Incidental Mutation 'R3846:Silc1'
ID 277381
Institutional Source Beutler Lab
Gene Symbol Silc1
Ensembl Gene ENSMUSG00000094002
Gene Name sciatic injury induced lincRNA upregulator of SOX11
Synonyms Gm9866, EG636791
MMRRC Submission 040894-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.075) question?
Stock # R3846 (G1)
Quality Score 194
Status Validated
Chromosome 12
Chromosomal Location 27190795-27210515 bp(-) (GRCm39)
Type of Mutation exon
DNA Base Change (assembly) T to A at 27210301 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Gene Model predicted gene model for transcript(s):
AlphaFold no structure available at present
Predicted Effect noncoding transcript
Transcript: ENSMUST00000177636
Predicted Effect noncoding transcript
Transcript: ENSMUST00000182473
Predicted Effect noncoding transcript
Transcript: ENSMUST00000182592
Predicted Effect noncoding transcript
Transcript: ENSMUST00000183238
Predicted Effect noncoding transcript
Transcript: ENSMUST00000222838
Predicted Effect noncoding transcript
Transcript: ENSMUST00000222954
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.3%
  • 20x: 95.1%
Validation Efficiency 97% (38/39)
Allele List at MGI
Other mutations in this stock
Total: 37 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930568D16Rik A G 2: 35,244,570 (GRCm39) Y261H probably damaging Het
Acad10 T A 5: 121,772,749 (GRCm39) I511F probably benign Het
Adgb G A 10: 10,258,465 (GRCm39) probably benign Het
Adgrg3 T C 8: 95,767,049 (GRCm39) V468A probably benign Het
Ano4 A T 10: 88,831,114 (GRCm39) I468N possibly damaging Het
Apool A T X: 111,274,155 (GRCm39) probably benign Het
Arhgap32 T C 9: 32,101,320 (GRCm39) V295A probably benign Het
Ccser2 A G 14: 36,662,245 (GRCm39) V313A probably benign Het
Ctnnd1 T C 2: 84,447,271 (GRCm39) I325V probably benign Het
Cubn T C 2: 13,287,819 (GRCm39) D3420G probably damaging Het
Dnah12 A G 14: 26,431,366 (GRCm39) T395A probably benign Het
Dock2 T G 11: 34,623,198 (GRCm39) H65P possibly damaging Het
Fsip2 A T 2: 82,816,759 (GRCm39) Q4164L possibly damaging Het
Gapvd1 A T 2: 34,619,084 (GRCm39) Y96* probably null Het
Gja3 T A 14: 57,273,161 (GRCm39) K404* probably null Het
Hdac1-ps A G 17: 78,800,401 (GRCm39) K464R possibly damaging Het
Hmcn2 A G 2: 31,320,362 (GRCm39) I3948V possibly damaging Het
Hr C T 14: 70,808,893 (GRCm39) R1090W probably damaging Het
Hrnr A G 3: 93,239,464 (GRCm39) H3234R unknown Het
Ifi207 T A 1: 173,562,869 (GRCm39) E92D probably benign Het
Iqgap2 G A 13: 95,810,186 (GRCm39) probably benign Het
Itgax G T 7: 127,732,939 (GRCm39) V273F probably damaging Het
Lamc3 A G 2: 31,814,604 (GRCm39) M1043V probably benign Het
Lgmn T C 12: 102,370,588 (GRCm39) N114S possibly damaging Het
Mov10l1 A G 15: 88,896,345 (GRCm39) N678D possibly damaging Het
Nlrp9c A G 7: 26,081,701 (GRCm39) probably null Het
Notch4 A G 17: 34,797,071 (GRCm39) T940A probably damaging Het
Nudt15 T A 14: 73,760,911 (GRCm39) Q60L probably benign Het
Or10ag56 T C 2: 87,139,526 (GRCm39) V151A probably benign Het
Or52e7 T C 7: 104,684,896 (GRCm39) C164R probably benign Het
Phip G A 9: 82,758,179 (GRCm39) R1505* probably null Het
Ptger2 T G 14: 45,226,784 (GRCm39) S121R probably damaging Het
Scyl2 A T 10: 89,476,403 (GRCm39) F907L probably damaging Het
Trpc4 C A 3: 54,225,433 (GRCm39) F843L probably benign Het
Tysnd1 C T 10: 61,531,867 (GRCm39) S173L possibly damaging Het
Vmn2r124 T A 17: 18,293,953 (GRCm39) V680D possibly damaging Het
Vmn2r91 G A 17: 18,327,860 (GRCm39) V485I probably benign Het
Other mutations in Silc1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01482:Silc1 APN 12 27,191,893 (GRCm39) intron noncoding transcript
R4947:Silc1 UTSW 12 27,210,227 (GRCm39) critical splice donor site noncoding transcript
R5174:Silc1 UTSW 12 27,192,027 (GRCm39) intron noncoding transcript
Predicted Primers PCR Primer
(F):5'- AATCTGCTTCACCGCAACAG -3'
(R):5'- AGAGACAGTTAAAGCTTCCACG -3'

Sequencing Primer
(F):5'- GCCAGCCTCAGCAGAATG -3'
(R):5'- TGAGTTGTACCACACAGCG -3'
Posted On 2015-04-06