Incidental Mutation 'IGL00938:Poln'
ID27445
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Poln
Ensembl Gene ENSMUSG00000045102
Gene NameDNA polymerase N
SynonymsPOL4P
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.160) question?
Stock #IGL00938
Quality Score
Status
Chromosome5
Chromosomal Location34007179-34169448 bp(-) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) C to A at 34129224 bp
ZygosityHeterozygous
Amino Acid Change Cysteine to Phenylalanine at position 200 (C200F)
Ref Sequence ENSEMBL: ENSMUSP00000144578 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000042954] [ENSMUST00000202409] [ENSMUST00000202638]
Predicted Effect probably damaging
Transcript: ENSMUST00000042954
AA Change: C200F

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000036110
Gene: ENSMUSG00000045102
AA Change: C200F

DomainStartEndE-ValueType
low complexity region 110 121 N/A INTRINSIC
POLAc 605 814 7.88e-67 SMART
low complexity region 829 843 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000202325
Predicted Effect probably damaging
Transcript: ENSMUST00000202409
AA Change: C200F

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000144578
Gene: ENSMUSG00000045102
AA Change: C200F

DomainStartEndE-ValueType
low complexity region 110 121 N/A INTRINSIC
coiled coil region 448 471 N/A INTRINSIC
POLAc 587 796 2.6e-69 SMART
low complexity region 811 825 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000202638
AA Change: C200F

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000143793
Gene: ENSMUSG00000045102
AA Change: C200F

DomainStartEndE-ValueType
low complexity region 110 121 N/A INTRINSIC
coiled coil region 448 471 N/A INTRINSIC
POLAc 605 770 3e-37 SMART
low complexity region 785 799 N/A INTRINSIC
Coding Region Coverage
Validation Efficiency
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele exhibit reduced meiotic double-strand breaks at a meiotic recombination hot spot harboring insertion/deletion polymorphisms, but are otherwise normal. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 23 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adamtsl1 A G 4: 86,342,278 I909V possibly damaging Het
Alkal2 C A 12: 30,887,090 H101N probably damaging Het
Camk2g C T 14: 20,737,330 G500S probably damaging Het
Col4a1 G A 8: 11,236,456 probably benign Het
Fry T A 5: 150,370,180 V446E probably damaging Het
Gpc2 C A 5: 138,278,907 R86L probably benign Het
Hnrnpm C A 17: 33,649,902 R517L probably damaging Het
Krt16 A T 11: 100,248,717 C58* probably null Het
Ltbp2 T C 12: 84,831,799 R309G probably benign Het
Mapkapk5 T C 5: 121,537,103 probably benign Het
Mpdz G A 4: 81,292,512 A1665V probably damaging Het
Mpp7 T C 18: 7,353,297 T470A probably benign Het
Mypn T A 10: 63,192,423 D287V probably damaging Het
Nup160 T C 2: 90,732,827 L1312P probably damaging Het
Olfr1250 C T 2: 89,657,076 V122M probably damaging Het
Olfr427 T C 1: 174,100,367 M303T probably benign Het
Pparg A G 6: 115,463,139 I225V probably benign Het
Pspn T C 17: 56,999,629 E100G probably benign Het
Slc12a8 G A 16: 33,540,897 V50I probably damaging Het
Suz12 A G 11: 80,007,569 probably benign Het
Ubiad1 A G 4: 148,436,357 F270S probably benign Het
Vmn1r185 T C 7: 26,611,691 I130V probably benign Het
Vmn1r210 A T 13: 22,827,368 C249* probably null Het
Other mutations in Poln
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00803:Poln APN 5 34122760 missense probably benign 0.17
IGL02081:Poln APN 5 34129139 missense probably benign
IGL02411:Poln APN 5 34113322 nonsense probably null
IGL02440:Poln APN 5 34129130 missense probably damaging 1.00
IGL02484:Poln APN 5 34129377 missense probably damaging 1.00
IGL02577:Poln APN 5 34113335 missense probably benign 0.03
IGL03113:Poln APN 5 34116862 missense probably benign 0.01
R0034:Poln UTSW 5 34115418 missense possibly damaging 0.78
R0034:Poln UTSW 5 34115418 missense possibly damaging 0.78
R0068:Poln UTSW 5 34077088 splice site probably benign
R0068:Poln UTSW 5 34077088 splice site probably benign
R0325:Poln UTSW 5 34149764 missense probably benign 0.00
R0578:Poln UTSW 5 34014338 missense probably damaging 1.00
R0631:Poln UTSW 5 34118958 missense possibly damaging 0.93
R1171:Poln UTSW 5 34103940 missense probably damaging 1.00
R1266:Poln UTSW 5 34133109 critical splice donor site probably null
R1418:Poln UTSW 5 34078975 missense probably benign 0.00
R1449:Poln UTSW 5 34014338 missense probably damaging 1.00
R1558:Poln UTSW 5 34032799 missense probably benign 0.04
R1723:Poln UTSW 5 34122672 missense probably benign 0.16
R1806:Poln UTSW 5 34107150 splice site probably benign
R4124:Poln UTSW 5 34103951 missense probably benign 0.32
R4125:Poln UTSW 5 34103951 missense probably benign 0.32
R4128:Poln UTSW 5 34103951 missense probably benign 0.32
R4155:Poln UTSW 5 34009649 missense possibly damaging 0.90
R4353:Poln UTSW 5 34129452 missense probably benign 0.00
R4717:Poln UTSW 5 34129448 missense possibly damaging 0.46
R4788:Poln UTSW 5 34129331 missense probably benign 0.30
R4981:Poln UTSW 5 34107085 critical splice donor site probably null
R5456:Poln UTSW 5 34007442 missense possibly damaging 0.95
R6020:Poln UTSW 5 34109431 missense probably damaging 0.99
R6484:Poln UTSW 5 34129513 missense probably benign 0.01
R7134:Poln UTSW 5 34118996 missense possibly damaging 0.86
Posted On2013-04-17