Incidental Mutation 'IGL02154:Vmn1r78'
ID |
282162 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Vmn1r78
|
Ensembl Gene |
ENSMUSG00000061602 |
Gene Name |
vomeronasal 1 receptor 78 |
Synonyms |
V1rg7 |
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.070)
|
Stock # |
IGL02154
|
Quality Score |
|
Status
|
|
Chromosome |
7 |
Chromosomal Location |
11886391-11887332 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to G
at 11886472 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Isoleucine to Valine
at position 28
(I28V)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000154797
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000078039]
[ENSMUST00000228244]
[ENSMUST00000228664]
|
AlphaFold |
K7N608 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000078039
AA Change: I28V
PolyPhen 2
Score 0.223 (Sensitivity: 0.91; Specificity: 0.88)
|
SMART Domains |
Protein: ENSMUSP00000077186 Gene: ENSMUSG00000061602 AA Change: I28V
Domain | Start | End | E-Value | Type |
Pfam:TAS2R
|
3 |
304 |
5.7e-8 |
PFAM |
Pfam:V1R
|
12 |
301 |
1.5e-29 |
PFAM |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000209489
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000228244
AA Change: I28V
PolyPhen 2
Score 0.223 (Sensitivity: 0.91; Specificity: 0.88)
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000228664
AA Change: I28V
PolyPhen 2
Score 0.223 (Sensitivity: 0.91; Specificity: 0.88)
|
Coding Region Coverage |
|
Validation Efficiency |
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 32 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Armc3 |
G |
A |
2: 19,290,948 (GRCm39) |
|
probably null |
Het |
Armh4 |
G |
A |
14: 50,010,399 (GRCm39) |
T436I |
possibly damaging |
Het |
AW551984 |
G |
A |
9: 39,500,398 (GRCm39) |
R787C |
possibly damaging |
Het |
Cadm1 |
A |
T |
9: 47,725,201 (GRCm39) |
I321L |
probably benign |
Het |
Cfap57 |
A |
G |
4: 118,470,214 (GRCm39) |
L222P |
probably damaging |
Het |
Cox20 |
A |
G |
1: 178,150,119 (GRCm39) |
I98V |
probably benign |
Het |
Dmrta1 |
A |
G |
4: 89,580,150 (GRCm39) |
N370S |
probably benign |
Het |
Dnah17 |
A |
G |
11: 118,015,087 (GRCm39) |
F386L |
probably benign |
Het |
Fam135b |
T |
C |
15: 71,320,559 (GRCm39) |
I1323V |
probably benign |
Het |
Fndc3b |
A |
G |
3: 27,592,266 (GRCm39) |
S211P |
probably damaging |
Het |
Galnt10 |
T |
G |
11: 57,675,531 (GRCm39) |
L597V |
probably damaging |
Het |
Gtf2e2 |
T |
C |
8: 34,245,989 (GRCm39) |
|
probably null |
Het |
Inpp4b |
T |
A |
8: 82,696,130 (GRCm39) |
|
probably benign |
Het |
Irag2 |
T |
G |
6: 145,083,967 (GRCm39) |
M44R |
possibly damaging |
Het |
Lacc1 |
A |
G |
14: 77,270,727 (GRCm39) |
V269A |
probably benign |
Het |
Mdn1 |
A |
G |
4: 32,740,395 (GRCm39) |
D3750G |
probably benign |
Het |
Mme |
A |
T |
3: 63,250,976 (GRCm39) |
Q339L |
probably benign |
Het |
Mmp3 |
A |
T |
9: 7,453,662 (GRCm39) |
I428L |
probably benign |
Het |
Myrf |
A |
T |
19: 10,193,482 (GRCm39) |
I558N |
probably damaging |
Het |
Or52e8 |
C |
T |
7: 104,625,188 (GRCm39) |
M1I |
probably null |
Het |
Phb1 |
A |
G |
11: 95,565,997 (GRCm39) |
I94V |
possibly damaging |
Het |
Prg4 |
T |
A |
1: 150,330,613 (GRCm39) |
|
probably benign |
Het |
Sirpb1a |
T |
C |
3: 15,475,504 (GRCm39) |
T344A |
probably damaging |
Het |
Skap2 |
T |
C |
6: 51,989,308 (GRCm39) |
|
probably benign |
Het |
Slc29a1 |
A |
G |
17: 45,897,089 (GRCm39) |
I399T |
probably damaging |
Het |
Sorl1 |
C |
T |
9: 41,915,330 (GRCm39) |
V1300I |
probably benign |
Het |
Tas2r117 |
T |
C |
6: 132,780,678 (GRCm39) |
V272A |
probably benign |
Het |
Tctn2 |
C |
A |
5: 124,746,624 (GRCm39) |
|
noncoding transcript |
Het |
Tmem51 |
T |
C |
4: 141,759,089 (GRCm39) |
N220D |
probably damaging |
Het |
Trak2 |
T |
C |
1: 58,947,888 (GRCm39) |
D584G |
probably damaging |
Het |
Vmn2r95 |
A |
C |
17: 18,672,248 (GRCm39) |
I662L |
probably benign |
Het |
Vwa8 |
C |
A |
14: 79,086,733 (GRCm39) |
R4S |
possibly damaging |
Het |
|
Other mutations in Vmn1r78 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01129:Vmn1r78
|
APN |
7 |
11,887,165 (GRCm39) |
missense |
probably benign |
0.10 |
IGL02019:Vmn1r78
|
APN |
7 |
11,886,634 (GRCm39) |
missense |
probably damaging |
0.99 |
IGL02143:Vmn1r78
|
APN |
7 |
11,886,407 (GRCm39) |
missense |
probably benign |
|
IGL02290:Vmn1r78
|
APN |
7 |
11,887,082 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03012:Vmn1r78
|
APN |
7 |
11,887,291 (GRCm39) |
missense |
probably benign |
0.32 |
IGL03256:Vmn1r78
|
APN |
7 |
11,886,725 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03373:Vmn1r78
|
APN |
7 |
11,887,270 (GRCm39) |
missense |
possibly damaging |
0.86 |
IGL03384:Vmn1r78
|
APN |
7 |
11,887,136 (GRCm39) |
missense |
possibly damaging |
0.94 |
R0016:Vmn1r78
|
UTSW |
7 |
11,887,279 (GRCm39) |
missense |
probably benign |
0.02 |
R1445:Vmn1r78
|
UTSW |
7 |
11,886,508 (GRCm39) |
missense |
possibly damaging |
0.64 |
R1748:Vmn1r78
|
UTSW |
7 |
11,887,250 (GRCm39) |
missense |
probably damaging |
1.00 |
R2017:Vmn1r78
|
UTSW |
7 |
11,887,270 (GRCm39) |
missense |
possibly damaging |
0.86 |
R2032:Vmn1r78
|
UTSW |
7 |
11,887,210 (GRCm39) |
missense |
probably benign |
0.00 |
R2198:Vmn1r78
|
UTSW |
7 |
11,886,487 (GRCm39) |
missense |
probably benign |
0.06 |
R4330:Vmn1r78
|
UTSW |
7 |
11,886,386 (GRCm39) |
splice site |
probably null |
|
R4564:Vmn1r78
|
UTSW |
7 |
11,886,485 (GRCm39) |
missense |
probably damaging |
1.00 |
R4769:Vmn1r78
|
UTSW |
7 |
11,886,725 (GRCm39) |
missense |
probably damaging |
1.00 |
R4801:Vmn1r78
|
UTSW |
7 |
11,886,891 (GRCm39) |
nonsense |
probably null |
|
R4802:Vmn1r78
|
UTSW |
7 |
11,886,891 (GRCm39) |
nonsense |
probably null |
|
R4860:Vmn1r78
|
UTSW |
7 |
11,886,683 (GRCm39) |
missense |
probably damaging |
1.00 |
R4860:Vmn1r78
|
UTSW |
7 |
11,886,683 (GRCm39) |
missense |
probably damaging |
1.00 |
R5648:Vmn1r78
|
UTSW |
7 |
11,886,693 (GRCm39) |
missense |
possibly damaging |
0.92 |
R6561:Vmn1r78
|
UTSW |
7 |
11,886,826 (GRCm39) |
missense |
probably damaging |
1.00 |
R6869:Vmn1r78
|
UTSW |
7 |
11,886,676 (GRCm39) |
missense |
probably benign |
0.01 |
R6945:Vmn1r78
|
UTSW |
7 |
11,886,832 (GRCm39) |
missense |
probably benign |
0.01 |
R7793:Vmn1r78
|
UTSW |
7 |
11,887,241 (GRCm39) |
missense |
probably benign |
0.01 |
R7954:Vmn1r78
|
UTSW |
7 |
11,887,227 (GRCm39) |
nonsense |
probably null |
|
R8698:Vmn1r78
|
UTSW |
7 |
11,886,539 (GRCm39) |
missense |
probably benign |
0.06 |
R8830:Vmn1r78
|
UTSW |
7 |
11,887,118 (GRCm39) |
missense |
probably damaging |
0.98 |
R9624:Vmn1r78
|
UTSW |
7 |
11,886,410 (GRCm39) |
missense |
probably benign |
|
Z1088:Vmn1r78
|
UTSW |
7 |
11,886,641 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Posted On |
2015-04-16 |