Mutagenetix > Incidental Mutation

Incidental Mutation 'R3816:Agfg2'

274299

Institutional Source

Beutler Lab

Gene Symbol

Agfg2

Ensembl Gene

ENSMUSG00000029722

Gene Name

ArfGAP with FG repeats 2

Synonyms

A630095P14Rik, Hrbl

MMRRC Submission

040881-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R3816 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

137648725-137682988 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 137652036 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 441 (D441G)

Ref Sequence

ENSEMBL: ENSMUSP00000098112 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000031736] [ENSMUST00000100544] [ENSMUST00000151839] [ENSMUST00000198657]

AlphaFold

Q80WC7

Predicted Effect

probably benign
Transcript: ENSMUST00000031736
AA Change: D430G

PolyPhen 2 Score 0.008 (Sensitivity: 0.96; Specificity: 0.76)

SMART Domains

Protein: ENSMUSP00000031736
Gene: ENSMUSG00000029722
AA Change: D430G

Domain	Start	End	E-Value	Type
ArfGap	27	153	7.19e-35	SMART
low complexity region	194	219	N/A	INTRINSIC
low complexity region	235	249	N/A	INTRINSIC
low complexity region	269	283	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000100544
AA Change: D441G

PolyPhen 2 Score 0.027 (Sensitivity: 0.95; Specificity: 0.81)

SMART Domains

Protein: ENSMUSP00000098112
Gene: ENSMUSG00000029722
AA Change: D441G

Domain	Start	End	E-Value	Type
ArfGap	27	153	7.19e-35	SMART
low complexity region	194	219	N/A	INTRINSIC
low complexity region	235	249	N/A	INTRINSIC
low complexity region	269	283	N/A	INTRINSIC
low complexity region	285	296	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000147518

Predicted Effect

probably benign
Transcript: ENSMUST00000151839

SMART Domains

Protein: ENSMUSP00000117351
Gene: ENSMUSG00000029722

Domain	Start	End	E-Value	Type
ArfGap	27	153	7.19e-35	SMART
low complexity region	194	219	N/A	INTRINSIC
low complexity region	235	249	N/A	INTRINSIC
low complexity region	268	282	N/A	INTRINSIC
low complexity region	284	295	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000198657

SMART Domains

Protein: ENSMUSP00000143273
Gene: ENSMUSG00000029722

Domain	Start	End	E-Value	Type
low complexity region	24	51	N/A	INTRINSIC

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.3%
3x: 98.8%
10x: 97.7%
20x: 96.2%

Validation Efficiency

100% (62/62)

MGI Phenotype

FUNCTION: This gene encodes a paralog of the HIV-1 Rev binding proteins that serve as cellular co-factors for HIV-1 Rev protein in shuttling viral pre-mRNAs from the nucleus to the cytoplasm. The encoded protein contains an ADP-ribosylation factor GTPase activating protein (Arf-GAP) zinc finger domain, several phenylalanine-glycine (FG) motifs and asparagine-proline-phenylalanine (NPF) motifs. Alternate splicing of this gene results in multiple transcript variants. [provided by RefSeq, Dec 2014]

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aak1	T	C	6: 86,936,024 (GRCm39)		probably benign	Het
Abca2	A	G	2: 25,336,083 (GRCm39)	Y2151C	probably damaging	Het
Adamts3	T	A	5: 89,853,123 (GRCm39)	H509L	probably damaging	Het
Arl8b	T	A	6: 108,790,658 (GRCm39)	V65D	probably damaging	Het
As3mt	A	T	19: 46,696,216 (GRCm39)	D8V	probably benign	Het
Ass1	G	T	2: 31,400,117 (GRCm39)		probably benign	Het
Cdc42bpa	A	G	1: 179,972,451 (GRCm39)	I634V	possibly damaging	Het
Cflar	T	C	1: 58,791,582 (GRCm39)	V298A	probably benign	Het
Csmd1	C	T	8: 16,052,522 (GRCm39)	A2201T	probably damaging	Het
Cyp4a12b	A	T	4: 115,289,667 (GRCm39)	D178V	probably damaging	Het
Dlec1	C	T	9: 118,953,911 (GRCm39)	A610V	probably damaging	Het
Dock1	C	T	7: 134,346,015 (GRCm39)	R186*	probably null	Het
E130018O15Rik	T	C	5: 35,540,110 (GRCm39)		noncoding transcript	Het
Gabrg3	G	A	7: 57,031,412 (GRCm39)	Q43*	probably null	Het
Gipc2	T	C	3: 151,871,481 (GRCm39)	K15R	probably benign	Het
Gjb2	A	G	14: 57,337,530 (GRCm39)	V226A	probably benign	Het
Glipr2	G	T	4: 43,977,522 (GRCm39)	A51S	possibly damaging	Het
Gsdme	A	C	6: 50,196,391 (GRCm39)	S340A	probably benign	Het
H2-M10.2	A	T	17: 36,597,254 (GRCm39)	Y20*	probably null	Het
Hapstr1	T	A	16: 8,648,358 (GRCm39)	I12N	probably damaging	Het
Hlcs	A	G	16: 93,933,947 (GRCm39)	V242A	probably benign	Het
Ifi44	T	C	3: 151,454,894 (GRCm39)	I110M	possibly damaging	Het
Il18r1	T	C	1: 40,526,132 (GRCm39)		probably benign	Het
Kcnd3	C	T	3: 105,566,082 (GRCm39)	A421V	probably damaging	Het
Khk	T	C	5: 31,084,060 (GRCm39)	S80P	probably damaging	Het
Ly9	G	T	1: 171,416,653 (GRCm39)	T537N	possibly damaging	Het
Muc4	C	A	16: 32,754,529 (GRCm38)	H1468N	probably benign	Het
Myo1g	A	G	11: 6,460,926 (GRCm39)	V706A	probably benign	Het
Npat	T	C	9: 53,481,216 (GRCm39)	S1008P	probably damaging	Het
Or2ag18	A	G	7: 106,405,027 (GRCm39)	I214T	probably damaging	Het
Or5p59	A	G	7: 107,702,705 (GRCm39)	Y63C	possibly damaging	Het
Or8b12c	C	T	9: 37,715,465 (GRCm39)	S86L	probably benign	Het
Or8b40	A	T	9: 38,027,922 (GRCm39)	T277S	possibly damaging	Het
Or8b55	A	G	9: 38,727,722 (GRCm39)	K308E	possibly damaging	Het
Pcdha2	A	G	18: 37,074,748 (GRCm39)	Y793C	probably benign	Het
Pcdhb4	A	T	18: 37,441,065 (GRCm39)	D125V	probably damaging	Het
Pdgfrb	A	G	18: 61,212,017 (GRCm39)	D844G	probably damaging	Het
Phf3	T	C	1: 30,844,834 (GRCm39)	D1375G	probably damaging	Het
Pigu	A	T	2: 155,141,063 (GRCm39)	F276I	probably damaging	Het
Pomgnt1	T	A	4: 116,011,139 (GRCm39)		probably null	Het
Psmd9	C	T	5: 123,372,653 (GRCm39)		probably benign	Het
Rac2	T	C	15: 78,450,199 (GRCm39)	D47G	possibly damaging	Het
Rufy4	T	C	1: 74,186,822 (GRCm39)	C537R	probably damaging	Het
Sall1	G	T	8: 89,759,303 (GRCm39)	A267E	probably benign	Het
Secisbp2l	C	T	2: 125,582,657 (GRCm39)	G933D	possibly damaging	Het
Serpina3k	A	G	12: 104,307,221 (GRCm39)	E151G	probably benign	Het
Skint5	A	G	4: 113,486,319 (GRCm39)		probably benign	Het
Slc51b	A	G	9: 65,321,300 (GRCm39)		probably benign	Het
Sorl1	A	G	9: 41,975,345 (GRCm39)	L487P	possibly damaging	Het
Sspo	A	T	6: 48,458,037 (GRCm39)	E3269V	possibly damaging	Het
Star	G	A	8: 26,299,905 (GRCm39)	M82I	probably benign	Het
Tnfrsf11a	C	T	1: 105,737,085 (GRCm39)	T64I	probably damaging	Het
Top2b	T	G	14: 16,409,189 (GRCm38)	I777M	probably damaging	Het
Usp32	A	G	11: 84,885,210 (GRCm39)		probably null	Het
Vmn2r18	T	C	5: 151,485,148 (GRCm39)	N782S	probably benign	Het
Vwa3a	A	G	7: 120,399,602 (GRCm39)	T1028A	probably benign	Het
Xrn2	G	A	2: 146,870,120 (GRCm39)	G270R	probably damaging	Het
Zbbx	G	T	3: 74,992,802 (GRCm39)	Q231K	probably benign	Het

Other mutations in Agfg2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R0020:Agfg2	UTSW	5	137,652,064 (GRCm39)	missense	probably benign	0.22
R0020:Agfg2	UTSW	5	137,652,064 (GRCm39)	missense	probably benign	0.22
R0584:Agfg2	UTSW	5	137,665,992 (GRCm39)	missense	probably damaging	1.00
R1692:Agfg2	UTSW	5	137,662,633 (GRCm39)	missense	probably damaging	0.99
R1982:Agfg2	UTSW	5	137,662,515 (GRCm39)	missense	possibly damaging	0.87
R2140:Agfg2	UTSW	5	137,665,378 (GRCm39)	missense	probably damaging	1.00
R4527:Agfg2	UTSW	5	137,682,798 (GRCm39)	missense	unknown
R4645:Agfg2	UTSW	5	137,682,854 (GRCm39)	utr 5 prime	probably benign
R4965:Agfg2	UTSW	5	137,665,439 (GRCm39)	critical splice acceptor site	probably null
R5022:Agfg2	UTSW	5	137,658,422 (GRCm39)	critical splice donor site	probably null
R5426:Agfg2	UTSW	5	137,666,020 (GRCm39)	missense	probably damaging	1.00
R6140:Agfg2	UTSW	5	137,665,347 (GRCm39)	missense	probably damaging	1.00
R7474:Agfg2	UTSW	5	137,652,130 (GRCm39)	missense	possibly damaging	0.96
R7752:Agfg2	UTSW	5	137,665,966 (GRCm39)	missense	probably damaging	0.96
R7901:Agfg2	UTSW	5	137,665,966 (GRCm39)	missense	probably damaging	0.96
R8172:Agfg2	UTSW	5	137,665,431 (GRCm39)	missense	probably damaging	0.99
R8190:Agfg2	UTSW	5	137,653,664 (GRCm39)	missense	probably benign	0.06
R9005:Agfg2	UTSW	5	137,650,744 (GRCm39)	missense	probably damaging	0.98
R9238:Agfg2	UTSW	5	137,653,622 (GRCm39)	missense	probably damaging	0.99
R9342:Agfg2	UTSW	5	137,652,114 (GRCm39)	missense	probably benign	0.00
R9373:Agfg2	UTSW	5	137,662,476 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- AAATCAATGCACTTGCGCAC -3'
(R):5'- AAAATGTCAGCTCATCTGCCTG -3'

Sequencing Primer
(F):5'- AATGCAATGCCGTTCACGTG -3'
(R):5'- AGCTCATCTGCCTGAAGTCTG -3'

Posted On

2015-04-02