Incidental Mutation 'IGL02164:Ptgds'
ID 282560
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Ptgds
Ensembl Gene ENSMUSG00000015090
Gene Name prostaglandin D2 synthase (brain)
Synonyms L-PGDS, PGD2, Ptgs3
Accession Numbers
Essential gene? Probably non essential (E-score: 0.087) question?
Stock # IGL02164
Quality Score
Status
Chromosome 2
Chromosomal Location 25356721-25360058 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 25359124 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Tyrosine to Asparagine at position 44 (Y44N)
Ref Sequence ENSEMBL: ENSMUSP00000109897 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000015234] [ENSMUST00000114251] [ENSMUST00000114259]
AlphaFold O09114
Predicted Effect probably damaging
Transcript: ENSMUST00000015234
AA Change: Y44N

PolyPhen 2 Score 0.986 (Sensitivity: 0.74; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000015234
Gene: ENSMUSG00000015090
AA Change: Y44N

DomainStartEndE-ValueType
low complexity region 4 18 N/A INTRINSIC
Pfam:Lipocalin 40 184 4.2e-35 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000114251
AA Change: Y44N

PolyPhen 2 Score 0.986 (Sensitivity: 0.74; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000109889
Gene: ENSMUSG00000015090
AA Change: Y44N

DomainStartEndE-ValueType
low complexity region 4 18 N/A INTRINSIC
Pfam:Lipocalin 40 184 4.2e-35 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000114259
AA Change: Y44N

PolyPhen 2 Score 0.986 (Sensitivity: 0.74; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000109897
Gene: ENSMUSG00000015090
AA Change: Y44N

DomainStartEndE-ValueType
low complexity region 4 18 N/A INTRINSIC
Pfam:Lipocalin 40 184 4.2e-35 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000137417
Predicted Effect noncoding transcript
Transcript: ENSMUST00000144016
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a glutathione-independent prostaglandin D synthase that catalyzes the conversion of prostaglandin H2 (PGH2) to postaglandin D2 (PGD2). PGD2 functions as a neuromodulator as well as a trophic factor in the central nervous system. PGD2 is also involved in smooth muscle contraction/relaxation and is a potent inhibitor of platelet aggregation. This gene is preferentially expressed in brain. Studies with transgenic mice overexpressing this gene suggest that this gene may be also involved in the regulation of non-rapid eye movement sleep. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for one knock-out allele fail to exhibit PGE2- and bicuculline-induced allodynia and exhibit decreased susceptibility to IgE-induced PCA. Mice homozygous for another knock-out allele show normal induction of muscle injury after reperfusion of ischemic skeletal muscle. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 76 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
5730480H06Rik T A 5: 48,537,524 (GRCm39) V187E probably benign Het
Abcc12 T A 8: 87,254,033 (GRCm39) D917V probably damaging Het
Abhd15 A T 11: 77,406,840 (GRCm39) E272D probably benign Het
Adat3 T A 10: 80,442,461 (GRCm39) S100T probably benign Het
Adgrg6 T C 10: 14,399,299 (GRCm39) probably benign Het
Alpl C T 4: 137,481,290 (GRCm39) V121M probably damaging Het
Ano1 A T 7: 144,190,918 (GRCm39) Y388N possibly damaging Het
Arrdc4 C T 7: 68,389,285 (GRCm39) probably benign Het
Asxl2 A G 12: 3,552,079 (GRCm39) M1274V probably benign Het
Bmt2 G T 6: 13,628,878 (GRCm39) N268K possibly damaging Het
Bpifb2 C A 2: 153,725,482 (GRCm39) L176M probably damaging Het
Brd8 C T 18: 34,735,780 (GRCm39) S899N probably damaging Het
Cd14 T C 18: 36,858,838 (GRCm39) R206G possibly damaging Het
Cfap65 G T 1: 74,967,304 (GRCm39) T215K possibly damaging Het
Chd9 T C 8: 91,659,849 (GRCm39) S270P possibly damaging Het
Cidea C T 18: 67,499,581 (GRCm39) S156L probably damaging Het
Col5a3 A G 9: 20,703,939 (GRCm39) probably null Het
Cspg5 T C 9: 110,080,104 (GRCm39) V424A probably damaging Het
Ctc1 A G 11: 68,916,922 (GRCm39) H272R probably damaging Het
D5Ertd579e A T 5: 36,772,303 (GRCm39) S697R probably damaging Het
Dennd3 T C 15: 73,416,297 (GRCm39) S516P probably benign Het
Dipk2b T A X: 18,285,192 (GRCm39) R421* probably null Het
Dlgap4 G A 2: 156,553,059 (GRCm39) R509H probably damaging Het
Dus3l T C 17: 57,074,943 (GRCm39) probably benign Het
Dync1h1 G T 12: 110,628,993 (GRCm39) W4183C probably damaging Het
Eif2s3x A T X: 93,248,678 (GRCm39) M152K possibly damaging Het
Epb41l1 C T 2: 156,336,869 (GRCm39) probably benign Het
Ephx2 A G 14: 66,341,169 (GRCm39) probably benign Het
Fabp12 T A 3: 10,311,075 (GRCm39) Y129F probably damaging Het
Fat3 A G 9: 15,942,720 (GRCm39) probably benign Het
Fat4 T C 3: 39,050,354 (GRCm39) probably null Het
Gnb1 T A 4: 155,641,631 (GRCm39) probably null Het
Gpr107 C A 2: 31,068,298 (GRCm39) Y253* probably null Het
Grb10 C T 11: 11,893,962 (GRCm39) E320K probably damaging Het
Gucy2g G T 19: 55,226,455 (GRCm39) H154N probably benign Het
H2bl1 T C 13: 99,120,715 (GRCm39) K104E probably damaging Het
Hemk1 T A 9: 107,208,735 (GRCm39) H154L probably benign Het
Hk2 A T 6: 82,720,920 (GRCm39) probably null Het
Htr5a A G 5: 28,047,463 (GRCm39) N6S probably damaging Het
Htra3 T C 5: 35,810,410 (GRCm39) D424G probably benign Het
Ift52 A G 2: 162,867,384 (GRCm39) probably null Het
Igdcc4 A G 9: 65,032,064 (GRCm39) probably benign Het
Itpr1 A G 6: 108,366,444 (GRCm39) K124E probably benign Het
Kcnc2 T A 10: 112,291,590 (GRCm39) N259K possibly damaging Het
Kics2 A G 10: 121,586,675 (GRCm39) Y194C probably damaging Het
Lmod2 A T 6: 24,603,909 (GRCm39) I295F possibly damaging Het
Lrp1 T C 10: 127,399,536 (GRCm39) E2324G probably benign Het
Lss T C 10: 76,372,094 (GRCm39) S150P probably damaging Het
Macf1 T C 4: 123,374,065 (GRCm39) N1515S probably benign Het
Mapk11 T C 15: 89,029,651 (GRCm39) probably null Het
Mc3r T A 2: 172,091,314 (GRCm39) F179I probably damaging Het
Mtmr9 T A 14: 63,767,737 (GRCm39) N291Y probably damaging Het
Myo1h T C 5: 114,472,157 (GRCm39) F396L probably damaging Het
Nek2 A G 1: 191,559,416 (GRCm39) K307R probably benign Het
Or12d2 C A 17: 37,624,578 (GRCm39) M232I probably benign Het
Osmr G A 15: 6,871,529 (GRCm39) T296I probably damaging Het
Pcdhb11 T G 18: 37,556,412 (GRCm39) S581A probably benign Het
Pfkp C T 13: 6,647,951 (GRCm39) V542M probably damaging Het
Pmpca C T 2: 26,285,581 (GRCm39) S519L probably benign Het
Raly T A 2: 154,701,849 (GRCm39) Y116* probably null Het
Rock2 A G 12: 17,015,530 (GRCm39) D809G probably damaging Het
Sgsm2 T G 11: 74,756,242 (GRCm39) N369T possibly damaging Het
Slc6a15 A G 10: 103,254,083 (GRCm39) D673G probably benign Het
Spire2 A T 8: 124,059,703 (GRCm39) D67V probably damaging Het
St7l T C 3: 104,829,597 (GRCm39) probably null Het
Stau2 A G 1: 16,416,052 (GRCm39) L469P probably damaging Het
Tefm A G 11: 80,030,915 (GRCm39) L107S probably damaging Het
Ticam1 A T 17: 56,577,019 (GRCm39) V692D unknown Het
Tipin T A 9: 64,201,631 (GRCm39) D143E probably damaging Het
Tmem132c C A 5: 127,613,441 (GRCm39) T448K probably damaging Het
Trav8-1 A T 14: 53,707,213 (GRCm39) M1L unknown Het
Ttn C A 2: 76,569,141 (GRCm39) V27251F probably damaging Het
Uvrag A T 7: 98,653,896 (GRCm39) C31* probably null Het
Zap70 T C 1: 36,810,267 (GRCm39) Y126H probably damaging Het
Zfp644 A G 5: 106,785,965 (GRCm39) V194A probably benign Het
Zfp663 C T 2: 165,200,968 (GRCm39) W22* probably null Het
Other mutations in Ptgds
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL03035:Ptgds APN 2 25,359,622 (GRCm39) missense probably benign 0.06
IGL03036:Ptgds APN 2 25,359,622 (GRCm39) missense probably benign 0.06
IGL03117:Ptgds APN 2 25,359,622 (GRCm39) missense probably benign 0.06
IGL03352:Ptgds APN 2 25,359,622 (GRCm39) missense probably benign 0.06
IGL03354:Ptgds APN 2 25,359,622 (GRCm39) missense probably benign 0.06
R0780:Ptgds UTSW 2 25,358,104 (GRCm39) missense possibly damaging 0.90
R0885:Ptgds UTSW 2 25,357,357 (GRCm39) missense possibly damaging 0.80
R4820:Ptgds UTSW 2 25,359,058 (GRCm39) missense probably benign 0.02
R7000:Ptgds UTSW 2 25,357,828 (GRCm39) critical splice donor site probably null
R7522:Ptgds UTSW 2 25,357,920 (GRCm39) missense probably benign 0.38
R8401:Ptgds UTSW 2 25,359,669 (GRCm39) missense unknown
R9794:Ptgds UTSW 2 25,359,129 (GRCm39) missense probably benign 0.05
Posted On 2015-04-16