,897 (GRCm39)	nonsense	probably null
R4572:Zmym1	UTSW	4	126,944,628 (GRCm39)	missense	probably benign	0.39
R4788:Zmym1	UTSW	4	126,948,090 (GRCm39)	missense	probably benign	0.10
R5120:Zmym1	UTSW	4	126,945,230 (GRCm39)	splice site	probably null
R5130:Zmym1	UTSW	4	126,942,451 (GRCm39)	missense	probably damaging	1.00
R5615:Zmym1	UTSW	4	126,943,191 (GRCm39)	missense	probably damaging	1.00
R6190:Zmym1	UTSW	4	126,941,677 (GRCm39)	missense	probably damaging	0.99
R7426:Zmym1	UTSW	4	126,943,191 (GRCm39)	missense	possibly damaging	0.81
R7464:Zmym1	UTSW	4	126,952,728 (GRCm39)	nonsense	probably null
R7540:Zmym1	UTSW	4	126,942,550 (GRCm39)	missense	probably benign
R7779:Zmym1	UTSW	4	126,948,038 (GRCm39)	missense	probably benign
R7807:Zmym1	UTSW	4	126,941,667 (GRCm39)	missense	probably damaging	1.00
R7876:Zmym1	UTSW	4	126,941,496 (GRCm39)	missense	probably damaging	0.98
R7932:Zmym1	UTSW	4	126,944,578 (GRCm39)	missense	possibly damaging	0.77
R8183:Zmym1	UTSW	4	126,952,649 (GRCm39)	missense	probably benign	0.07
R8276:Zmym1	UTSW	4	126,948,051 (GRCm39)	missense	probably damaging	0.99
R8744:Zmym1	UTSW	4	126,945,165 (GRCm39)	missense	probably damaging	1.00
R8798:Zmym1	UTSW	4	126,943,664 (GRCm39)	missense	possibly damaging	0.90
R9199:Zmym1	UTSW	4	126,944,623 (GRCm39)	missense	possibly damaging	0.80
R9385:Zmym1	UTSW	4	126,952,683 (GRCm39)	missense	probably damaging	1.00
T0722:Zmym1	UTSW	4	126,942,043 (GRCm39)	missense	probably benign	0.01
T0722:Zmym1	UTSW	4	126,941,740 (GRCm39)	missense	probably benign	0.00
T0975:Zmym1	UTSW	4	126,943,466 (GRCm39)	missense	probably benign	0.05
T0975:Zmym1	UTSW	4	126,942,043 (GRCm39)	missense	probably benign	0.01
T0975:Zmym1	UTSW	4	126,941,740 (GRCm39)	missense	probably benign	0.00

Predicted Primers

Posted On

2015-02-04