Incidental Mutation 'R3038:Lmo2'
ID 264873
Institutional Source Beutler Lab
Gene Symbol Lmo2
Ensembl Gene ENSMUSG00000032698
Gene Name LIM domain only 2
Synonyms Rbtn2, Rhom-2, Rbtn-2
MMRRC Submission 040554-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R3038 (G1)
Quality Score 225
Status Not validated
Chromosome 2
Chromosomal Location 103788340-103812223 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 103811407 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Tyrosine to Histidine at position 147 (Y147H)
Ref Sequence ENSEMBL: ENSMUSP00000106769 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000111139] [ENSMUST00000111140] [ENSMUST00000111143] [ENSMUST00000123437] [ENSMUST00000170926] [ENSMUST00000156813] [ENSMUST00000138815]
AlphaFold P25801
Predicted Effect probably damaging
Transcript: ENSMUST00000111139
AA Change: Y147H

PolyPhen 2 Score 0.991 (Sensitivity: 0.71; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000106769
Gene: ENSMUSG00000032698
AA Change: Y147H

DomainStartEndE-ValueType
low complexity region 22 44 N/A INTRINSIC
low complexity region 60 73 N/A INTRINSIC
LIM 91 145 1.71e-13 SMART
Predicted Effect possibly damaging
Transcript: ENSMUST00000111140
AA Change: Y219H

PolyPhen 2 Score 0.935 (Sensitivity: 0.80; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000106770
Gene: ENSMUSG00000032698
AA Change: Y219H

DomainStartEndE-ValueType
low complexity region 22 44 N/A INTRINSIC
low complexity region 60 73 N/A INTRINSIC
LIM 99 153 4.03e-10 SMART
LIM 163 217 1.71e-13 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000111143
AA Change: Y211H

PolyPhen 2 Score 0.318 (Sensitivity: 0.90; Specificity: 0.89)
SMART Domains Protein: ENSMUSP00000106773
Gene: ENSMUSG00000032698
AA Change: Y211H

DomainStartEndE-ValueType
low complexity region 14 36 N/A INTRINSIC
low complexity region 52 65 N/A INTRINSIC
LIM 91 145 4.03e-10 SMART
LIM 155 209 1.71e-13 SMART
Predicted Effect possibly damaging
Transcript: ENSMUST00000123437
AA Change: Y149H

PolyPhen 2 Score 0.639 (Sensitivity: 0.87; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000117703
Gene: ENSMUSG00000032698
AA Change: Y149H

DomainStartEndE-ValueType
LIM 29 83 4.03e-10 SMART
LIM 93 147 1.71e-13 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000123966
Predicted Effect noncoding transcript
Transcript: ENSMUST00000133210
Predicted Effect possibly damaging
Transcript: ENSMUST00000170926
AA Change: Y149H

PolyPhen 2 Score 0.639 (Sensitivity: 0.87; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000128317
Gene: ENSMUSG00000032698
AA Change: Y149H

DomainStartEndE-ValueType
LIM 29 83 4.03e-10 SMART
LIM 93 147 1.71e-13 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000156813
SMART Domains Protein: ENSMUSP00000122369
Gene: ENSMUSG00000032698

DomainStartEndE-ValueType
LIM 29 83 4.03e-10 SMART
LIM 93 144 1.36e-7 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000138815
SMART Domains Protein: ENSMUSP00000121927
Gene: ENSMUSG00000032698

DomainStartEndE-ValueType
Pfam:LIM 30 59 2.3e-8 PFAM
Meta Mutation Damage Score 0.1446 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.7%
  • 10x: 97.4%
  • 20x: 95.3%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] LMO2 encodes a cysteine-rich, two LIM-domain protein that is required for yolk sac erythropoiesis. The LMO2 protein has a central and crucial role in hematopoietic development and is highly conserved. The LMO2 transcription start site is located approximately 25 kb downstream from the 11p13 T-cell translocation cluster (11p13 ttc), where a number T-cell acute lymphoblastic leukemia-specific translocations occur. Alternative splicing results in multiple transcript variants encoding different isoforms.[provided by RefSeq, Nov 2008]
PHENOTYPE: Homozygotes for a targeted null mutation exhibit lack of yolk sac erythropoiesis and die around embryonic day 10.5. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 17 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Bspry A G 4: 62,415,220 (GRCm39) I468V probably benign Het
Cavin2 T A 1: 51,340,416 (GRCm39) N364K possibly damaging Het
Ces1f T A 8: 93,983,226 (GRCm39) N506I probably damaging Het
Dnhd1 A T 7: 105,369,436 (GRCm39) Q4353L probably damaging Het
Dsc3 T C 18: 20,124,617 (GRCm39) T36A possibly damaging Het
Hydin A G 8: 111,309,321 (GRCm39) T4038A probably damaging Het
Kcnd3 C T 3: 105,566,082 (GRCm39) A421V probably damaging Het
Kif1b T C 4: 149,297,790 (GRCm39) I1083V probably benign Het
Mrgpra1 G A 7: 46,984,744 (GRCm39) Q312* probably null Het
Pcdha1 T A 18: 37,064,064 (GRCm39) F243I probably damaging Het
Ppp1r18 T C 17: 36,179,274 (GRCm39) L383P probably damaging Het
Tmed9 A G 13: 55,744,792 (GRCm39) K207E probably damaging Het
Tnfrsf19 A G 14: 61,209,512 (GRCm39) S253P probably benign Het
Tspear T A 10: 77,722,273 (GRCm39) Y624* probably null Het
Vmn2r16 G A 5: 109,487,199 (GRCm39) C140Y probably damaging Het
Vwa7 T C 17: 35,241,637 (GRCm39) V424A probably damaging Het
Zgpat TGGAGGAGGAGGAGGAGGA TGGAGGAGGAGGAGGA 2: 181,007,811 (GRCm39) probably benign Het
Other mutations in Lmo2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02631:Lmo2 APN 2 103,811,432 (GRCm39) missense probably benign 0.21
R1983:Lmo2 UTSW 2 103,811,407 (GRCm39) missense probably damaging 0.99
R2013:Lmo2 UTSW 2 103,811,407 (GRCm39) missense probably damaging 0.99
R2014:Lmo2 UTSW 2 103,811,407 (GRCm39) missense probably damaging 0.99
R2131:Lmo2 UTSW 2 103,811,407 (GRCm39) missense probably damaging 0.99
R2132:Lmo2 UTSW 2 103,811,407 (GRCm39) missense probably damaging 0.99
R2133:Lmo2 UTSW 2 103,811,407 (GRCm39) missense probably damaging 0.99
R2233:Lmo2 UTSW 2 103,811,407 (GRCm39) missense probably damaging 0.99
R2235:Lmo2 UTSW 2 103,811,407 (GRCm39) missense probably damaging 0.99
R2510:Lmo2 UTSW 2 103,811,407 (GRCm39) missense probably damaging 0.99
R3813:Lmo2 UTSW 2 103,811,407 (GRCm39) missense probably damaging 0.99
R4058:Lmo2 UTSW 2 103,811,407 (GRCm39) missense probably damaging 0.99
R4059:Lmo2 UTSW 2 103,811,407 (GRCm39) missense probably damaging 0.99
R4448:Lmo2 UTSW 2 103,811,407 (GRCm39) missense probably damaging 0.99
R4450:Lmo2 UTSW 2 103,811,407 (GRCm39) missense probably damaging 0.99
R4544:Lmo2 UTSW 2 103,806,382 (GRCm39) missense probably damaging 1.00
R4805:Lmo2 UTSW 2 103,811,407 (GRCm39) missense probably damaging 0.99
R4808:Lmo2 UTSW 2 103,811,407 (GRCm39) missense probably damaging 0.99
R4975:Lmo2 UTSW 2 103,806,488 (GRCm39) nonsense probably null
R5310:Lmo2 UTSW 2 103,806,445 (GRCm39) missense probably damaging 0.98
R5823:Lmo2 UTSW 2 103,811,417 (GRCm39) missense probably damaging 1.00
R6267:Lmo2 UTSW 2 103,800,946 (GRCm39) missense possibly damaging 0.86
R6296:Lmo2 UTSW 2 103,800,946 (GRCm39) missense possibly damaging 0.86
R6949:Lmo2 UTSW 2 103,801,018 (GRCm39) start codon destroyed probably null 0.53
R8051:Lmo2 UTSW 2 103,801,045 (GRCm39) missense possibly damaging 0.95
R8719:Lmo2 UTSW 2 103,811,264 (GRCm39) missense probably damaging 0.98
R8746:Lmo2 UTSW 2 103,806,384 (GRCm39) missense possibly damaging 0.85
Predicted Primers PCR Primer
(F):5'- TCTGTGCATCCTGTGACAAG -3'
(R):5'- AATTCTCTCTAAGGGCTGGTCC -3'

Sequencing Primer
(F):5'- ATCCTGTGACAAGCGGATC -3'
(R):5'- GAAGTCTCAGCCTTTGCATTATG -3'
Posted On 2015-02-05