Incidental Mutation 'R3025:Vmn1r57'
ID |
265798 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Vmn1r57
|
Ensembl Gene |
ENSMUSG00000091652 |
Gene Name |
vomeronasal 1 receptor 57 |
Synonyms |
Gm7519 |
MMRRC Submission |
040541-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.053)
|
Stock # |
R3025 (G1)
|
Quality Score |
225 |
Status
|
Not validated
|
Chromosome |
7 |
Chromosomal Location |
5223477-5224409 bp(+) (GRCm39) |
Type of Mutation |
nonsense |
DNA Base Change (assembly) |
A to T
at 5223714 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Lysine to Stop codon
at position 80
(K80*)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000153848
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000170780]
[ENSMUST00000227798]
[ENSMUST00000228062]
|
AlphaFold |
K7N731 |
Predicted Effect |
probably null
Transcript: ENSMUST00000170780
AA Change: K80*
|
SMART Domains |
Protein: ENSMUSP00000131917 Gene: ENSMUSG00000091652 AA Change: K80*
Domain | Start | End | E-Value | Type |
Pfam:TAS2R
|
1 |
290 |
1.7e-12 |
PFAM |
Pfam:7tm_1
|
20 |
279 |
1.8e-6 |
PFAM |
Pfam:V1R
|
32 |
289 |
1.1e-19 |
PFAM |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000227798
AA Change: K80*
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000227864
|
Predicted Effect |
probably null
Transcript: ENSMUST00000228062
AA Change: K80*
|
Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.2%
- 20x: 94.8%
|
Validation Efficiency |
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 22 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Ace |
T |
A |
11: 105,864,919 (GRCm39) |
|
probably null |
Het |
Akap6 |
A |
G |
12: 53,186,926 (GRCm39) |
T1447A |
probably benign |
Het |
Atp13a2 |
C |
T |
4: 140,721,659 (GRCm39) |
R250C |
probably damaging |
Het |
Cacna1a |
T |
A |
8: 85,306,854 (GRCm39) |
|
probably null |
Het |
Chd6 |
GATCAT |
GAT |
2: 160,808,472 (GRCm39) |
|
probably benign |
Het |
Cptp |
T |
C |
4: 155,951,678 (GRCm39) |
E5G |
possibly damaging |
Het |
Dnajc16 |
C |
A |
4: 141,501,922 (GRCm39) |
V303F |
probably benign |
Het |
Gm10842 |
T |
C |
11: 105,037,902 (GRCm39) |
S62P |
unknown |
Het |
Gm17509 |
T |
C |
13: 117,357,112 (GRCm39) |
|
probably benign |
Het |
Homer1 |
C |
T |
13: 93,538,582 (GRCm39) |
Q142* |
probably null |
Het |
Kcnb2 |
C |
A |
1: 15,781,059 (GRCm39) |
Q644K |
possibly damaging |
Het |
Map3k19 |
T |
C |
1: 127,766,290 (GRCm39) |
|
probably null |
Het |
Msh4 |
T |
A |
3: 153,569,128 (GRCm39) |
H621L |
probably damaging |
Het |
Ogfod1 |
A |
T |
8: 94,789,680 (GRCm39) |
E460D |
probably damaging |
Het |
Or6c65 |
T |
A |
10: 129,603,542 (GRCm39) |
F59Y |
probably damaging |
Het |
Or8k41 |
A |
T |
2: 86,314,083 (GRCm39) |
M1K |
probably null |
Het |
Rp1 |
G |
A |
1: 4,422,898 (GRCm39) |
R61W |
probably damaging |
Het |
Scaf4 |
A |
T |
16: 90,048,826 (GRCm39) |
H329Q |
unknown |
Het |
Sec61a1 |
A |
T |
6: 88,489,202 (GRCm39) |
D166E |
probably damaging |
Het |
Tars2 |
C |
T |
3: 95,654,952 (GRCm39) |
R63H |
possibly damaging |
Het |
Vmn2r106 |
A |
G |
17: 20,499,147 (GRCm39) |
W255R |
probably benign |
Het |
Wdr49 |
C |
G |
3: 75,240,663 (GRCm39) |
C402S |
possibly damaging |
Het |
|
Other mutations in Vmn1r57 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01770:Vmn1r57
|
APN |
7 |
5,223,667 (GRCm39) |
missense |
possibly damaging |
0.61 |
IGL03124:Vmn1r57
|
APN |
7 |
5,224,021 (GRCm39) |
missense |
possibly damaging |
0.91 |
R1779:Vmn1r57
|
UTSW |
7 |
5,223,576 (GRCm39) |
missense |
possibly damaging |
0.89 |
R3917:Vmn1r57
|
UTSW |
7 |
5,223,630 (GRCm39) |
missense |
probably damaging |
1.00 |
R4093:Vmn1r57
|
UTSW |
7 |
5,223,856 (GRCm39) |
missense |
possibly damaging |
0.80 |
R4552:Vmn1r57
|
UTSW |
7 |
5,223,667 (GRCm39) |
missense |
possibly damaging |
0.61 |
R4628:Vmn1r57
|
UTSW |
7 |
5,223,972 (GRCm39) |
missense |
probably damaging |
1.00 |
R5186:Vmn1r57
|
UTSW |
7 |
5,224,107 (GRCm39) |
missense |
probably benign |
0.08 |
R5290:Vmn1r57
|
UTSW |
7 |
5,224,319 (GRCm39) |
missense |
probably damaging |
1.00 |
R5559:Vmn1r57
|
UTSW |
7 |
5,223,898 (GRCm39) |
missense |
probably damaging |
1.00 |
R6372:Vmn1r57
|
UTSW |
7 |
5,223,826 (GRCm39) |
missense |
possibly damaging |
0.61 |
R7105:Vmn1r57
|
UTSW |
7 |
5,223,499 (GRCm39) |
missense |
probably damaging |
1.00 |
R7220:Vmn1r57
|
UTSW |
7 |
5,223,559 (GRCm39) |
missense |
probably null |
1.00 |
R7835:Vmn1r57
|
UTSW |
7 |
5,224,138 (GRCm39) |
missense |
probably benign |
0.44 |
R7872:Vmn1r57
|
UTSW |
7 |
5,223,613 (GRCm39) |
missense |
possibly damaging |
0.48 |
R8310:Vmn1r57
|
UTSW |
7 |
5,224,024 (GRCm39) |
missense |
probably damaging |
1.00 |
R9679:Vmn1r57
|
UTSW |
7 |
5,224,230 (GRCm39) |
missense |
probably benign |
0.09 |
R9681:Vmn1r57
|
UTSW |
7 |
5,224,069 (GRCm39) |
missense |
probably damaging |
0.99 |
X0064:Vmn1r57
|
UTSW |
7 |
5,223,760 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Predicted Primers |
PCR Primer
(F):5'- GGGCAACATCCTTCTGTTTGTC -3'
(R):5'- CTGTGGACCACTGACATTCATTG -3'
Sequencing Primer
(F):5'- GTCCATAACTTCTCTCCAAACTTGAC -3'
(R):5'- CCACTGACATTCATTGGGATGTAAGC -3'
|
Posted On |
2015-02-05 |