Incidental Mutation 'R3833:Dennd2a'
ID 275470
Institutional Source Beutler Lab
Gene Symbol Dennd2a
Ensembl Gene ENSMUSG00000038456
Gene Name DENN domain containing 2A
Synonyms B930096L08Rik
MMRRC Submission 040888-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.149) question?
Stock # R3833 (G1)
Quality Score 225
Status Validated
Chromosome 6
Chromosomal Location 39439312-39534801 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to T at 39483657 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Serine to Tyrosine at position 401 (S401Y)
Ref Sequence ENSEMBL: ENSMUSP00000116907 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000036877] [ENSMUST00000154149]
AlphaFold Q8C4S8
Predicted Effect probably damaging
Transcript: ENSMUST00000036877
AA Change: S401Y

PolyPhen 2 Score 0.981 (Sensitivity: 0.75; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000045367
Gene: ENSMUSG00000038456
AA Change: S401Y

DomainStartEndE-ValueType
Blast:DENN 9 430 1e-149 BLAST
low complexity region 445 457 N/A INTRINSIC
low complexity region 508 520 N/A INTRINSIC
uDENN 554 646 2.06e-31 SMART
DENN 653 837 7.1e-76 SMART
dDENN 888 953 1.84e-19 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000154149
AA Change: S401Y

PolyPhen 2 Score 0.981 (Sensitivity: 0.75; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000116907
Gene: ENSMUSG00000038456
AA Change: S401Y

DomainStartEndE-ValueType
Blast:DENN 9 420 1e-152 BLAST
Meta Mutation Damage Score 0.0689 question?
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.7%
  • 10x: 97.7%
  • 20x: 96.4%
Validation Efficiency 97% (70/72)
Allele List at MGI
Other mutations in this stock
Total: 72 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
9630041A04Rik G A 9: 101,820,062 (GRCm39) G161S probably damaging Het
Acp7 T C 7: 28,314,519 (GRCm39) D282G probably benign Het
Atp10d T A 5: 72,396,568 (GRCm39) C258S possibly damaging Het
Atp6ap1 T C X: 73,340,813 (GRCm39) I10T possibly damaging Het
Atp6v0d2 T G 4: 19,922,395 (GRCm39) N35H probably damaging Het
Bcat1 T A 6: 144,955,834 (GRCm39) D349V probably damaging Het
Cacnb2 A T 2: 14,986,236 (GRCm39) I338F probably damaging Het
Ccn6 T C 10: 39,030,945 (GRCm39) K193E probably benign Het
Ccr1 T C 9: 123,764,324 (GRCm39) T69A possibly damaging Het
Cenpe T G 3: 134,928,083 (GRCm39) probably benign Het
Cps1 G A 1: 67,178,946 (GRCm39) G53R probably damaging Het
Cstb T C 10: 78,263,184 (GRCm39) F70L probably benign Het
Cyb5d2 G T 11: 72,686,349 (GRCm39) S80R possibly damaging Het
Cyfip2 T C 11: 46,152,333 (GRCm39) D485G probably benign Het
Cyp27b1 G T 10: 126,886,929 (GRCm39) V382L probably damaging Het
Cyp8b1 C A 9: 121,745,109 (GRCm39) Q74H probably benign Het
Dnaaf5 T C 5: 139,167,320 (GRCm39) V447A possibly damaging Het
Dpp9 A T 17: 56,506,113 (GRCm39) F429I possibly damaging Het
Gcn1 A T 5: 115,730,191 (GRCm39) Q835L probably benign Het
Gtf2b T A 3: 142,477,153 (GRCm39) D8E probably benign Het
Hao1 A T 2: 134,364,925 (GRCm39) V234D probably damaging Het
Hephl1 T C 9: 14,981,044 (GRCm39) E796G probably damaging Het
Herc4 A G 10: 63,081,739 (GRCm39) I21V probably benign Het
Htt T A 5: 34,979,062 (GRCm39) V815D probably benign Het
Iglv2 A T 16: 19,079,593 (GRCm39) M1K probably null Het
Igsf8 G T 1: 172,145,837 (GRCm39) A315S probably benign Het
Il1a T C 2: 129,148,599 (GRCm39) D37G possibly damaging Het
Iqcb1 T A 16: 36,652,276 (GRCm39) C62* probably null Het
Itgad A T 7: 127,785,405 (GRCm39) T381S probably damaging Het
Itpkb T C 1: 180,161,260 (GRCm39) V462A probably benign Het
Kalrn T A 16: 33,860,259 (GRCm39) R199* probably null Het
Kif24 G T 4: 41,395,064 (GRCm39) A603D probably damaging Het
Kif26b GAAA GAA 1: 178,744,181 (GRCm39) probably null Het
Klrc3 A G 6: 129,620,181 (GRCm39) L24P probably damaging Het
Lmnb1 A C 18: 56,861,598 (GRCm39) D163A probably benign Het
Lrrc9 T C 12: 72,529,765 (GRCm39) L912P probably damaging Het
Mageh1 A T X: 151,820,004 (GRCm39) W111R probably damaging Het
Mapk7 A G 11: 61,380,680 (GRCm39) S641P possibly damaging Het
Mapt A T 11: 104,177,961 (GRCm39) Q38L possibly damaging Het
Med12 C A X: 100,339,498 (GRCm39) P2037Q possibly damaging Het
Med22 A G 2: 26,800,379 (GRCm39) S17P probably damaging Het
Mep1b C T 18: 21,219,296 (GRCm39) T150I possibly damaging Het
Mroh1 C T 15: 76,285,819 (GRCm39) T71I probably benign Het
Nap1l3 A G X: 121,305,995 (GRCm39) V241A possibly damaging Het
Pcdhga6 A T 18: 37,841,479 (GRCm39) N400Y probably damaging Het
Pdgfd T C 9: 6,359,762 (GRCm39) S278P probably damaging Het
Pgap1 A G 1: 54,596,624 (GRCm39) M39T probably damaging Het
Pgc C A 17: 48,040,236 (GRCm39) F93L probably null Het
Phf14 A G 6: 11,933,873 (GRCm39) probably null Het
Piezo2 A G 18: 63,214,733 (GRCm39) probably null Het
Pja2 T C 17: 64,616,397 (GRCm39) D166G probably benign Het
Ppp1r12c T A 7: 4,485,785 (GRCm39) probably benign Het
Pus3 G C 9: 35,477,874 (GRCm39) G369R probably benign Het
Rhbdf2 T A 11: 116,495,250 (GRCm39) D251V probably damaging Het
Rsad1 A G 11: 94,434,130 (GRCm39) V366A probably benign Het
S100a10 T C 3: 93,471,680 (GRCm39) V88A probably damaging Het
Scarf1 T C 11: 75,406,078 (GRCm39) C121R probably damaging Het
Scn7a A G 2: 66,528,028 (GRCm39) S821P probably damaging Het
Sco1 T C 11: 66,944,605 (GRCm39) V76A probably damaging Het
Sdsl C A 5: 120,601,183 (GRCm39) A30S probably benign Het
Slc26a6 C T 9: 108,733,117 (GRCm39) T32I possibly damaging Het
Slit3 A T 11: 35,579,509 (GRCm39) S1229C probably null Het
Snd1 G T 6: 28,531,403 (GRCm39) probably benign Het
Tdrd3 A G 14: 87,718,221 (GRCm39) T201A probably damaging Het
Tekt1 T C 11: 72,245,645 (GRCm39) N170S probably benign Het
Thsd1 T G 8: 22,733,132 (GRCm39) S60A possibly damaging Het
Tmem121b C T 6: 120,469,841 (GRCm39) G292E probably damaging Het
Trim63 A G 4: 134,048,507 (GRCm39) N172S probably benign Het
Usp24 T C 4: 106,219,209 (GRCm39) probably null Het
Zdhhc16 T A 19: 41,926,553 (GRCm39) probably null Het
Zfp1010 T C 2: 176,956,998 (GRCm39) S167G possibly damaging Het
Zfp709 G A 8: 72,642,906 (GRCm39) V112M probably benign Het
Other mutations in Dennd2a
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01385:Dennd2a APN 6 39,500,070 (GRCm39) missense probably damaging 1.00
IGL01482:Dennd2a APN 6 39,457,243 (GRCm39) missense probably damaging 0.98
IGL02135:Dennd2a APN 6 39,457,205 (GRCm39) nonsense probably null
IGL02206:Dennd2a APN 6 39,500,383 (GRCm39) missense probably damaging 1.00
IGL02649:Dennd2a APN 6 39,447,290 (GRCm39) missense probably benign 0.11
IGL03057:Dennd2a APN 6 39,485,182 (GRCm39) missense probably damaging 0.98
R0310:Dennd2a UTSW 6 39,441,135 (GRCm39) splice site probably benign
R0326:Dennd2a UTSW 6 39,474,044 (GRCm39) missense probably damaging 1.00
R0360:Dennd2a UTSW 6 39,485,233 (GRCm39) missense probably benign 0.13
R0364:Dennd2a UTSW 6 39,485,233 (GRCm39) missense probably benign 0.13
R0394:Dennd2a UTSW 6 39,499,746 (GRCm39) missense possibly damaging 0.92
R0680:Dennd2a UTSW 6 39,459,996 (GRCm39) missense probably damaging 1.00
R1741:Dennd2a UTSW 6 39,470,091 (GRCm39) missense probably damaging 0.99
R1744:Dennd2a UTSW 6 39,457,185 (GRCm39) missense probably benign 0.26
R2070:Dennd2a UTSW 6 39,442,053 (GRCm39) missense probably damaging 1.00
R3833:Dennd2a UTSW 6 39,483,651 (GRCm39) missense probably damaging 0.97
R4120:Dennd2a UTSW 6 39,442,030 (GRCm39) missense probably damaging 0.99
R4583:Dennd2a UTSW 6 39,499,776 (GRCm39) missense probably damaging 1.00
R4842:Dennd2a UTSW 6 39,474,044 (GRCm39) missense probably damaging 1.00
R4887:Dennd2a UTSW 6 39,474,093 (GRCm39) missense probably benign 0.03
R4901:Dennd2a UTSW 6 39,499,621 (GRCm39) missense probably benign 0.00
R5065:Dennd2a UTSW 6 39,472,110 (GRCm39) critical splice donor site probably null
R5413:Dennd2a UTSW 6 39,441,227 (GRCm39) missense probably damaging 1.00
R6181:Dennd2a UTSW 6 39,462,554 (GRCm39) missense probably benign 0.14
R6239:Dennd2a UTSW 6 39,465,750 (GRCm39) missense probably damaging 1.00
R6360:Dennd2a UTSW 6 39,470,076 (GRCm39) missense probably benign 0.01
R7115:Dennd2a UTSW 6 39,483,645 (GRCm39) missense probably damaging 1.00
R7419:Dennd2a UTSW 6 39,500,397 (GRCm39) missense probably damaging 1.00
R7567:Dennd2a UTSW 6 39,499,743 (GRCm39) missense probably benign
R7587:Dennd2a UTSW 6 39,460,069 (GRCm39) missense probably damaging 1.00
R7662:Dennd2a UTSW 6 39,470,037 (GRCm39) missense probably benign 0.03
R7781:Dennd2a UTSW 6 39,470,000 (GRCm39) missense probably damaging 0.99
R7962:Dennd2a UTSW 6 39,457,207 (GRCm39) missense possibly damaging 0.91
R8683:Dennd2a UTSW 6 39,500,137 (GRCm39) nonsense probably null
R8961:Dennd2a UTSW 6 39,462,555 (GRCm39) missense probably damaging 0.96
R9424:Dennd2a UTSW 6 39,485,294 (GRCm39) nonsense probably null
R9765:Dennd2a UTSW 6 39,473,907 (GRCm39) critical splice donor site probably null
R9767:Dennd2a UTSW 6 39,483,709 (GRCm39) missense probably damaging 0.98
X0026:Dennd2a UTSW 6 39,485,301 (GRCm39) missense possibly damaging 0.61
Z1177:Dennd2a UTSW 6 39,500,408 (GRCm39) missense probably benign 0.38
Predicted Primers PCR Primer
(F):5'- CATCAGGAGATGTGCAGTTTG -3'
(R):5'- TGAGAATTAGGATCTGCTGCC -3'

Sequencing Primer
(F):5'- AGATGTGCAGTTTGAATGCAC -3'
(R):5'- CCAATGCCATGGGATTTGAC -3'
Posted On 2015-04-06