Mutagenetix > Incidental Mutation

Incidental Mutation 'R3622:Oma1'

268661

Institutional Source

Beutler Lab

Gene Symbol

Oma1

Ensembl Gene

ENSMUSG00000035069

Gene Name

OMA1 zinc metallopeptidase

Synonyms

2010001O09Rik

MMRRC Submission

040677-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R3622 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

103171009-103229065 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 103223288 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Threonine at position 491 (I491T)

Ref Sequence

ENSEMBL: ENSMUSP00000045269 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000035780]

AlphaFold

Q9D8H7

Predicted Effect

probably benign
Transcript: ENSMUST00000035780
AA Change: I491T

PolyPhen 2 Score 0.017 (Sensitivity: 0.95; Specificity: 0.80)

SMART Domains

Protein: ENSMUSP00000045269
Gene: ENSMUSG00000035069
AA Change: I491T

Domain	Start	End	E-Value	Type
low complexity region	113	125	N/A	INTRINSIC
low complexity region	138	158	N/A	INTRINSIC
transmembrane domain	191	213	N/A	INTRINSIC
Pfam:Peptidase_M48	259	449	2.3e-31	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133178

Meta Mutation Damage Score

0.0615

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 97.2%
20x: 95.1%

Validation Efficiency

100% (42/42)

MGI Phenotype

PHENOTYPE: Mice homozygous for a targeted allele exhibit increased susceptibility to diet-induced obesity and defective thermogenesis. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 42 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca15	T	A	7: 119,950,036 (GRCm39)	Y503*	probably null	Het
Akap9	C	A	5: 4,026,235 (GRCm39)	Q1297K	possibly damaging	Het
Dffb	T	C	4: 154,049,976 (GRCm39)	T296A	probably damaging	Het
Dpf1	G	A	7: 29,015,631 (GRCm39)		probably null	Het
Elp1	A	T	4: 56,759,925 (GRCm39)		probably null	Het
Grid2ip	T	C	5: 143,371,774 (GRCm39)	S666P	probably damaging	Het
Gucy2e	T	A	11: 69,115,877 (GRCm39)	E835V	probably damaging	Het
Hdac5	G	A	11: 102,086,644 (GRCm39)	P120S	probably benign	Het
Htr1d	T	C	4: 136,170,815 (GRCm39)	I348T	probably damaging	Het
Hyal4	A	T	6: 24,765,737 (GRCm39)	S364C	probably damaging	Het
Igkv1-133	A	T	6: 67,701,944 (GRCm39)	Q16L	probably benign	Het
Itga10	C	T	3: 96,559,054 (GRCm39)		probably benign	Het
Met	A	T	6: 17,549,085 (GRCm39)	D979V	probably damaging	Het
Mga	A	G	2: 119,772,245 (GRCm39)	T1702A	probably damaging	Het
Midn	A	G	10: 79,986,144 (GRCm39)	D78G	probably benign	Het
Muc5b	T	C	7: 141,405,595 (GRCm39)		probably benign	Het
Or1e30	A	G	11: 73,678,567 (GRCm39)	T268A	probably benign	Het
Or5ak24	C	T	2: 85,260,837 (GRCm39)	C112Y	probably benign	Het
Or5b107	T	A	19: 13,143,020 (GRCm39)	M214K	probably benign	Het
Or8b48	A	G	9: 38,492,792 (GRCm39)	Y73C	probably damaging	Het
Pbld2	T	C	10: 62,897,470 (GRCm39)	L57P	probably damaging	Het
Phka2	T	A	X: 159,327,291 (GRCm39)	Y334*	probably null	Het
Plin4	G	T	17: 56,411,112 (GRCm39)	T973K	possibly damaging	Het
R3hdm4	C	T	10: 79,748,515 (GRCm39)	R143H	possibly damaging	Het
Rps18	G	C	17: 34,171,247 (GRCm39)		probably null	Het
Samd9l	A	T	6: 3,374,032 (GRCm39)	C1076*	probably null	Het
Scml4	T	C	10: 42,806,607 (GRCm39)		probably benign	Het
Slc16a10	A	G	10: 40,017,890 (GRCm39)	V48A	probably benign	Het
Slc6a5	T	C	7: 49,567,371 (GRCm39)	V275A	probably benign	Het
Smad9	C	T	3: 54,696,705 (GRCm39)	R257W	probably damaging	Het
Snrpb	C	A	2: 130,017,299 (GRCm39)	R73L	probably null	Het
Srsf9	C	T	5: 115,468,571 (GRCm39)	A69V	probably damaging	Het
Stfa2	A	G	16: 36,224,433 (GRCm39)	Y90H	probably damaging	Het
Tgm6	T	A	2: 129,993,681 (GRCm39)	V640E	possibly damaging	Het
Tnrc6c	C	T	11: 117,640,451 (GRCm39)	R1414C	probably damaging	Het
Tyk2	A	T	9: 21,038,606 (GRCm39)	C8S	probably damaging	Het
Upp2	G	A	2: 58,680,128 (GRCm39)	R300Q	possibly damaging	Het
Utp20	A	G	10: 88,593,855 (GRCm39)		probably benign	Het
Veph1	C	T	3: 66,122,858 (GRCm39)	V224I	probably benign	Het
Vmn1r30	A	T	6: 58,412,437 (GRCm39)	F132I	probably benign	Het
Vmn2r116	A	G	17: 23,605,025 (GRCm39)	S113G	probably benign	Het
Vps53	A	C	11: 76,008,609 (GRCm39)	V237G	probably benign	Het

Other mutations in Oma1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00340:Oma1	APN	4	103,176,565 (GRCm39)	missense	probably benign	0.22
IGL02317:Oma1	APN	4	103,176,234 (GRCm39)	utr 5 prime	probably benign
IGL02483:Oma1	APN	4	103,182,309 (GRCm39)	nonsense	probably null
R0032:Oma1	UTSW	4	103,223,209 (GRCm39)	missense	possibly damaging	0.93
R0032:Oma1	UTSW	4	103,223,209 (GRCm39)	missense	possibly damaging	0.93
R0386:Oma1	UTSW	4	103,182,398 (GRCm39)	splice site	probably benign
R0699:Oma1	UTSW	4	103,210,792 (GRCm39)	missense	probably damaging	1.00
R0749:Oma1	UTSW	4	103,182,496 (GRCm39)	nonsense	probably null
R1809:Oma1	UTSW	4	103,182,374 (GRCm39)	missense	probably damaging	1.00
R1990:Oma1	UTSW	4	103,178,971 (GRCm39)	missense	probably damaging	0.99
R4532:Oma1	UTSW	4	103,176,571 (GRCm39)	missense	probably benign	0.22
R4916:Oma1	UTSW	4	103,176,727 (GRCm39)	critical splice donor site	probably null
R8069:Oma1	UTSW	4	103,176,232 (GRCm39)	start gained	probably benign
R8290:Oma1	UTSW	4	103,176,671 (GRCm39)	missense	probably damaging	1.00
R8411:Oma1	UTSW	4	103,186,113 (GRCm39)	nonsense	probably null
R8896:Oma1	UTSW	4	103,210,829 (GRCm39)	missense	probably damaging	1.00
R9149:Oma1	UTSW	4	103,182,214 (GRCm39)	critical splice acceptor site	probably null
R9605:Oma1	UTSW	4	103,210,726 (GRCm39)	missense	possibly damaging	0.91

Predicted Primers

PCR Primer
(F):5'- GCCGACTTCCATTTAAATGCACAG -3'
(R):5'- GTGACTTGGCCTTTGAACATTC -3'

Sequencing Primer
(F):5'- GCACAGAAATGTTCTTTTACTTTTGG -3'
(R):5'- GAAAAGGTCCACTGTGCT -3'

Posted On

2015-02-19