Mutagenetix > Incidental Mutation

Incidental Mutation 'R3624:Sgcz'

269326

Institutional Source

Beutler Lab

Gene Symbol

Sgcz

Ensembl Gene

ENSMUSG00000039539

Gene Name

sarcoglycan zeta

Synonyms

C230085N17Rik

MMRRC Submission

040678-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.074) question?

Stock #

R3624 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

37989452-39128662 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 38420201 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 17 (E17G)

Ref Sequence

ENSEMBL: ENSMUSP00000117250 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000118896] [ENSMUST00000135764]

AlphaFold

Q8BX51

Predicted Effect

possibly damaging
Transcript: ENSMUST00000118896
AA Change: E17G

PolyPhen 2 Score 0.938 (Sensitivity: 0.80; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000113912
Gene: ENSMUSG00000039539
AA Change: E17G

Domain	Start	End	E-Value	Type
Pfam:Sarcoglycan_1	38	298	4.7e-92	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000135764
AA Change: E17G

PolyPhen 2 Score 0.964 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000117250
Gene: ENSMUSG00000039539
AA Change: E17G

Domain	Start	End	E-Value	Type
Pfam:Sarcoglycan_1	38	201	4.4e-54	PFAM

Meta Mutation Damage Score

0.1135

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.1%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The zeta-sarcoglycan gene measures over 465 kb and localizes to 8p22. This protein is part of the sarcoglycan complex, a group of 6 proteins. The sarcoglycans are all N-glycosylated transmembrane proteins with a short intra-cellular domain, a single transmembrane region and a large extra-cellular domain containing a carboxyl-terminal cluster with several conserved cysteine residues. The sarcoglycan complex is part of the dystrophin-associated glycoprotein complex (DGC), which bridges the inner cytoskeleton and the extra-cellular matrix. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adcy1	A	G	11: 7,080,348 (GRCm39)	T364A	probably benign	Het
Adcy2	T	C	13: 68,790,650 (GRCm39)	T905A	probably damaging	Het
Akap9	C	A	5: 4,026,235 (GRCm39)	Q1297K	possibly damaging	Het
Ankrd53	A	G	6: 83,740,244 (GRCm39)	E104G	possibly damaging	Het
Anks1	T	C	17: 28,205,262 (GRCm39)	F274L	probably damaging	Het
Btaf1	A	G	19: 36,958,486 (GRCm39)	T668A	probably benign	Het
Coch	A	G	12: 51,649,609 (GRCm39)	I307V	probably benign	Het
Colec11	T	C	12: 28,644,907 (GRCm39)	M196V	probably benign	Het
Cyp2c54	A	G	19: 40,058,688 (GRCm39)	I248T	probably benign	Het
D17H6S53E	A	G	17: 35,346,512 (GRCm39)	E141G	probably benign	Het
Dffb	T	C	4: 154,049,976 (GRCm39)	T296A	probably damaging	Het
Dock8	A	G	19: 25,057,241 (GRCm39)	Q216R	probably benign	Het
Elp1	C	T	4: 56,798,708 (GRCm39)	V85M	possibly damaging	Het
Emilin3	T	C	2: 160,750,177 (GRCm39)	D477G	possibly damaging	Het
Esp4	A	G	17: 40,913,484 (GRCm39)	K117R	unknown	Het
Fam186b	A	G	15: 99,178,396 (GRCm39)	L310S	probably benign	Het
Fpr-rs4	CAGGAA	CA	17: 18,242,596 (GRCm39)		probably null	Het
H2-T3	T	C	17: 36,500,957 (GRCm39)	T20A	possibly damaging	Het
Htr1d	T	C	4: 136,170,815 (GRCm39)	I348T	probably damaging	Het
Hyal4	A	T	6: 24,765,737 (GRCm39)	S364C	probably damaging	Het
Igkv1-133	A	T	6: 67,701,944 (GRCm39)	Q16L	probably benign	Het
Irs2	C	T	8: 11,057,643 (GRCm39)	G263D	probably damaging	Het
Itih3	A	G	14: 30,636,700 (GRCm39)	Y38H	probably damaging	Het
Kif21a	A	G	15: 90,849,798 (GRCm39)	V35A	probably damaging	Het
Klhl14	A	T	18: 21,690,953 (GRCm39)	V499D	probably damaging	Het
Kmt2d	T	C	15: 98,740,783 (GRCm39)		probably benign	Het
Loxl4	A	G	19: 42,596,015 (GRCm39)	V146A	probably benign	Het
Met	A	T	6: 17,549,085 (GRCm39)	D979V	probably damaging	Het
Mga	A	G	2: 119,772,245 (GRCm39)	T1702A	probably damaging	Het
Midn	A	G	10: 79,986,144 (GRCm39)	D78G	probably benign	Het
Mlh3	C	T	12: 85,315,169 (GRCm39)	C339Y	probably damaging	Het
Mog	T	C	17: 37,323,338 (GRCm39)	H200R	possibly damaging	Het
Nadk2	T	A	15: 9,084,303 (GRCm39)	W139R	probably damaging	Het
Nsd3	A	G	8: 26,152,835 (GRCm39)	T392A	probably damaging	Het
Pbld2	T	C	10: 62,897,470 (GRCm39)	L57P	probably damaging	Het
Racgap1	T	A	15: 99,540,772 (GRCm39)	N26I	probably damaging	Het
Rsf1	ATGGCG	ATGGCGACGGTGGCG	7: 97,229,111 (GRCm39)		probably benign	Het
Rspry1	A	G	8: 95,376,405 (GRCm39)	D309G	probably damaging	Het
Slc16a10	A	G	10: 40,017,890 (GRCm39)	V48A	probably benign	Het
Smad1	A	G	8: 80,066,327 (GRCm39)	V450A	probably benign	Het
Smad9	C	T	3: 54,696,705 (GRCm39)	R257W	probably damaging	Het
Snrpb	C	A	2: 130,017,299 (GRCm39)	R73L	probably null	Het
Spag11a	A	G	8: 19,209,417 (GRCm39)	D69G	probably benign	Het
Sptbn1	T	C	11: 30,090,593 (GRCm39)	H559R	probably damaging	Het
Strn3	T	C	12: 51,707,999 (GRCm39)	Y132C	possibly damaging	Het
Tasor2	T	C	13: 3,645,556 (GRCm39)	T98A	probably benign	Het
Tgm6	T	A	2: 129,993,681 (GRCm39)	V640E	possibly damaging	Het
Trim54	G	A	5: 31,294,320 (GRCm39)	V319M	possibly damaging	Het
Trpm1	A	G	7: 63,894,601 (GRCm39)	Y951C	probably damaging	Het
Ube3a	T	A	7: 58,921,860 (GRCm39)	N77K	probably damaging	Het
Uhrf1	C	T	17: 56,624,023 (GRCm39)	T482I	probably damaging	Het
Veph1	C	T	3: 66,122,858 (GRCm39)	V224I	probably benign	Het
Vmn1r30	A	T	6: 58,412,437 (GRCm39)	F132I	probably benign	Het
Vmn1r88	A	C	7: 12,911,790 (GRCm39)	M49L	probably benign	Het
Vmn2r24	A	G	6: 123,792,997 (GRCm39)	R775G	probably damaging	Het
Zfp60	T	A	7: 27,448,753 (GRCm39)	F474I	probably benign	Het
Zkscan8	C	T	13: 21,704,946 (GRCm39)	R259Q	probably damaging	Het

Other mutations in Sgcz

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01966:Sgcz	APN	8	38,107,169 (GRCm39)	missense	probably damaging	1.00
IGL02593:Sgcz	APN	8	37,990,432 (GRCm39)	missense	probably damaging	0.97
IGL03237:Sgcz	APN	8	38,030,332 (GRCm39)	missense	probably benign	0.01
IGL03238:Sgcz	APN	8	38,030,294 (GRCm39)	critical splice donor site	probably null
R0076:Sgcz	UTSW	8	38,012,596 (GRCm39)	splice site	probably benign
R0276:Sgcz	UTSW	8	38,420,073 (GRCm39)	missense	probably benign	0.18
R2095:Sgcz	UTSW	8	38,007,546 (GRCm39)	splice site	probably benign
R3623:Sgcz	UTSW	8	38,420,201 (GRCm39)	missense	probably damaging	0.96
R3862:Sgcz	UTSW	8	37,990,565 (GRCm39)	missense	probably benign
R3863:Sgcz	UTSW	8	37,990,565 (GRCm39)	missense	probably benign
R3953:Sgcz	UTSW	8	37,993,346 (GRCm39)	splice site	probably benign
R3956:Sgcz	UTSW	8	37,993,346 (GRCm39)	splice site	probably benign
R5120:Sgcz	UTSW	8	37,993,420 (GRCm39)	missense	probably benign	0.30
R5121:Sgcz	UTSW	8	38,006,821 (GRCm39)	missense	probably damaging	1.00
R5431:Sgcz	UTSW	8	38,107,138 (GRCm39)	missense	probably damaging	0.98
R5913:Sgcz	UTSW	8	37,993,425 (GRCm39)	missense	possibly damaging	0.75
R6921:Sgcz	UTSW	8	37,993,443 (GRCm39)	missense	probably damaging	1.00
R7151:Sgcz	UTSW	8	38,006,833 (GRCm39)	missense	possibly damaging	0.67
R7412:Sgcz	UTSW	8	37,990,565 (GRCm39)	missense	probably benign
R7507:Sgcz	UTSW	8	38,420,200 (GRCm39)	missense	probably benign	0.05
R7554:Sgcz	UTSW	8	38,030,426 (GRCm39)	splice site	probably null
R8121:Sgcz	UTSW	8	37,990,457 (GRCm39)	missense	probably damaging	1.00
R8355:Sgcz	UTSW	8	38,190,239 (GRCm39)	missense	probably benign	0.00
R8455:Sgcz	UTSW	8	38,190,239 (GRCm39)	missense	probably benign	0.00
R8486:Sgcz	UTSW	8	38,190,207 (GRCm39)	missense	probably benign	0.01
R8871:Sgcz	UTSW	8	38,420,103 (GRCm39)	missense	probably damaging	1.00
R8931:Sgcz	UTSW	8	38,107,140 (GRCm39)	missense	probably damaging	0.98
R8997:Sgcz	UTSW	8	39,127,894 (GRCm39)	missense	probably benign	0.02

Predicted Primers

PCR Primer
(F):5'- GGTAAAATTGTGGTGGTACTTACC -3'
(R):5'- GCTATGTCAGTAACACAGACAATG -3'

Sequencing Primer
(F):5'- TACCACAGTGAAATTCATAACCTTC -3'
(R):5'- GCAACTTCCTCTCATCCCTCATG -3'

Posted On

2015-02-19