Incidental Mutation 'R3437:Vmn2r16'
ID 267228
Institutional Source Beutler Lab
Gene Symbol Vmn2r16
Ensembl Gene ENSMUSG00000092080
Gene Name vomeronasal 2, receptor 16
Synonyms EG384220
MMRRC Submission 040655-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.154) question?
Stock # R3437 (G1)
Quality Score 225
Status Validated
Chromosome 5
Chromosomal Location 109478247-109512347 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 109478362 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Valine at position 39 (D39V)
Ref Sequence ENSEMBL: ENSMUSP00000127838 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000165180]
AlphaFold A0A3B2WCY4
Predicted Effect probably damaging
Transcript: ENSMUST00000165180
AA Change: D39V

PolyPhen 2 Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000127838
Gene: ENSMUSG00000092080
AA Change: D39V

DomainStartEndE-ValueType
signal peptide 1 24 N/A INTRINSIC
Pfam:ANF_receptor 76 425 2.3e-28 PFAM
Pfam:NCD3G 509 563 8.2e-19 PFAM
Pfam:7tm_3 596 831 3.5e-56 PFAM
Meta Mutation Damage Score 0.6467 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.2%
  • 20x: 94.6%
Validation Efficiency 100% (42/42)
Allele List at MGI
Other mutations in this stock
Total: 43 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
A2m T G 6: 121,616,253 (GRCm39) L127R probably null Het
Ambp T C 4: 63,067,721 (GRCm39) E163G probably benign Het
Amy1 G A 3: 113,349,658 (GRCm39) A504V probably damaging Het
Angptl3 A T 4: 98,921,540 (GRCm39) K219N probably benign Het
Atp6v1g1 A G 4: 63,468,255 (GRCm39) N86S probably benign Het
Avl9 T C 6: 56,713,612 (GRCm39) V290A probably benign Het
Bad A G 19: 6,919,799 (GRCm39) R37G probably benign Het
Bicra T C 7: 15,723,223 (GRCm39) D98G possibly damaging Het
Cfap251 A G 5: 123,392,435 (GRCm39) probably benign Het
Col4a4 G A 1: 82,474,889 (GRCm39) T650M unknown Het
Cyp11b2 T C 15: 74,727,298 (GRCm39) R128G probably benign Het
Dst T C 1: 34,229,303 (GRCm39) S1974P probably damaging Het
Fabp1 T C 6: 71,178,595 (GRCm39) L24P probably benign Het
Flnb T C 14: 7,942,057 (GRCm38) V2345A probably damaging Het
Gmnc G T 16: 26,779,217 (GRCm39) H221Q probably benign Het
Homer1 T C 13: 93,502,929 (GRCm39) probably benign Het
Kit A G 5: 75,806,565 (GRCm39) D690G probably damaging Het
Lama2 C T 10: 26,877,231 (GRCm39) E2652K probably benign Het
Mc3r C T 2: 172,091,588 (GRCm39) T270I probably benign Het
Mrgpra3 A C 7: 47,239,314 (GRCm39) L204W probably damaging Het
Mroh1 C T 15: 76,317,808 (GRCm39) T839I possibly damaging Het
Naip2 T A 13: 100,291,419 (GRCm39) H1173L probably benign Het
Optc T C 1: 133,825,617 (GRCm39) D303G probably damaging Het
Or2n1d A G 17: 38,646,323 (GRCm39) I92V probably damaging Het
Or5af1 A T 11: 58,722,150 (GRCm39) M57L probably damaging Het
P4ha3 C T 7: 99,934,831 (GRCm39) A31V possibly damaging Het
Plch2 A G 4: 155,075,470 (GRCm39) probably null Het
Plpp2 A T 10: 79,363,647 (GRCm39) probably null Het
Polq A T 16: 36,882,699 (GRCm39) N1342I probably damaging Het
Pter T A 2: 13,005,805 (GRCm39) L326H probably benign Het
Pwwp2a C T 11: 43,597,015 (GRCm39) Q452* probably null Het
Slc8a2 T G 7: 15,892,810 (GRCm39) V824G probably damaging Het
Slfn2 A T 11: 82,960,390 (GRCm39) H123L probably benign Het
Tmem132e A G 11: 82,335,156 (GRCm39) Y654C probably damaging Het
Trim14 C T 4: 46,523,739 (GRCm39) V100I possibly damaging Het
Tro G A X: 149,429,252 (GRCm39) probably benign Het
Uspl1 T A 5: 149,151,507 (GRCm39) probably benign Het
Uty A G Y: 1,158,336 (GRCm39) I522T probably benign Het
Vmn1r120 A C 7: 20,787,582 (GRCm39) L43W probably damaging Het
Washc4 T A 10: 83,405,866 (GRCm39) I454N probably benign Het
Wnt16 T C 6: 22,298,133 (GRCm39) V333A probably damaging Het
Ylpm1 T C 12: 85,096,644 (GRCm39) probably null Het
Zfy1 A T Y: 726,357 (GRCm39) D469E possibly damaging Het
Other mutations in Vmn2r16
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01116:Vmn2r16 APN 5 109,488,294 (GRCm39) missense probably damaging 1.00
IGL01374:Vmn2r16 APN 5 109,478,283 (GRCm39) missense probably benign 0.00
IGL01391:Vmn2r16 APN 5 109,511,627 (GRCm39) missense possibly damaging 0.50
IGL01419:Vmn2r16 APN 5 109,510,267 (GRCm39) splice site probably benign
IGL01634:Vmn2r16 APN 5 109,488,177 (GRCm39) missense probably benign 0.00
IGL01845:Vmn2r16 APN 5 109,511,762 (GRCm39) missense probably damaging 1.00
IGL01875:Vmn2r16 APN 5 109,478,277 (GRCm39) missense probably benign 0.01
IGL01910:Vmn2r16 APN 5 109,487,951 (GRCm39) missense probably damaging 1.00
IGL02217:Vmn2r16 APN 5 109,487,676 (GRCm39) missense probably damaging 0.98
IGL02327:Vmn2r16 APN 5 109,487,987 (GRCm39) missense probably benign 0.01
IGL02491:Vmn2r16 APN 5 109,487,703 (GRCm39) nonsense probably null
IGL02531:Vmn2r16 APN 5 109,488,134 (GRCm39) missense probably damaging 0.99
IGL02680:Vmn2r16 APN 5 109,487,948 (GRCm39) missense probably benign 0.44
IGL02884:Vmn2r16 APN 5 109,508,757 (GRCm39) missense possibly damaging 0.94
IGL03084:Vmn2r16 APN 5 109,478,292 (GRCm39) missense probably damaging 0.99
IGL03096:Vmn2r16 APN 5 109,487,751 (GRCm39) missense probably damaging 0.99
IGL03355:Vmn2r16 APN 5 109,511,580 (GRCm39) missense possibly damaging 0.74
R0280:Vmn2r16 UTSW 5 109,488,005 (GRCm39) missense possibly damaging 0.88
R0594:Vmn2r16 UTSW 5 109,511,762 (GRCm39) missense probably damaging 1.00
R1016:Vmn2r16 UTSW 5 109,487,754 (GRCm39) missense probably damaging 1.00
R1109:Vmn2r16 UTSW 5 109,487,652 (GRCm39) missense probably damaging 0.98
R1248:Vmn2r16 UTSW 5 109,508,643 (GRCm39) missense probably benign 0.10
R1626:Vmn2r16 UTSW 5 109,511,443 (GRCm39) missense probably damaging 1.00
R1909:Vmn2r16 UTSW 5 109,511,853 (GRCm39) missense probably benign 0.01
R1929:Vmn2r16 UTSW 5 109,487,124 (GRCm39) missense possibly damaging 0.92
R1982:Vmn2r16 UTSW 5 109,511,890 (GRCm39) missense probably benign 0.01
R3038:Vmn2r16 UTSW 5 109,487,199 (GRCm39) missense probably damaging 1.00
R3734:Vmn2r16 UTSW 5 109,478,280 (GRCm39) missense probably benign 0.11
R3820:Vmn2r16 UTSW 5 109,510,143 (GRCm39) missense probably benign 0.36
R3873:Vmn2r16 UTSW 5 109,488,177 (GRCm39) missense probably benign 0.33
R4165:Vmn2r16 UTSW 5 109,478,427 (GRCm39) missense possibly damaging 0.80
R4373:Vmn2r16 UTSW 5 109,511,667 (GRCm39) missense probably damaging 1.00
R4575:Vmn2r16 UTSW 5 109,511,665 (GRCm39) missense possibly damaging 0.81
R4576:Vmn2r16 UTSW 5 109,511,665 (GRCm39) missense possibly damaging 0.81
R4578:Vmn2r16 UTSW 5 109,511,665 (GRCm39) missense possibly damaging 0.81
R4637:Vmn2r16 UTSW 5 109,478,280 (GRCm39) missense probably benign 0.00
R4696:Vmn2r16 UTSW 5 109,487,168 (GRCm39) missense probably benign 0.01
R5026:Vmn2r16 UTSW 5 109,508,722 (GRCm39) nonsense probably null
R5180:Vmn2r16 UTSW 5 109,478,391 (GRCm39) missense probably benign 0.01
R5433:Vmn2r16 UTSW 5 109,511,708 (GRCm39) missense probably damaging 1.00
R5955:Vmn2r16 UTSW 5 109,511,613 (GRCm39) missense possibly damaging 0.78
R5958:Vmn2r16 UTSW 5 109,510,153 (GRCm39) missense possibly damaging 0.81
R6353:Vmn2r16 UTSW 5 109,488,119 (GRCm39) missense probably benign 0.33
R6389:Vmn2r16 UTSW 5 109,478,344 (GRCm39) missense probably benign 0.19
R6819:Vmn2r16 UTSW 5 109,488,412 (GRCm39) missense probably benign 0.04
R6994:Vmn2r16 UTSW 5 109,487,969 (GRCm39) missense probably damaging 1.00
R7061:Vmn2r16 UTSW 5 109,511,620 (GRCm39) missense probably damaging 0.99
R7063:Vmn2r16 UTSW 5 109,511,650 (GRCm39) missense probably damaging 1.00
R7220:Vmn2r16 UTSW 5 109,508,772 (GRCm39) missense probably damaging 0.97
R7268:Vmn2r16 UTSW 5 109,488,331 (GRCm39) nonsense probably null
R7420:Vmn2r16 UTSW 5 109,511,736 (GRCm39) missense probably damaging 0.96
R7591:Vmn2r16 UTSW 5 109,510,223 (GRCm39) missense probably damaging 0.99
R7644:Vmn2r16 UTSW 5 109,487,837 (GRCm39) missense probably damaging 1.00
R7939:Vmn2r16 UTSW 5 109,487,705 (GRCm39) missense possibly damaging 0.79
R7977:Vmn2r16 UTSW 5 109,488,015 (GRCm39) missense probably damaging 1.00
R7987:Vmn2r16 UTSW 5 109,488,015 (GRCm39) missense probably damaging 1.00
R8023:Vmn2r16 UTSW 5 109,488,272 (GRCm39) nonsense probably null
R8427:Vmn2r16 UTSW 5 109,488,138 (GRCm39) missense probably benign 0.03
R8436:Vmn2r16 UTSW 5 109,511,649 (GRCm39) missense probably damaging 1.00
R8475:Vmn2r16 UTSW 5 109,487,073 (GRCm39) missense probably benign 0.01
R8554:Vmn2r16 UTSW 5 109,511,997 (GRCm39) missense probably benign 0.13
R8771:Vmn2r16 UTSW 5 109,488,231 (GRCm39) missense probably benign 0.00
R8774:Vmn2r16 UTSW 5 109,488,231 (GRCm39) missense probably benign 0.00
R8774-TAIL:Vmn2r16 UTSW 5 109,488,231 (GRCm39) missense probably benign 0.00
R8775:Vmn2r16 UTSW 5 109,488,231 (GRCm39) missense probably benign 0.00
R8775-TAIL:Vmn2r16 UTSW 5 109,488,231 (GRCm39) missense probably benign 0.00
R8777:Vmn2r16 UTSW 5 109,488,231 (GRCm39) missense probably benign 0.00
R8777-TAIL:Vmn2r16 UTSW 5 109,488,231 (GRCm39) missense probably benign 0.00
R8825:Vmn2r16 UTSW 5 109,487,019 (GRCm39) missense probably benign 0.41
R8865:Vmn2r16 UTSW 5 109,487,910 (GRCm39) missense probably benign 0.33
R8900:Vmn2r16 UTSW 5 109,511,619 (GRCm39) missense probably benign 0.04
R9365:Vmn2r16 UTSW 5 109,488,064 (GRCm39) missense probably damaging 0.99
R9683:Vmn2r16 UTSW 5 109,511,677 (GRCm39) missense probably damaging 1.00
X0027:Vmn2r16 UTSW 5 109,487,175 (GRCm39) missense probably damaging 1.00
Z1088:Vmn2r16 UTSW 5 109,511,779 (GRCm39) frame shift probably null
Z1088:Vmn2r16 UTSW 5 109,488,381 (GRCm39) missense probably benign 0.03
Z1177:Vmn2r16 UTSW 5 109,487,864 (GRCm39) missense possibly damaging 0.79
Predicted Primers PCR Primer
(F):5'- GGATTTTCACACAGCAATAGCC -3'
(R):5'- CCTAATGTTACCTGGGAAGAACAG -3'

Sequencing Primer
(F):5'- GCCTTAAAACAGACACATGTAAATG -3'
(R):5'- GAACAGGACATGTACACAGTTAC -3'
Posted On 2015-02-18