Incidental Mutation 'R3683:Gldn'
ID 269434
Institutional Source Beutler Lab
Gene Symbol Gldn
Ensembl Gene ENSMUSG00000046167
Gene Name gliomedin
Synonyms CRG-L2, Crlg2
MMRRC Submission 040681-MU
Accession Numbers
Essential gene? Possibly non essential (E-score: 0.251) question?
Stock # R3683 (G1)
Quality Score 225
Status Not validated
Chromosome 9
Chromosomal Location 54193770-54249061 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to A at 54245624 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Glutamic Acid to Lysine at position 392 (E392K)
Ref Sequence ENSEMBL: ENSMUSP00000056080 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000056740]
AlphaFold Q8BMF8
Predicted Effect possibly damaging
Transcript: ENSMUST00000056740
AA Change: E392K

PolyPhen 2 Score 0.580 (Sensitivity: 0.88; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000056080
Gene: ENSMUSG00000046167
AA Change: E392K

DomainStartEndE-ValueType
transmembrane domain 13 35 N/A INTRINSIC
Pfam:Collagen 136 195 8.3e-11 PFAM
low complexity region 199 211 N/A INTRINSIC
low complexity region 213 221 N/A INTRINSIC
low complexity region 236 261 N/A INTRINSIC
OLF 299 543 1.97e-35 SMART
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.5%
  • 10x: 97.1%
  • 20x: 94.5%
Validation Efficiency
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele fail to form heminodes without overt neurological abnormalities or alteration in nerve conduction. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 45 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930595M18Rik T C X: 80,463,841 (GRCm39) D622G possibly damaging Het
Acad11 T C 9: 103,992,543 (GRCm39) I495T probably damaging Het
Acat1 C T 9: 53,498,765 (GRCm39) A307T probably damaging Het
Ahdc1 T C 4: 132,793,013 (GRCm39) L1418P possibly damaging Het
Bmp2 T A 2: 133,396,392 (GRCm39) V16D probably benign Het
Cables2 G A 2: 179,906,263 (GRCm39) R121* probably null Het
Calb2 A G 8: 110,883,620 (GRCm39) Y35H probably benign Het
Cdon A G 9: 35,400,328 (GRCm39) E1014G possibly damaging Het
Clcn7 T C 17: 25,369,567 (GRCm39) L301P possibly damaging Het
Corin T C 5: 72,488,198 (GRCm39) D610G probably damaging Het
Csrnp2 A T 15: 100,379,879 (GRCm39) S471T probably benign Het
Dnah7a C A 1: 53,483,675 (GRCm39) M3367I probably benign Het
Elp4 A T 2: 105,533,106 (GRCm39) M413K possibly damaging Het
Fat1 A G 8: 45,470,975 (GRCm39) D1593G probably benign Het
Fbxw24 G A 9: 109,437,110 (GRCm39) P259L possibly damaging Het
Ggta1 T A 2: 35,298,000 (GRCm39) T162S probably benign Het
Klra9 T C 6: 130,168,260 (GRCm39) N2S probably benign Het
Lama1 A G 17: 68,075,328 (GRCm39) D1015G probably benign Het
Lct T C 1: 128,231,963 (GRCm39) M629V probably damaging Het
Myg1 G C 15: 102,246,171 (GRCm39) G349R probably damaging Het
Nrxn1 T C 17: 90,930,880 (GRCm39) D779G probably damaging Het
Or2d3c G A 7: 106,526,301 (GRCm39) R122* probably null Het
Or4a73 C A 2: 89,421,099 (GRCm39) R120L probably damaging Het
Or4c118 A T 2: 88,975,364 (GRCm39) M1K probably null Het
Or5d37 T A 2: 87,923,603 (GRCm39) I226F probably damaging Het
Osmr A C 15: 6,866,534 (GRCm39) V380G possibly damaging Het
Phf21b A G 15: 84,682,891 (GRCm39) I222T probably damaging Het
Ptprq G T 10: 107,544,489 (GRCm39) T347K probably benign Het
Sema6d G T 2: 124,496,146 (GRCm39) L63F possibly damaging Het
Serpinb9b C T 13: 33,213,581 (GRCm39) A46V probably damaging Het
Sf3b3 A G 8: 111,540,253 (GRCm39) probably null Het
Smpd1 T A 7: 105,204,609 (GRCm39) C163S probably damaging Het
Stat4 C T 1: 52,052,981 (GRCm39) T54I possibly damaging Het
Tacc2 A G 7: 130,226,800 (GRCm39) S1162G probably benign Het
Tbc1d20 C T 2: 152,153,737 (GRCm39) T354I probably benign Het
Tbc1d31 T C 15: 57,815,210 (GRCm39) probably null Het
Tmcc1 C CAT 6: 116,019,831 (GRCm39) probably null Het
Tmem181a T A 17: 6,346,061 (GRCm39) L185H probably damaging Het
Unc79 T A 12: 103,041,062 (GRCm39) N698K probably benign Het
Utrn A G 10: 12,542,579 (GRCm39) M1802T probably benign Het
Vmn1r8 A C 6: 57,013,260 (GRCm39) T104P probably damaging Het
Vmn2r13 C A 5: 109,304,721 (GRCm39) R570I probably damaging Het
Zfand6 G A 7: 84,283,570 (GRCm39) P11S probably damaging Het
Zfp1005 A G 2: 150,109,976 (GRCm39) K222R probably benign Het
Zmpste24 A G 4: 120,918,288 (GRCm39) F445L probably damaging Het
Other mutations in Gldn
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00585:Gldn APN 9 54,245,748 (GRCm39) missense probably damaging 0.99
IGL01778:Gldn APN 9 54,241,776 (GRCm39) splice site probably null
IGL02425:Gldn APN 9 54,246,005 (GRCm39) missense probably damaging 1.00
R2284:Gldn UTSW 9 54,193,849 (GRCm39) nonsense probably null
R2902:Gldn UTSW 9 54,243,098 (GRCm39) missense possibly damaging 0.84
R3055:Gldn UTSW 9 54,245,807 (GRCm39) missense probably damaging 0.96
R3684:Gldn UTSW 9 54,245,624 (GRCm39) missense possibly damaging 0.58
R3732:Gldn UTSW 9 54,245,946 (GRCm39) missense possibly damaging 0.76
R3732:Gldn UTSW 9 54,245,946 (GRCm39) missense possibly damaging 0.76
R3733:Gldn UTSW 9 54,245,946 (GRCm39) missense possibly damaging 0.76
R3734:Gldn UTSW 9 54,245,946 (GRCm39) missense possibly damaging 0.76
R4668:Gldn UTSW 9 54,239,302 (GRCm39) nonsense probably null
R5228:Gldn UTSW 9 54,242,003 (GRCm39) missense probably damaging 0.98
R5574:Gldn UTSW 9 54,220,206 (GRCm39) missense probably damaging 1.00
R5773:Gldn UTSW 9 54,241,775 (GRCm39) critical splice donor site probably null
R5926:Gldn UTSW 9 54,245,722 (GRCm39) missense possibly damaging 0.68
R5943:Gldn UTSW 9 54,245,721 (GRCm39) missense possibly damaging 0.81
R6331:Gldn UTSW 9 54,194,162 (GRCm39) missense probably benign 0.32
R6671:Gldn UTSW 9 54,245,691 (GRCm39) missense probably damaging 1.00
R6821:Gldn UTSW 9 54,246,054 (GRCm39) missense probably benign 0.01
R6897:Gldn UTSW 9 54,242,158 (GRCm39) splice site probably null
R7579:Gldn UTSW 9 54,245,648 (GRCm39) missense probably benign 0.21
R7604:Gldn UTSW 9 54,245,877 (GRCm39) missense probably benign
R7705:Gldn UTSW 9 54,245,976 (GRCm39) missense probably benign 0.00
R9036:Gldn UTSW 9 54,245,747 (GRCm39) missense probably benign 0.00
R9672:Gldn UTSW 9 54,245,780 (GRCm39) missense probably damaging 0.97
Z1177:Gldn UTSW 9 54,193,944 (GRCm39) missense probably benign 0.37
Predicted Primers PCR Primer
(F):5'- GGAGCACTACAAATCACCAGTG -3'
(R):5'- GCTACAAGGATGCTTGAGCC -3'

Sequencing Primer
(F):5'- AGTGTCCACCAACATGTGTG -3'
(R):5'- AGGATGCTTGAGCCATCCAC -3'
Posted On 2015-02-19