Incidental Mutation 'R3766:Psg26'
ID |
274706 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Psg26
|
Ensembl Gene |
ENSMUSG00000070799 |
Gene Name |
pregnancy-specific beta-1-glycoprotein 26 |
Synonyms |
EG574429, cea14 |
MMRRC Submission |
040743-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.048)
|
Stock # |
R3766 (G1)
|
Quality Score |
225 |
Status
|
Not validated
|
Chromosome |
7 |
Chromosomal Location |
18208507-18218102 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to C
at 18208996 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Threonine to Alanine
at position 471
(T471A)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000092392
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000094798]
|
AlphaFold |
Q4KL65 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000094798
AA Change: T471A
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
SMART Domains |
Protein: ENSMUSP00000092392 Gene: ENSMUSG00000070799 AA Change: T471A
Domain | Start | End | E-Value | Type |
IG
|
40 |
141 |
4.93e-3 |
SMART |
IG
|
160 |
261 |
2.39e-1 |
SMART |
IG
|
280 |
379 |
6.07e-3 |
SMART |
IGc2
|
397 |
461 |
5.48e-10 |
SMART |
|
Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.4%
- 20x: 95.4%
|
Validation Efficiency |
98% (41/42) |
Allele List at MGI |
|
Other mutations in this stock |
Total: 42 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Aacs |
C |
T |
5: 125,583,326 (GRCm39) |
T294M |
probably damaging |
Het |
Brf2 |
G |
T |
8: 27,614,496 (GRCm39) |
T230N |
possibly damaging |
Het |
Ccne2 |
A |
G |
4: 11,199,293 (GRCm39) |
|
probably benign |
Het |
Crbn |
T |
C |
6: 106,771,987 (GRCm39) |
K106E |
possibly damaging |
Het |
Cttnbp2nl |
G |
A |
3: 104,912,117 (GRCm39) |
T589I |
probably benign |
Het |
Dock10 |
A |
G |
1: 80,514,643 (GRCm39) |
S1091P |
probably damaging |
Het |
Fh1 |
A |
G |
1: 175,442,316 (GRCm39) |
V178A |
probably damaging |
Het |
Fndc1 |
A |
G |
17: 8,003,253 (GRCm39) |
S111P |
probably damaging |
Het |
Frk |
A |
G |
10: 34,360,001 (GRCm39) |
M1V |
probably null |
Het |
Gm29394 |
C |
T |
15: 57,912,024 (GRCm39) |
|
probably benign |
Het |
Herc2 |
A |
G |
7: 55,813,572 (GRCm39) |
D2601G |
probably damaging |
Het |
Hspa13 |
T |
C |
16: 75,561,974 (GRCm39) |
D75G |
probably benign |
Het |
Itgav |
T |
C |
2: 83,632,229 (GRCm39) |
|
probably null |
Het |
Kif6 |
A |
T |
17: 50,065,671 (GRCm39) |
|
probably benign |
Het |
Lypla1 |
G |
A |
1: 4,911,201 (GRCm39) |
R104Q |
probably benign |
Het |
Map1b |
T |
C |
13: 99,570,595 (GRCm39) |
K709E |
unknown |
Het |
Or52l1 |
A |
T |
7: 104,830,088 (GRCm39) |
I159K |
probably damaging |
Het |
Or56b1b |
G |
A |
7: 108,164,402 (GRCm39) |
P200L |
probably benign |
Het |
Pcdhb16 |
A |
T |
18: 37,611,249 (GRCm39) |
K70* |
probably null |
Het |
Pex5l |
T |
G |
3: 33,061,327 (GRCm39) |
D174A |
probably benign |
Het |
Plac8l1 |
A |
T |
18: 42,313,460 (GRCm39) |
M94K |
probably benign |
Het |
Plxna1 |
T |
C |
6: 89,311,757 (GRCm39) |
|
probably benign |
Het |
Pus3 |
C |
A |
9: 35,477,968 (GRCm39) |
T400K |
probably benign |
Het |
Pxk |
T |
C |
14: 8,136,863 (GRCm38) |
|
probably benign |
Het |
Rapgef2 |
T |
C |
3: 78,996,057 (GRCm39) |
T569A |
probably benign |
Het |
Sall4 |
T |
C |
2: 168,597,964 (GRCm39) |
Q292R |
possibly damaging |
Het |
Slc18b1 |
A |
G |
10: 23,674,647 (GRCm39) |
D34G |
probably damaging |
Het |
Slc45a1 |
T |
C |
4: 150,722,517 (GRCm39) |
R456G |
probably damaging |
Het |
Sox13 |
T |
C |
1: 133,318,536 (GRCm39) |
R81G |
possibly damaging |
Het |
Spag9 |
A |
G |
11: 93,951,109 (GRCm39) |
|
probably benign |
Het |
Ston1 |
C |
T |
17: 88,942,788 (GRCm39) |
P65S |
probably damaging |
Het |
Tada2b |
A |
T |
5: 36,633,761 (GRCm39) |
D197E |
probably benign |
Het |
Tcim |
T |
A |
8: 24,928,765 (GRCm39) |
R50W |
probably damaging |
Het |
Tnpo3 |
T |
C |
6: 29,579,688 (GRCm39) |
D235G |
probably benign |
Het |
Trim59 |
A |
G |
3: 68,944,137 (GRCm39) |
V401A |
probably benign |
Het |
Trpm3 |
A |
C |
19: 22,425,741 (GRCm39) |
Q32P |
probably benign |
Het |
Tubgcp5 |
T |
A |
7: 55,480,614 (GRCm39) |
M1018K |
probably damaging |
Het |
Ube2o |
A |
G |
11: 116,437,689 (GRCm39) |
|
probably benign |
Het |
Ugcg |
C |
T |
4: 59,207,798 (GRCm39) |
P46S |
probably benign |
Het |
Uvrag |
G |
T |
7: 98,537,350 (GRCm39) |
S615* |
probably null |
Het |
Vmn2r6 |
T |
A |
3: 64,463,929 (GRCm39) |
I302L |
probably benign |
Het |
Vmn2r73 |
C |
T |
7: 85,521,198 (GRCm39) |
V257I |
probably benign |
Het |
|
Other mutations in Psg26 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01010:Psg26
|
APN |
7 |
18,212,255 (GRCm39) |
missense |
possibly damaging |
0.83 |
IGL01383:Psg26
|
APN |
7 |
18,214,179 (GRCm39) |
missense |
possibly damaging |
0.90 |
IGL01453:Psg26
|
APN |
7 |
18,213,999 (GRCm39) |
missense |
possibly damaging |
0.91 |
IGL01603:Psg26
|
APN |
7 |
18,209,028 (GRCm39) |
missense |
probably damaging |
0.98 |
IGL02201:Psg26
|
APN |
7 |
18,214,071 (GRCm39) |
missense |
probably benign |
0.04 |
IGL02468:Psg26
|
APN |
7 |
18,212,387 (GRCm39) |
missense |
probably damaging |
0.96 |
IGL02648:Psg26
|
APN |
7 |
18,216,691 (GRCm39) |
missense |
probably benign |
0.05 |
IGL02812:Psg26
|
APN |
7 |
18,209,080 (GRCm39) |
missense |
probably benign |
0.00 |
R0226:Psg26
|
UTSW |
7 |
18,217,883 (GRCm39) |
missense |
possibly damaging |
0.81 |
R0352:Psg26
|
UTSW |
7 |
18,209,181 (GRCm39) |
missense |
probably benign |
0.00 |
R0369:Psg26
|
UTSW |
7 |
18,216,481 (GRCm39) |
nonsense |
probably null |
|
R0718:Psg26
|
UTSW |
7 |
18,212,212 (GRCm39) |
missense |
probably benign |
0.18 |
R0718:Psg26
|
UTSW |
7 |
18,209,160 (GRCm39) |
missense |
probably benign |
0.23 |
R1710:Psg26
|
UTSW |
7 |
18,213,966 (GRCm39) |
missense |
probably damaging |
0.99 |
R1899:Psg26
|
UTSW |
7 |
18,212,350 (GRCm39) |
missense |
probably benign |
0.01 |
R1958:Psg26
|
UTSW |
7 |
18,212,264 (GRCm39) |
missense |
probably benign |
0.04 |
R2102:Psg26
|
UTSW |
7 |
18,209,067 (GRCm39) |
missense |
probably damaging |
1.00 |
R4544:Psg26
|
UTSW |
7 |
18,212,464 (GRCm39) |
missense |
probably damaging |
1.00 |
R4977:Psg26
|
UTSW |
7 |
18,209,235 (GRCm39) |
missense |
probably benign |
0.11 |
R5000:Psg26
|
UTSW |
7 |
18,214,057 (GRCm39) |
missense |
possibly damaging |
0.95 |
R5376:Psg26
|
UTSW |
7 |
18,214,030 (GRCm39) |
missense |
probably benign |
|
R5416:Psg26
|
UTSW |
7 |
18,216,525 (GRCm39) |
missense |
probably benign |
|
R5435:Psg26
|
UTSW |
7 |
18,212,398 (GRCm39) |
missense |
possibly damaging |
0.60 |
R6000:Psg26
|
UTSW |
7 |
18,216,617 (GRCm39) |
nonsense |
probably null |
|
R6285:Psg26
|
UTSW |
7 |
18,216,753 (GRCm39) |
missense |
probably benign |
|
R7062:Psg26
|
UTSW |
7 |
18,216,521 (GRCm39) |
missense |
probably damaging |
1.00 |
R7083:Psg26
|
UTSW |
7 |
18,213,934 (GRCm39) |
nonsense |
probably null |
|
R7513:Psg26
|
UTSW |
7 |
18,209,225 (GRCm39) |
missense |
probably benign |
0.03 |
R7817:Psg26
|
UTSW |
7 |
18,216,572 (GRCm39) |
missense |
not run |
|
R7857:Psg26
|
UTSW |
7 |
18,212,215 (GRCm39) |
missense |
possibly damaging |
0.71 |
R7905:Psg26
|
UTSW |
7 |
18,209,242 (GRCm39) |
missense |
probably benign |
0.00 |
R8047:Psg26
|
UTSW |
7 |
18,212,474 (GRCm39) |
missense |
possibly damaging |
0.50 |
R8789:Psg26
|
UTSW |
7 |
18,216,494 (GRCm39) |
missense |
probably damaging |
1.00 |
R8877:Psg26
|
UTSW |
7 |
18,217,865 (GRCm39) |
missense |
probably benign |
0.01 |
R9012:Psg26
|
UTSW |
7 |
18,216,596 (GRCm39) |
missense |
probably benign |
0.19 |
R9203:Psg26
|
UTSW |
7 |
18,212,382 (GRCm39) |
missense |
probably damaging |
0.98 |
R9327:Psg26
|
UTSW |
7 |
18,216,480 (GRCm39) |
missense |
probably damaging |
1.00 |
R9547:Psg26
|
UTSW |
7 |
18,214,087 (GRCm39) |
missense |
probably benign |
0.00 |
Z1177:Psg26
|
UTSW |
7 |
18,214,216 (GRCm39) |
missense |
probably benign |
0.02 |
|
Predicted Primers |
PCR Primer
(F):5'- GGGCTGCATTGTCTACCAATAG -3'
(R):5'- CCGTTGGCTCTTCAACAATC -3'
Sequencing Primer
(F):5'- TGGTACCATGAGGACCATTGAATAC -3'
(R):5'- TCAGAGTTTGCAGCTCACAG -3'
|
Posted On |
2015-04-02 |