Mutagenetix > Incidental Mutation

Incidental Mutation 'R2568:Trim39'

266189

Institutional Source

Beutler Lab

Gene Symbol

Trim39

Ensembl Gene

ENSMUSG00000045409

Gene Name

tripartite motif-containing 39

Synonyms

1100001D15Rik, RING-B box-coiled-coil-B30.2, E130103K13Rik, Rnf23, tfp, RBCC-B30.2

MMRRC Submission

040427-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R2568 (G1)

Quality Score

173

Status

Not validated

Chromosome

Chromosomal Location

36569764-36582896 bp(-) (GRCm39)

Type of Mutation

unclassified

DNA Base Change (assembly)

T to A at 36580056 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000133529 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000042717] [ENSMUST00000113706] [ENSMUST00000173369] [ENSMUST00000173665]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000042717

SMART Domains

Protein: ENSMUSP00000039790
Gene: ENSMUSG00000045409

Domain	Start	End	E-Value	Type
low complexity region	4	21	N/A	INTRINSIC
RING	29	69	1.9e-10	SMART
BBOX	102	143	3.21e-8	SMART
coiled coil region	184	240	N/A	INTRINSIC
PRY	306	359	2.3e-27	SMART
SPRY	360	485	1.95e-31	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000113704

Predicted Effect

probably benign
Transcript: ENSMUST00000113706

SMART Domains

Protein: ENSMUSP00000109336
Gene: ENSMUSG00000045409

Domain	Start	End	E-Value	Type
low complexity region	4	21	N/A	INTRINSIC
RING	29	69	1.9e-10	SMART
BBOX	102	143	3.21e-8	SMART
coiled coil region	184	240	N/A	INTRINSIC
PRY	306	359	2.3e-27	SMART
SPRY	360	485	1.95e-31	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000172832

Predicted Effect

probably benign
Transcript: ENSMUST00000173369

SMART Domains

Protein: ENSMUSP00000133298
Gene: ENSMUSG00000045409

Domain	Start	End	E-Value	Type
low complexity region	4	21	N/A	INTRINSIC
RING	29	69	1.9e-10	SMART
BBOX	102	143	3.21e-8	SMART
coiled coil region	184	240	N/A	INTRINSIC
PRY	314	367	1.23e-27	SMART
SPRY	368	493	1.95e-31	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000173665

SMART Domains

Protein: ENSMUSP00000133529
Gene: ENSMUSG00000045409

Domain	Start	End	E-Value	Type
BBOX	1	40	5.81e-6	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000174197

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 97.0%
20x: 94.1%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. The function of this protein has not been identified. This gene lies within the major histocompatibility complex class I region on chromosome 6. Alternate splicing results in two transcript variants encoding different isoforms. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A730071L15Rik	A	T	11: 6,150,161 (GRCm39)		probably benign	Het
Abca13	A	T	11: 9,283,310 (GRCm39)	N3244I	probably benign	Het
Adgrf5	A	G	17: 43,748,562 (GRCm39)	T219A	probably damaging	Het
Adgrg5	A	T	8: 95,660,649 (GRCm39)	N92I	probably damaging	Het
Agt	A	C	8: 125,283,694 (GRCm39)	V475G	probably damaging	Het
Akap6	A	G	12: 52,934,061 (GRCm39)	K518E	possibly damaging	Het
Apoh	T	G	11: 108,295,697 (GRCm39)	D133E	probably benign	Het
Axdnd1	T	A	1: 156,220,319 (GRCm39)	M234L	possibly damaging	Het
Cacna1d	A	G	14: 29,804,468 (GRCm39)	I1335T	probably damaging	Het
Cdh15	G	A	8: 123,588,763 (GRCm39)	R279Q	probably damaging	Het
Cfap206	T	A	4: 34,711,566 (GRCm39)	K444*	probably null	Het
Clasp2	A	G	9: 113,707,832 (GRCm39)	I614M	probably benign	Het
Col6a4	A	T	9: 105,940,275 (GRCm39)	D1218E	possibly damaging	Het
Cplane1	T	C	15: 8,230,753 (GRCm39)	V1010A	possibly damaging	Het
Csmd3	CCTTTGCGCTT	CCTT	15: 47,604,632 (GRCm39)		probably null	Het
D130043K22Rik	C	T	13: 25,067,874 (GRCm39)	T870M	probably damaging	Het
Dagla	C	A	19: 10,225,516 (GRCm39)	A883S	probably benign	Het
Dhx30	A	G	9: 109,926,263 (GRCm39)	V87A	probably damaging	Het
Dtx1	C	A	5: 120,848,249 (GRCm39)	V44L	possibly damaging	Het
Ecm2	T	A	13: 49,683,605 (GRCm39)	S528T	possibly damaging	Het
Eeig2	T	A	3: 108,886,164 (GRCm39)	N356I	probably benign	Het
Egfem1	A	T	3: 29,637,080 (GRCm39)	N172I	probably damaging	Het
Fam13a	T	G	6: 58,912,594 (GRCm39)	R686S	probably damaging	Het
Fam243	A	G	16: 92,118,207 (GRCm39)	L27P	probably damaging	Het
Fmo1	T	A	1: 162,663,828 (GRCm39)	I234L	probably benign	Het
Foxj2	C	T	6: 122,805,331 (GRCm39)	R68W	probably damaging	Het
Foxo6	A	T	4: 120,125,961 (GRCm39)	M278K	probably benign	Het
Fsip2	A	G	2: 82,820,775 (GRCm39)	S5503G	probably benign	Het
Gdf5	C	G	2: 155,784,010 (GRCm39)	R100G	probably benign	Het
Il1b	A	T	2: 129,209,242 (GRCm39)	D129E	probably damaging	Het
Klhl29	A	G	12: 5,141,350 (GRCm39)	S545P	probably damaging	Het
Krt87	G	T	15: 101,385,708 (GRCm39)	R296S	possibly damaging	Het
Llgl1	T	G	11: 60,599,638 (GRCm39)	S509R	probably damaging	Het
Lmod1	A	T	1: 135,291,702 (GRCm39)	K186*	probably null	Het
Lrpprc	C	T	17: 85,034,077 (GRCm39)	A973T	probably damaging	Het
Marco	T	C	1: 120,422,514 (GRCm39)	H49R	possibly damaging	Het
Mylk4	T	C	13: 32,906,001 (GRCm39)	N394S	probably null	Het
Myo5a	A	G	9: 75,030,322 (GRCm39)	Y147C	probably damaging	Het
Myo5a	T	C	9: 75,059,179 (GRCm39)	V469A	probably damaging	Het
Myot	A	G	18: 44,470,283 (GRCm39)	T87A	probably benign	Het
Nav2	A	G	7: 49,247,312 (GRCm39)	H2154R	probably damaging	Het
Nek10	A	G	14: 14,999,112 (GRCm38)	E1037G	possibly damaging	Het
Or1j13	T	C	2: 36,369,986 (GRCm39)	D52G	probably damaging	Het
Or52e4	A	G	7: 104,705,878 (GRCm39)	T142A	probably benign	Het
Or5k17	A	G	16: 58,746,286 (GRCm39)	V216A	probably benign	Het
Pitrm1	G	T	13: 6,625,128 (GRCm39)	V869F	probably benign	Het
Plekhm3	CCTGCTGCTGCTGCTGCTGCTGCTGC	CCTGCTGCTGCTGCTGCTGCTGC	1: 64,976,940 (GRCm39)		probably benign	Het
Prdx1	T	G	4: 116,550,997 (GRCm39)	I156S	probably benign	Het
Rbks	T	A	5: 31,823,096 (GRCm39)	T107S	probably damaging	Het
Ryr3	G	A	2: 112,506,219 (GRCm39)	R3468W	probably damaging	Het
Scn1a	C	T	2: 66,103,813 (GRCm39)	D1805N	probably damaging	Het
Sirpa	T	C	2: 129,457,568 (GRCm39)	V214A	probably benign	Het
Slc35c1	T	C	2: 92,289,225 (GRCm39)	N94D	probably benign	Het
Sorbs2	A	T	8: 46,248,407 (GRCm39)	K553*	probably null	Het
Tectb	C	G	19: 55,169,431 (GRCm39)		probably benign	Het
Thg1l	A	G	11: 45,842,392 (GRCm39)	V142A	probably benign	Het
Tiparp	T	A	3: 65,460,551 (GRCm39)	Y513*	probably null	Het
Tmc6	A	G	11: 117,663,646 (GRCm39)	V522A	probably benign	Het
Trrap	G	A	5: 144,780,179 (GRCm39)		probably null	Het
Tulp3	C	T	6: 128,304,601 (GRCm39)	V218I	probably benign	Het
Vmn1r38	T	A	6: 66,753,955 (GRCm39)	I54F	probably benign	Het
Vmn2r23	T	A	6: 123,719,147 (GRCm39)	Y833*	probably null	Het
Zfp810	A	T	9: 22,190,534 (GRCm39)	S125T	probably benign	Het

Other mutations in Trim39

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01458:Trim39	APN	17	36,574,855 (GRCm39)	splice site	probably benign
IGL01462:Trim39	APN	17	36,574,617 (GRCm39)	splice site	probably benign
IGL02243:Trim39	APN	17	36,571,276 (GRCm39)	missense	probably damaging	1.00
IGL03390:Trim39	APN	17	36,571,463 (GRCm39)	missense	probably damaging	0.99
barba	UTSW	17	36,579,746 (GRCm39)	missense	probably damaging	1.00
rossa	UTSW	17	36,571,807 (GRCm39)	missense	probably damaging	1.00
PIT4305001:Trim39	UTSW	17	36,579,862 (GRCm39)	missense	possibly damaging	0.93
R0458:Trim39	UTSW	17	36,572,404 (GRCm39)	missense	probably damaging	1.00
R0569:Trim39	UTSW	17	36,574,623 (GRCm39)	missense	probably benign	0.36
R1565:Trim39	UTSW	17	36,579,746 (GRCm39)	missense	probably damaging	1.00
R1769:Trim39	UTSW	17	36,574,832 (GRCm39)	missense	probably damaging	1.00
R1969:Trim39	UTSW	17	36,579,645 (GRCm39)	missense	probably benign	0.01
R2009:Trim39	UTSW	17	36,574,646 (GRCm39)	missense	possibly damaging	0.92
R5206:Trim39	UTSW	17	36,571,382 (GRCm39)	missense	probably damaging	1.00
R5443:Trim39	UTSW	17	36,571,645 (GRCm39)	missense	probably damaging	1.00
R6481:Trim39	UTSW	17	36,579,554 (GRCm39)	missense	probably benign	0.03
R7132:Trim39	UTSW	17	36,571,547 (GRCm39)	missense	probably benign	0.25
R7563:Trim39	UTSW	17	36,571,807 (GRCm39)	missense	probably damaging	1.00
R7739:Trim39	UTSW	17	36,571,396 (GRCm39)	missense	possibly damaging	0.50
R8433:Trim39	UTSW	17	36,571,597 (GRCm39)	missense	possibly damaging	0.87
R9200:Trim39	UTSW	17	36,579,667 (GRCm39)	missense	probably benign	0.04
R9468:Trim39	UTSW	17	36,571,492 (GRCm39)	missense	probably benign	0.10

Predicted Primers

Posted On

2015-02-05