Mutagenetix > Incidental Mutation

Incidental Mutation 'R3612:Rprd2'

269250

Institutional Source

Beutler Lab

Gene Symbol

Rprd2

Ensembl Gene

ENSMUSG00000028106

Gene Name

regulation of nuclear pre-mRNA domain containing 2

Synonyms

2810036A19Rik, 6720469I21Rik, 4930535B03Rik

MMRRC Submission

040672-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.733) question?

Stock #

R3612 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

95667653-95726175 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 95671464 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Proline to Leucine at position 1313 (P1313L)

Ref Sequence

ENSEMBL: ENSMUSP00000088297 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000090791] [ENSMUST00000197501]

AlphaFold

Q6NXI6

Predicted Effect

probably damaging
Transcript: ENSMUST00000090791
AA Change: P1313L

PolyPhen 2 Score 0.977 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000088297
Gene: ENSMUSG00000028106
AA Change: P1313L

Domain	Start	End	E-Value	Type
RPR	26	146	3.6e-29	SMART
Pfam:CREPT	210	351	9.3e-11	PFAM
low complexity region	431	465	N/A	INTRINSIC
low complexity region	576	591	N/A	INTRINSIC
low complexity region	612	633	N/A	INTRINSIC
low complexity region	670	686	N/A	INTRINSIC
low complexity region	777	793	N/A	INTRINSIC
low complexity region	1159	1179	N/A	INTRINSIC
low complexity region	1195	1208	N/A	INTRINSIC
low complexity region	1230	1238	N/A	INTRINSIC
low complexity region	1272	1295	N/A	INTRINSIC
low complexity region	1300	1323	N/A	INTRINSIC
low complexity region	1373	1409	N/A	INTRINSIC
low complexity region	1446	1467	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000197501

Predicted Effect

possibly damaging
Transcript: ENSMUST00000200164
AA Change: P1229L

PolyPhen 2 Score 0.673 (Sensitivity: 0.86; Specificity: 0.92)

Meta Mutation Damage Score

0.0639

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 97.0%
20x: 94.2%

Validation Efficiency

100% (31/31)

Allele List at MGI

Other mutations in this stock

Total: 29 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aacs	T	C	5: 125,580,251 (GRCm39)	V192A	probably damaging	Het
Acsm2	G	C	7: 119,190,553 (GRCm39)	V90L	probably damaging	Het
Adam5	T	C	8: 25,308,105 (GRCm39)		probably benign	Het
Ankrd12	A	T	17: 66,290,542 (GRCm39)	D1630E	probably benign	Het
Ccdc88c	A	T	12: 100,905,332 (GRCm39)	I1085N	probably damaging	Het
Cdc42bpb	A	G	12: 111,270,256 (GRCm39)		probably benign	Het
Cdh19	A	T	1: 110,821,026 (GRCm39)	C571S	probably damaging	Het
Cep290	T	A	10: 100,377,443 (GRCm39)	L1491*	probably null	Het
Cherp	G	A	8: 73,215,840 (GRCm39)		probably benign	Het
Diaph3	T	C	14: 87,274,893 (GRCm39)	S188G	probably null	Het
Ech1	C	T	7: 28,529,668 (GRCm39)	R34C	probably damaging	Het
Erc2	T	C	14: 27,499,134 (GRCm39)	S337P	possibly damaging	Het
Fabp3	C	T	4: 130,206,180 (GRCm39)	T57I	probably benign	Het
Fah	A	G	7: 84,234,498 (GRCm39)	V412A	probably damaging	Het
Gatc	T	A	5: 115,473,545 (GRCm39)	E131D	probably benign	Het
Glrb	A	G	3: 80,769,337 (GRCm39)	V130A	possibly damaging	Het
Gm4782	T	A	6: 50,585,610 (GRCm39)		probably null	Het
Klhl1	C	T	14: 96,619,206 (GRCm39)		probably null	Het
Mslnl	G	A	17: 25,961,908 (GRCm39)	V128M	probably damaging	Het
Myo15a	G	C	11: 60,368,505 (GRCm39)	D422H	probably damaging	Het
Ncapd3	T	A	9: 26,961,653 (GRCm39)	H360Q	probably damaging	Het
Or1e22	T	C	11: 73,376,766 (GRCm39)	R295G	probably benign	Het
Ppargc1b	T	C	18: 61,443,627 (GRCm39)	N528S	probably benign	Het
Slc12a7	C	A	13: 73,958,042 (GRCm39)	D955E	probably benign	Het
Slc9a2	G	A	1: 40,758,218 (GRCm39)		probably null	Het
Tex24	T	A	8: 27,835,201 (GRCm39)	V243D	probably benign	Het
Vmn2r17	A	G	5: 109,577,463 (GRCm39)	T505A	probably benign	Het
Vps37a	T	C	8: 40,997,977 (GRCm39)		probably benign	Het
Zmynd19	A	G	2: 24,841,492 (GRCm39)	Y20C	probably damaging	Het

Other mutations in Rprd2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00766:Rprd2	APN	3	95,672,691 (GRCm39)	missense	possibly damaging	0.95
IGL00773:Rprd2	APN	3	95,672,421 (GRCm39)	missense	probably damaging	1.00
IGL00792:Rprd2	APN	3	95,692,416 (GRCm39)	missense	probably benign	0.05
IGL01022:Rprd2	APN	3	95,671,066 (GRCm39)	nonsense	probably null
IGL01121:Rprd2	APN	3	95,683,862 (GRCm39)	missense	probably damaging	1.00
IGL01299:Rprd2	APN	3	95,683,859 (GRCm39)	missense	probably damaging	1.00
IGL01387:Rprd2	APN	3	95,672,631 (GRCm39)	missense	probably benign
IGL01414:Rprd2	APN	3	95,672,837 (GRCm39)	missense	probably damaging	1.00
IGL02283:Rprd2	APN	3	95,672,815 (GRCm39)	missense	probably damaging	0.98
IGL02336:Rprd2	APN	3	95,694,622 (GRCm39)	missense	probably benign	0.17
R0131:Rprd2	UTSW	3	95,681,673 (GRCm39)	missense	probably damaging	1.00
R0131:Rprd2	UTSW	3	95,681,673 (GRCm39)	missense	probably damaging	1.00
R0132:Rprd2	UTSW	3	95,681,673 (GRCm39)	missense	probably damaging	1.00
R0574:Rprd2	UTSW	3	95,681,669 (GRCm39)	missense	possibly damaging	0.58
R0718:Rprd2	UTSW	3	95,673,699 (GRCm39)	missense	probably benign	0.30
R0847:Rprd2	UTSW	3	95,672,725 (GRCm39)	missense	probably benign	0.00
R0942:Rprd2	UTSW	3	95,672,730 (GRCm39)	missense	probably damaging	1.00
R0943:Rprd2	UTSW	3	95,691,559 (GRCm39)	missense	possibly damaging	0.88
R0980:Rprd2	UTSW	3	95,673,216 (GRCm39)	missense	probably damaging	1.00
R1448:Rprd2	UTSW	3	95,725,888 (GRCm39)	missense	possibly damaging	0.57
R1542:Rprd2	UTSW	3	95,672,988 (GRCm39)	missense	possibly damaging	0.69
R1577:Rprd2	UTSW	3	95,672,047 (GRCm39)	missense	probably damaging	1.00
R1598:Rprd2	UTSW	3	95,726,051 (GRCm39)	unclassified	probably benign
R1640:Rprd2	UTSW	3	95,671,059 (GRCm39)	unclassified	probably benign
R1670:Rprd2	UTSW	3	95,672,115 (GRCm39)	missense	probably damaging	1.00
R2430:Rprd2	UTSW	3	95,672,107 (GRCm39)	nonsense	probably null
R2966:Rprd2	UTSW	3	95,673,745 (GRCm39)	splice site	probably null
R3712:Rprd2	UTSW	3	95,671,872 (GRCm39)	missense	probably damaging	0.97
R3890:Rprd2	UTSW	3	95,672,536 (GRCm39)	missense	probably damaging	1.00
R4777:Rprd2	UTSW	3	95,694,686 (GRCm39)	missense	probably benign	0.41
R4783:Rprd2	UTSW	3	95,681,645 (GRCm39)	missense	probably benign	0.03
R4832:Rprd2	UTSW	3	95,681,483 (GRCm39)	missense	probably damaging	1.00
R4928:Rprd2	UTSW	3	95,671,849 (GRCm39)	missense	probably damaging	1.00
R4976:Rprd2	UTSW	3	95,673,661 (GRCm39)	missense	probably damaging	1.00
R4989:Rprd2	UTSW	3	95,672,632 (GRCm39)	missense	probably benign	0.03
R5134:Rprd2	UTSW	3	95,672,632 (GRCm39)	missense	probably benign	0.03
R5244:Rprd2	UTSW	3	95,697,494 (GRCm39)	missense	possibly damaging	0.80
R5314:Rprd2	UTSW	3	95,671,401 (GRCm39)	missense	possibly damaging	0.53
R5579:Rprd2	UTSW	3	95,692,371 (GRCm39)	missense	probably damaging	1.00
R5954:Rprd2	UTSW	3	95,672,175 (GRCm39)	missense	probably damaging	1.00
R6016:Rprd2	UTSW	3	95,694,685 (GRCm39)	missense	probably damaging	0.97
R6332:Rprd2	UTSW	3	95,687,753 (GRCm39)	missense	probably damaging	0.99
R6403:Rprd2	UTSW	3	95,673,399 (GRCm39)	missense	possibly damaging	0.77
R6415:Rprd2	UTSW	3	95,681,531 (GRCm39)	missense	probably benign	0.00
R7064:Rprd2	UTSW	3	95,672,328 (GRCm39)	missense	probably damaging	1.00
R7313:Rprd2	UTSW	3	95,684,022 (GRCm39)	missense	probably damaging	1.00
R7496:Rprd2	UTSW	3	95,673,087 (GRCm39)	missense	probably damaging	1.00
R7535:Rprd2	UTSW	3	95,683,899 (GRCm39)	missense	probably damaging	0.96
R8716:Rprd2	UTSW	3	95,684,105 (GRCm39)	missense	probably damaging	1.00
R8822:Rprd2	UTSW	3	95,691,613 (GRCm39)	missense	probably damaging	1.00
R8891:Rprd2	UTSW	3	95,671,367 (GRCm39)	missense	possibly damaging	0.85
R8922:Rprd2	UTSW	3	95,687,896 (GRCm39)	missense	probably damaging	0.99
R9030:Rprd2	UTSW	3	95,691,622 (GRCm39)	missense	probably benign	0.15
R9623:Rprd2	UTSW	3	95,679,505 (GRCm39)	missense	probably benign	0.30
RF034:Rprd2	UTSW	3	95,673,632 (GRCm39)	small deletion	probably benign
RF056:Rprd2	UTSW	3	95,673,631 (GRCm39)	small deletion	probably benign

Predicted Primers

PCR Primer
(F):5'- CGTGAACGGTTAAGACCAGG -3'
(R):5'- GTGGTATCTTCTCTCGAGAGGC -3'

Sequencing Primer
(F):5'- TTAAGACCAGGGCCATTGAGGTC -3'
(R):5'- GAGAGGCACCCACTCATCTG -3'

Posted On

2015-02-19