Incidental Mutation 'R3623:Vmn2r24'
ID 268717
Institutional Source Beutler Lab
Gene Symbol Vmn2r24
Ensembl Gene ENSMUSG00000072780
Gene Name vomeronasal 2, receptor 24
Synonyms EG243628
Accession Numbers
Essential gene? Probably non essential (E-score: 0.055) question?
Stock # R3623 (G1)
Quality Score 225
Status Validated
Chromosome 6
Chromosomal Location 123755930-123793239 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 123792997 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Arginine to Glycine at position 775 (R775G)
Ref Sequence ENSEMBL: ENSMUSP00000074602 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000075095]
AlphaFold D3YUI0
Predicted Effect probably damaging
Transcript: ENSMUST00000075095
AA Change: R775G

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000074602
Gene: ENSMUSG00000072780
AA Change: R775G

DomainStartEndE-ValueType
signal peptide 1 22 N/A INTRINSIC
Pfam:ANF_receptor 82 469 1.6e-32 PFAM
Pfam:NCD3G 518 571 1.1e-22 PFAM
Pfam:7tm_3 602 839 1.1e-54 PFAM
Meta Mutation Damage Score 0.6467 question?
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.5%
  • 10x: 97.1%
  • 20x: 94.6%
Validation Efficiency 100% (69/69)
Allele List at MGI
Other mutations in this stock
Total: 71 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adcy1 A G 11: 7,080,348 (GRCm39) T364A probably benign Het
Adpgk G A 9: 59,221,036 (GRCm39) V281I probably benign Het
Akap9 C A 5: 4,026,235 (GRCm39) Q1297K possibly damaging Het
Ankrd13d T C 19: 4,331,968 (GRCm39) E110G probably damaging Het
Ankrd53 A G 6: 83,740,244 (GRCm39) E104G possibly damaging Het
Becn2 T C 1: 175,748,197 (GRCm39) C88R possibly damaging Het
Bscl2 T A 19: 8,818,514 (GRCm39) C40S probably benign Het
Btaf1 A G 19: 36,958,486 (GRCm39) T668A probably benign Het
Camk2g G A 14: 20,805,775 (GRCm39) probably benign Het
Cd109 A T 9: 78,574,639 (GRCm39) D541V probably damaging Het
Cep135 G A 5: 76,772,586 (GRCm39) G657D probably benign Het
Coch A G 12: 51,649,609 (GRCm39) I307V probably benign Het
D17H6S53E A G 17: 35,346,512 (GRCm39) E141G probably benign Het
Ddias T C 7: 92,508,800 (GRCm39) T372A probably benign Het
Dffb T C 4: 154,049,976 (GRCm39) T296A probably damaging Het
Dock8 A G 19: 25,057,241 (GRCm39) Q216R probably benign Het
Ep400 T C 5: 110,867,102 (GRCm39) Y1014C unknown Het
Ephx1 A G 1: 180,817,498 (GRCm39) I391T probably benign Het
Fcgbp A G 7: 27,800,701 (GRCm39) Y1249C probably damaging Het
Gm5592 T C 7: 40,807,052 (GRCm39) probably benign Het
Gm7964 A G 7: 83,405,629 (GRCm39) N149S probably benign Het
Greb1l T A 18: 10,542,380 (GRCm39) I1325N probably damaging Het
H2-T3 T C 17: 36,500,957 (GRCm39) T20A possibly damaging Het
Htr1d T C 4: 136,170,815 (GRCm39) I348T probably damaging Het
Hyal4 A T 6: 24,765,737 (GRCm39) S364C probably damaging Het
Igkv1-133 A T 6: 67,701,944 (GRCm39) Q16L probably benign Het
Irs2 C T 8: 11,057,643 (GRCm39) G263D probably damaging Het
Itga10 C T 3: 96,559,054 (GRCm39) probably benign Het
Kmt2a A G 9: 44,760,263 (GRCm39) Y529H probably damaging Het
Mdfic T A 6: 15,770,319 (GRCm39) N108K probably damaging Het
Met A T 6: 17,549,085 (GRCm39) D979V probably damaging Het
Mettl21e T A 1: 44,245,857 (GRCm39) I130F probably damaging Het
Mlh3 C T 12: 85,315,169 (GRCm39) C339Y probably damaging Het
Mog T C 17: 37,323,338 (GRCm39) H200R possibly damaging Het
Msrb3 C T 10: 120,620,103 (GRCm39) R72H probably damaging Het
Mtmr11 A G 3: 96,072,583 (GRCm39) H324R probably damaging Het
Myh7 T C 14: 55,210,838 (GRCm39) E1693G probably damaging Het
Nadk2 T A 15: 9,084,303 (GRCm39) W139R probably damaging Het
Ndufa9 A T 6: 126,821,362 (GRCm39) M76K possibly damaging Het
Nr1i2 A G 16: 38,086,269 (GRCm39) probably benign Het
Nsd3 A G 8: 26,152,835 (GRCm39) T392A probably damaging Het
Or14a259 A G 7: 86,013,308 (GRCm39) F79S probably benign Het
Or52d3 T C 7: 104,229,149 (GRCm39) S99P probably damaging Het
P2ry2 A T 7: 100,647,706 (GRCm39) S200T probably benign Het
Pcnt T A 10: 76,269,584 (GRCm39) E228V probably benign Het
Phka2 T A X: 159,327,291 (GRCm39) Y334* probably null Het
Pkhd1l1 A T 15: 44,390,265 (GRCm39) K1460N probably damaging Het
Rpl7a-ps3 G A 15: 36,308,429 (GRCm39) noncoding transcript Het
Rspry1 A G 8: 95,376,405 (GRCm39) D309G probably damaging Het
Scap A G 9: 110,209,271 (GRCm39) Y648C probably damaging Het
Sgcz T C 8: 38,420,201 (GRCm39) E17G probably damaging Het
Slc17a5 A T 9: 78,445,556 (GRCm39) V433D probably damaging Het
Smad9 C T 3: 54,696,705 (GRCm39) R257W probably damaging Het
Srcap T C 7: 127,141,319 (GRCm39) S1639P probably damaging Het
Strn3 T C 12: 51,707,999 (GRCm39) Y132C possibly damaging Het
Tas2r110 A T 6: 132,845,433 (GRCm39) M155L probably benign Het
Tasor2 T C 13: 3,645,556 (GRCm39) T98A probably benign Het
Thbd A G 2: 148,248,893 (GRCm39) V325A probably damaging Het
Trpd52l3 T A 19: 29,981,333 (GRCm39) C29* probably null Het
Trpm1 A G 7: 63,894,601 (GRCm39) Y951C probably damaging Het
Ube3a T A 7: 58,921,860 (GRCm39) N77K probably damaging Het
Upp2 G A 2: 58,680,128 (GRCm39) R300Q possibly damaging Het
Usp35 T C 7: 96,961,827 (GRCm39) H533R probably damaging Het
Veph1 C T 3: 66,122,858 (GRCm39) V224I probably benign Het
Vmn1r30 A T 6: 58,412,437 (GRCm39) F132I probably benign Het
Vps13c T A 9: 67,883,189 (GRCm39) probably null Het
Vps37c T A 19: 10,683,569 (GRCm39) probably null Het
Zap70 C T 1: 36,818,216 (GRCm39) T301I probably benign Het
Zfp341 A G 2: 154,466,801 (GRCm39) K57E probably damaging Het
Zfp60 T A 7: 27,448,753 (GRCm39) F474I probably benign Het
Zfp786 T C 6: 47,798,357 (GRCm39) N194D probably benign Het
Other mutations in Vmn2r24
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00954:Vmn2r24 APN 6 123,792,596 (GRCm39) missense probably damaging 1.00
IGL01382:Vmn2r24 APN 6 123,763,938 (GRCm39) missense possibly damaging 0.62
IGL01592:Vmn2r24 APN 6 123,764,445 (GRCm39) missense probably benign 0.30
IGL01754:Vmn2r24 APN 6 123,781,120 (GRCm39) missense probably damaging 1.00
IGL01939:Vmn2r24 APN 6 123,764,404 (GRCm39) missense probably benign
IGL02140:Vmn2r24 APN 6 123,757,631 (GRCm39) missense probably damaging 0.98
IGL02272:Vmn2r24 APN 6 123,763,843 (GRCm39) missense possibly damaging 0.94
IGL02568:Vmn2r24 APN 6 123,792,812 (GRCm39) missense probably benign 0.36
IGL02748:Vmn2r24 APN 6 123,793,057 (GRCm39) missense possibly damaging 0.90
IGL03022:Vmn2r24 APN 6 123,755,967 (GRCm39) missense probably damaging 0.99
IGL03343:Vmn2r24 APN 6 123,793,070 (GRCm39) missense probably damaging 1.00
R0357:Vmn2r24 UTSW 6 123,792,369 (GRCm39) frame shift probably null
R0453:Vmn2r24 UTSW 6 123,757,350 (GRCm39) critical splice acceptor site probably null
R0538:Vmn2r24 UTSW 6 123,793,012 (GRCm39) missense probably benign 0.32
R0607:Vmn2r24 UTSW 6 123,763,893 (GRCm39) missense probably benign
R1381:Vmn2r24 UTSW 6 123,763,692 (GRCm39) missense probably damaging 1.00
R1589:Vmn2r24 UTSW 6 123,783,479 (GRCm39) splice site probably benign
R1848:Vmn2r24 UTSW 6 123,793,183 (GRCm39) missense probably damaging 1.00
R2035:Vmn2r24 UTSW 6 123,793,019 (GRCm39) missense probably damaging 1.00
R2077:Vmn2r24 UTSW 6 123,792,358 (GRCm39) missense probably damaging 1.00
R2122:Vmn2r24 UTSW 6 123,792,353 (GRCm39) missense possibly damaging 0.81
R2145:Vmn2r24 UTSW 6 123,755,972 (GRCm39) missense probably benign
R2483:Vmn2r24 UTSW 6 123,792,997 (GRCm39) missense probably damaging 1.00
R2512:Vmn2r24 UTSW 6 123,763,985 (GRCm39) missense probably benign 0.01
R3001:Vmn2r24 UTSW 6 123,781,231 (GRCm39) missense probably benign 0.00
R3002:Vmn2r24 UTSW 6 123,781,231 (GRCm39) missense probably benign 0.00
R3236:Vmn2r24 UTSW 6 123,755,984 (GRCm39) nonsense probably null
R3624:Vmn2r24 UTSW 6 123,792,997 (GRCm39) missense probably damaging 1.00
R3835:Vmn2r24 UTSW 6 123,764,412 (GRCm39) missense probably benign 0.33
R4074:Vmn2r24 UTSW 6 123,764,374 (GRCm39) missense possibly damaging 0.92
R4075:Vmn2r24 UTSW 6 123,764,374 (GRCm39) missense possibly damaging 0.92
R4812:Vmn2r24 UTSW 6 123,756,144 (GRCm39) missense probably benign 0.00
R4825:Vmn2r24 UTSW 6 123,792,739 (GRCm39) missense probably benign 0.02
R5351:Vmn2r24 UTSW 6 123,793,223 (GRCm39) missense possibly damaging 0.80
R5665:Vmn2r24 UTSW 6 123,763,938 (GRCm39) missense possibly damaging 0.62
R5790:Vmn2r24 UTSW 6 123,792,499 (GRCm39) missense probably benign
R5808:Vmn2r24 UTSW 6 123,792,597 (GRCm39) nonsense probably null
R5879:Vmn2r24 UTSW 6 123,764,226 (GRCm39) missense possibly damaging 0.89
R5923:Vmn2r24 UTSW 6 123,792,751 (GRCm39) missense probably damaging 0.96
R5969:Vmn2r24 UTSW 6 123,755,981 (GRCm39) missense probably benign 0.00
R6050:Vmn2r24 UTSW 6 123,792,691 (GRCm39) missense probably damaging 1.00
R6171:Vmn2r24 UTSW 6 123,764,205 (GRCm39) missense probably damaging 0.98
R6174:Vmn2r24 UTSW 6 123,793,236 (GRCm39) missense probably benign 0.00
R6356:Vmn2r24 UTSW 6 123,783,368 (GRCm39) missense possibly damaging 0.93
R6562:Vmn2r24 UTSW 6 123,757,386 (GRCm39) missense probably benign 0.01
R6563:Vmn2r24 UTSW 6 123,781,137 (GRCm39) missense possibly damaging 0.86
R6584:Vmn2r24 UTSW 6 123,792,764 (GRCm39) missense possibly damaging 0.53
R6630:Vmn2r24 UTSW 6 123,763,981 (GRCm39) missense probably benign 0.00
R6803:Vmn2r24 UTSW 6 123,755,960 (GRCm39) missense possibly damaging 0.64
R6864:Vmn2r24 UTSW 6 123,756,117 (GRCm39) missense possibly damaging 0.89
R7252:Vmn2r24 UTSW 6 123,764,191 (GRCm39) missense possibly damaging 0.90
R7369:Vmn2r24 UTSW 6 123,792,638 (GRCm39) missense probably damaging 0.99
R7646:Vmn2r24 UTSW 6 123,793,169 (GRCm39) missense probably benign 0.20
R7799:Vmn2r24 UTSW 6 123,757,422 (GRCm39) missense probably benign 0.00
R7803:Vmn2r24 UTSW 6 123,757,438 (GRCm39) missense probably benign 0.00
R7959:Vmn2r24 UTSW 6 123,755,949 (GRCm39) missense possibly damaging 0.86
R8215:Vmn2r24 UTSW 6 123,756,077 (GRCm39) missense probably benign 0.10
R8796:Vmn2r24 UTSW 6 123,757,500 (GRCm39) missense probably benign
R9172:Vmn2r24 UTSW 6 123,783,432 (GRCm39) missense probably damaging 1.00
R9300:Vmn2r24 UTSW 6 123,793,030 (GRCm39) missense possibly damaging 0.46
R9369:Vmn2r24 UTSW 6 123,792,357 (GRCm39) missense probably damaging 1.00
R9375:Vmn2r24 UTSW 6 123,792,542 (GRCm39) missense probably damaging 1.00
R9523:Vmn2r24 UTSW 6 123,763,950 (GRCm39) missense possibly damaging 0.89
R9546:Vmn2r24 UTSW 6 123,764,266 (GRCm39) missense probably damaging 0.98
RF006:Vmn2r24 UTSW 6 123,783,378 (GRCm39) missense probably damaging 1.00
RF016:Vmn2r24 UTSW 6 123,781,174 (GRCm39) missense probably benign 0.04
X0023:Vmn2r24 UTSW 6 123,764,359 (GRCm39) missense probably damaging 0.99
Z1088:Vmn2r24 UTSW 6 123,781,155 (GRCm39) missense probably benign 0.00
Z1177:Vmn2r24 UTSW 6 123,763,719 (GRCm39) missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- TGGTTCCATCATTCAAGTGTGC -3'
(R):5'- GTCAGCTGACCTCAGTAGAATC -3'

Sequencing Primer
(F):5'- CATCATTCAAGTGTGCATCTGTG -3'
(R):5'- CCTCAGTAGAATCACATAGCATTTGG -3'
Posted On 2015-02-19