Incidental Mutation 'IGL02185:Pum2'
ID |
283612 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Pum2
|
Ensembl Gene |
ENSMUSG00000020594 |
Gene Name |
pumilio RNA-binding family member 2 |
Synonyms |
Pumm2, 5730503J23Rik |
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
IGL02185
|
Quality Score |
|
Status
|
|
Chromosome |
12 |
Chromosomal Location |
8724134-8802581 bp(+) (GRCm39) |
Type of Mutation |
critical splice donor site (2 bp from exon) |
DNA Base Change (assembly) |
T to C
at 8798955 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
|
Ref Sequence |
ENSEMBL: ENSMUSP00000137020
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000020915]
[ENSMUST00000111122]
[ENSMUST00000111123]
[ENSMUST00000163569]
[ENSMUST00000165293]
[ENSMUST00000168361]
[ENSMUST00000169089]
[ENSMUST00000178015]
|
AlphaFold |
Q80U58 |
Predicted Effect |
probably null
Transcript: ENSMUST00000020915
|
SMART Domains |
Protein: ENSMUSP00000020915 Gene: ENSMUSG00000020594
Domain | Start | End | E-Value | Type |
low complexity region
|
193 |
206 |
N/A |
INTRINSIC |
low complexity region
|
269 |
290 |
N/A |
INTRINSIC |
low complexity region
|
319 |
336 |
N/A |
INTRINSIC |
low complexity region
|
353 |
378 |
N/A |
INTRINSIC |
low complexity region
|
464 |
490 |
N/A |
INTRINSIC |
low complexity region
|
498 |
509 |
N/A |
INTRINSIC |
low complexity region
|
521 |
535 |
N/A |
INTRINSIC |
low complexity region
|
542 |
576 |
N/A |
INTRINSIC |
low complexity region
|
591 |
609 |
N/A |
INTRINSIC |
Pumilio
|
642 |
677 |
2.35e-7 |
SMART |
Pumilio
|
678 |
713 |
6.54e-6 |
SMART |
Pumilio
|
714 |
749 |
2.89e-7 |
SMART |
Pumilio
|
750 |
785 |
3.37e-8 |
SMART |
Pumilio
|
786 |
821 |
4.84e-9 |
SMART |
Pumilio
|
822 |
857 |
3.2e-9 |
SMART |
Pumilio
|
858 |
893 |
5.78e-7 |
SMART |
Pumilio
|
901 |
936 |
3.62e-8 |
SMART |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000111122
|
SMART Domains |
Protein: ENSMUSP00000106751 Gene: ENSMUSG00000020594
Domain | Start | End | E-Value | Type |
low complexity region
|
193 |
206 |
N/A |
INTRINSIC |
low complexity region
|
269 |
290 |
N/A |
INTRINSIC |
low complexity region
|
324 |
341 |
N/A |
INTRINSIC |
low complexity region
|
358 |
383 |
N/A |
INTRINSIC |
low complexity region
|
469 |
495 |
N/A |
INTRINSIC |
low complexity region
|
503 |
514 |
N/A |
INTRINSIC |
low complexity region
|
526 |
540 |
N/A |
INTRINSIC |
low complexity region
|
547 |
602 |
N/A |
INTRINSIC |
low complexity region
|
630 |
660 |
N/A |
INTRINSIC |
low complexity region
|
675 |
693 |
N/A |
INTRINSIC |
Pumilio
|
726 |
761 |
2.35e-7 |
SMART |
Pumilio
|
762 |
797 |
6.54e-6 |
SMART |
Pumilio
|
798 |
833 |
2.89e-7 |
SMART |
Pumilio
|
834 |
869 |
3.37e-8 |
SMART |
Pumilio
|
870 |
905 |
4.84e-9 |
SMART |
Pumilio
|
906 |
941 |
3.2e-9 |
SMART |
Pumilio
|
942 |
977 |
5.78e-7 |
SMART |
Pumilio
|
985 |
1020 |
3.62e-8 |
SMART |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000111123
|
SMART Domains |
Protein: ENSMUSP00000106752 Gene: ENSMUSG00000020594
Domain | Start | End | E-Value | Type |
low complexity region
|
193 |
206 |
N/A |
INTRINSIC |
low complexity region
|
269 |
290 |
N/A |
INTRINSIC |
low complexity region
|
324 |
341 |
N/A |
INTRINSIC |
low complexity region
|
358 |
383 |
N/A |
INTRINSIC |
low complexity region
|
469 |
495 |
N/A |
INTRINSIC |
low complexity region
|
503 |
514 |
N/A |
INTRINSIC |
low complexity region
|
526 |
540 |
N/A |
INTRINSIC |
low complexity region
|
547 |
602 |
N/A |
INTRINSIC |
low complexity region
|
630 |
660 |
N/A |
INTRINSIC |
low complexity region
|
675 |
693 |
N/A |
INTRINSIC |
Pumilio
|
726 |
761 |
2.35e-7 |
SMART |
Pumilio
|
762 |
797 |
6.54e-6 |
SMART |
Pumilio
|
798 |
833 |
2.89e-7 |
SMART |
Pumilio
|
834 |
869 |
3.37e-8 |
SMART |
Pumilio
|
870 |
905 |
4.84e-9 |
SMART |
Pumilio
|
906 |
941 |
3.2e-9 |
SMART |
Pumilio
|
942 |
977 |
5.78e-7 |
SMART |
Pumilio
|
985 |
1020 |
3.62e-8 |
SMART |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000163569
|
SMART Domains |
Protein: ENSMUSP00000131074 Gene: ENSMUSG00000020594
Domain | Start | End | E-Value | Type |
low complexity region
|
193 |
206 |
N/A |
INTRINSIC |
low complexity region
|
269 |
290 |
N/A |
INTRINSIC |
low complexity region
|
324 |
341 |
N/A |
INTRINSIC |
low complexity region
|
358 |
383 |
N/A |
INTRINSIC |
low complexity region
|
469 |
495 |
N/A |
INTRINSIC |
low complexity region
|
503 |
514 |
N/A |
INTRINSIC |
low complexity region
|
526 |
540 |
N/A |
INTRINSIC |
low complexity region
|
547 |
602 |
N/A |
INTRINSIC |
low complexity region
|
630 |
660 |
N/A |
INTRINSIC |
low complexity region
|
675 |
693 |
N/A |
INTRINSIC |
Pumilio
|
726 |
761 |
2.35e-7 |
SMART |
Pumilio
|
762 |
797 |
6.54e-6 |
SMART |
Pumilio
|
798 |
832 |
1.29e-4 |
SMART |
Pumilio
|
836 |
871 |
3.37e-8 |
SMART |
Pumilio
|
872 |
907 |
4.84e-9 |
SMART |
Pumilio
|
908 |
943 |
3.2e-9 |
SMART |
Pumilio
|
944 |
979 |
5.78e-7 |
SMART |
Pumilio
|
987 |
1022 |
3.62e-8 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000164818
|
SMART Domains |
Protein: ENSMUSP00000129243 Gene: ENSMUSG00000020594
Domain | Start | End | E-Value | Type |
low complexity region
|
24 |
42 |
N/A |
INTRINSIC |
Pumilio
|
75 |
110 |
2.35e-7 |
SMART |
Pumilio
|
111 |
139 |
1.58e1 |
SMART |
Pumilio
|
140 |
175 |
3.37e-8 |
SMART |
Pumilio
|
176 |
211 |
4.84e-9 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000165293
|
Predicted Effect |
probably null
Transcript: ENSMUST00000168361
|
SMART Domains |
Protein: ENSMUSP00000128292 Gene: ENSMUSG00000020594
Domain | Start | End | E-Value | Type |
low complexity region
|
193 |
206 |
N/A |
INTRINSIC |
low complexity region
|
269 |
290 |
N/A |
INTRINSIC |
low complexity region
|
324 |
341 |
N/A |
INTRINSIC |
low complexity region
|
358 |
383 |
N/A |
INTRINSIC |
low complexity region
|
469 |
495 |
N/A |
INTRINSIC |
low complexity region
|
503 |
514 |
N/A |
INTRINSIC |
low complexity region
|
526 |
540 |
N/A |
INTRINSIC |
low complexity region
|
547 |
602 |
N/A |
INTRINSIC |
low complexity region
|
630 |
660 |
N/A |
INTRINSIC |
low complexity region
|
675 |
693 |
N/A |
INTRINSIC |
Pumilio
|
726 |
761 |
2.35e-7 |
SMART |
Pumilio
|
762 |
797 |
6.54e-6 |
SMART |
Pumilio
|
798 |
832 |
1.29e-4 |
SMART |
Pumilio
|
836 |
871 |
3.37e-8 |
SMART |
Pumilio
|
872 |
907 |
4.84e-9 |
SMART |
Pumilio
|
908 |
943 |
3.2e-9 |
SMART |
Pumilio
|
944 |
979 |
5.78e-7 |
SMART |
Pumilio
|
987 |
1022 |
3.62e-8 |
SMART |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000169089
|
SMART Domains |
Protein: ENSMUSP00000132122 Gene: ENSMUSG00000020594
Domain | Start | End | E-Value | Type |
low complexity region
|
193 |
206 |
N/A |
INTRINSIC |
low complexity region
|
269 |
290 |
N/A |
INTRINSIC |
low complexity region
|
324 |
341 |
N/A |
INTRINSIC |
low complexity region
|
358 |
383 |
N/A |
INTRINSIC |
low complexity region
|
469 |
495 |
N/A |
INTRINSIC |
low complexity region
|
503 |
514 |
N/A |
INTRINSIC |
low complexity region
|
526 |
540 |
N/A |
INTRINSIC |
low complexity region
|
547 |
581 |
N/A |
INTRINSIC |
low complexity region
|
596 |
614 |
N/A |
INTRINSIC |
Pumilio
|
647 |
682 |
2.35e-7 |
SMART |
Pumilio
|
683 |
718 |
6.54e-6 |
SMART |
Pumilio
|
719 |
754 |
2.89e-7 |
SMART |
Pumilio
|
755 |
790 |
3.37e-8 |
SMART |
Pumilio
|
791 |
826 |
4.84e-9 |
SMART |
Pumilio
|
827 |
862 |
3.2e-9 |
SMART |
Pumilio
|
863 |
898 |
5.78e-7 |
SMART |
Pumilio
|
906 |
941 |
3.62e-8 |
SMART |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000178015
|
SMART Domains |
Protein: ENSMUSP00000137020 Gene: ENSMUSG00000020594
Domain | Start | End | E-Value | Type |
low complexity region
|
193 |
206 |
N/A |
INTRINSIC |
low complexity region
|
269 |
290 |
N/A |
INTRINSIC |
low complexity region
|
324 |
341 |
N/A |
INTRINSIC |
low complexity region
|
358 |
383 |
N/A |
INTRINSIC |
low complexity region
|
469 |
495 |
N/A |
INTRINSIC |
low complexity region
|
503 |
514 |
N/A |
INTRINSIC |
low complexity region
|
526 |
540 |
N/A |
INTRINSIC |
low complexity region
|
547 |
581 |
N/A |
INTRINSIC |
low complexity region
|
596 |
614 |
N/A |
INTRINSIC |
Pumilio
|
647 |
682 |
2.35e-7 |
SMART |
Pumilio
|
683 |
718 |
6.54e-6 |
SMART |
Pumilio
|
719 |
754 |
2.89e-7 |
SMART |
Pumilio
|
755 |
790 |
3.37e-8 |
SMART |
Pumilio
|
791 |
826 |
4.84e-9 |
SMART |
Pumilio
|
827 |
862 |
3.2e-9 |
SMART |
Pumilio
|
863 |
898 |
5.78e-7 |
SMART |
Pumilio
|
906 |
941 |
3.62e-8 |
SMART |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000171608
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that belongs to a family of RNA-binding proteins. The encoded protein functions as a translational repressor during embryonic development and cell differentiation. This protein is also thought to be a positive regulator of cell proliferation in adipose-derived stem cells. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Sep 2013] PHENOTYPE: Mice homozygous for a gene trapped allele exhibit significantly smaller testes and seminiferous tubule degeneration but are otherwise viable and fertile. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 37 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Adh5 |
A |
G |
3: 138,156,815 (GRCm39) |
D167G |
probably benign |
Het |
C9orf72 |
A |
T |
4: 35,197,046 (GRCm39) |
W340R |
probably damaging |
Het |
Cand2 |
G |
A |
6: 115,766,471 (GRCm39) |
A359T |
probably benign |
Het |
Cnnm2 |
T |
C |
19: 46,751,434 (GRCm39) |
V408A |
probably benign |
Het |
Eloa |
A |
G |
4: 135,740,290 (GRCm39) |
|
probably benign |
Het |
Ern2 |
T |
C |
7: 121,772,598 (GRCm39) |
|
probably benign |
Het |
Hs6st3 |
A |
G |
14: 120,106,296 (GRCm39) |
|
probably null |
Het |
Hydin |
A |
T |
8: 111,233,108 (GRCm39) |
I1736F |
possibly damaging |
Het |
Ifrd2 |
A |
T |
9: 107,468,290 (GRCm39) |
I253F |
probably benign |
Het |
Kctd7 |
G |
A |
5: 130,181,299 (GRCm39) |
V241I |
possibly damaging |
Het |
Lcp1 |
T |
C |
14: 75,466,740 (GRCm39) |
F616L |
possibly damaging |
Het |
Lyst |
C |
T |
13: 13,835,678 (GRCm39) |
Q1787* |
probably null |
Het |
Mapkbp1 |
A |
T |
2: 119,845,144 (GRCm39) |
T342S |
possibly damaging |
Het |
Mcph1 |
A |
G |
8: 18,719,006 (GRCm39) |
|
probably benign |
Het |
Mctp2 |
T |
C |
7: 71,730,571 (GRCm39) |
H868R |
probably benign |
Het |
Mefv |
T |
C |
16: 3,533,714 (GRCm39) |
T186A |
probably benign |
Het |
Nol9 |
T |
A |
4: 152,142,368 (GRCm39) |
I666N |
probably damaging |
Het |
Or51t4 |
T |
A |
7: 102,597,721 (GRCm39) |
N16K |
probably damaging |
Het |
Or6c205 |
G |
T |
10: 129,086,904 (GRCm39) |
C167F |
possibly damaging |
Het |
Or8b8 |
A |
C |
9: 37,809,531 (GRCm39) |
Y277S |
probably damaging |
Het |
Rpgrip1 |
A |
C |
14: 52,349,685 (GRCm39) |
K24N |
possibly damaging |
Het |
Ryr3 |
T |
A |
2: 112,797,548 (GRCm39) |
T122S |
probably damaging |
Het |
Sfn |
A |
G |
4: 133,328,636 (GRCm39) |
S149P |
probably benign |
Het |
Slc27a2 |
T |
A |
2: 126,409,736 (GRCm39) |
V306D |
probably damaging |
Het |
Slc35a1 |
A |
G |
4: 34,675,584 (GRCm39) |
V81A |
probably benign |
Het |
Trav21-dv12 |
A |
T |
14: 54,113,955 (GRCm39) |
D25V |
probably benign |
Het |
Ttn |
T |
C |
2: 76,598,878 (GRCm39) |
H11018R |
possibly damaging |
Het |
Txn1 |
A |
T |
4: 57,950,883 (GRCm39) |
Y49N |
probably benign |
Het |
Ulk2 |
C |
T |
11: 61,672,886 (GRCm39) |
A903T |
probably damaging |
Het |
Vmn2r77 |
G |
A |
7: 86,444,360 (GRCm39) |
M4I |
unknown |
Het |
Vmn2r85 |
G |
T |
10: 130,254,561 (GRCm39) |
L708I |
probably benign |
Het |
Vmn2r9 |
G |
A |
5: 108,991,502 (GRCm39) |
L620F |
probably damaging |
Het |
Vrk2 |
T |
A |
11: 26,485,638 (GRCm39) |
R117* |
probably null |
Het |
Xpo6 |
A |
T |
7: 125,712,980 (GRCm39) |
|
probably benign |
Het |
Zdhhc14 |
C |
A |
17: 5,803,157 (GRCm39) |
T420K |
probably benign |
Het |
Zfp334 |
G |
T |
2: 165,228,869 (GRCm39) |
|
probably benign |
Het |
Zfp958 |
T |
A |
8: 4,678,990 (GRCm39) |
C338* |
probably null |
Het |
|
Other mutations in Pum2 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00737:Pum2
|
APN |
12 |
8,783,381 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02118:Pum2
|
APN |
12 |
8,779,117 (GRCm39) |
missense |
probably benign |
0.31 |
IGL02528:Pum2
|
APN |
12 |
8,778,696 (GRCm39) |
nonsense |
probably null |
|
IGL02718:Pum2
|
APN |
12 |
8,783,344 (GRCm39) |
missense |
probably benign |
0.02 |
Plumbat
|
UTSW |
12 |
8,778,779 (GRCm39) |
critical splice donor site |
probably null |
|
Pummie
|
UTSW |
12 |
8,763,906 (GRCm39) |
nonsense |
probably null |
|
Yorkshire
|
UTSW |
12 |
8,778,726 (GRCm39) |
nonsense |
probably null |
|
PIT4366001:Pum2
|
UTSW |
12 |
8,783,390 (GRCm39) |
missense |
probably damaging |
1.00 |
R0152:Pum2
|
UTSW |
12 |
8,778,754 (GRCm39) |
missense |
possibly damaging |
0.94 |
R0317:Pum2
|
UTSW |
12 |
8,778,754 (GRCm39) |
missense |
possibly damaging |
0.94 |
R0357:Pum2
|
UTSW |
12 |
8,771,785 (GRCm39) |
missense |
possibly damaging |
0.92 |
R0413:Pum2
|
UTSW |
12 |
8,763,464 (GRCm39) |
missense |
probably benign |
0.00 |
R0494:Pum2
|
UTSW |
12 |
8,771,736 (GRCm39) |
nonsense |
probably null |
|
R0520:Pum2
|
UTSW |
12 |
8,771,710 (GRCm39) |
missense |
probably damaging |
1.00 |
R0727:Pum2
|
UTSW |
12 |
8,794,465 (GRCm39) |
missense |
probably damaging |
1.00 |
R1576:Pum2
|
UTSW |
12 |
8,763,524 (GRCm39) |
missense |
probably benign |
0.01 |
R2035:Pum2
|
UTSW |
12 |
8,778,638 (GRCm39) |
nonsense |
probably null |
|
R2060:Pum2
|
UTSW |
12 |
8,778,726 (GRCm39) |
nonsense |
probably null |
|
R2422:Pum2
|
UTSW |
12 |
8,798,931 (GRCm39) |
missense |
possibly damaging |
0.70 |
R2437:Pum2
|
UTSW |
12 |
8,794,654 (GRCm39) |
missense |
probably benign |
0.19 |
R3767:Pum2
|
UTSW |
12 |
8,769,076 (GRCm39) |
nonsense |
probably null |
|
R4715:Pum2
|
UTSW |
12 |
8,797,272 (GRCm39) |
missense |
probably damaging |
1.00 |
R5155:Pum2
|
UTSW |
12 |
8,763,572 (GRCm39) |
missense |
possibly damaging |
0.79 |
R5226:Pum2
|
UTSW |
12 |
8,763,458 (GRCm39) |
missense |
possibly damaging |
0.73 |
R5323:Pum2
|
UTSW |
12 |
8,794,706 (GRCm39) |
missense |
probably damaging |
1.00 |
R6250:Pum2
|
UTSW |
12 |
8,794,755 (GRCm39) |
splice site |
probably null |
|
R6253:Pum2
|
UTSW |
12 |
8,798,205 (GRCm39) |
missense |
probably damaging |
1.00 |
R6508:Pum2
|
UTSW |
12 |
8,798,861 (GRCm39) |
missense |
probably benign |
0.17 |
R6953:Pum2
|
UTSW |
12 |
8,778,779 (GRCm39) |
critical splice donor site |
probably null |
|
R7135:Pum2
|
UTSW |
12 |
8,778,952 (GRCm39) |
missense |
possibly damaging |
0.80 |
R7355:Pum2
|
UTSW |
12 |
8,763,906 (GRCm39) |
nonsense |
probably null |
|
R7586:Pum2
|
UTSW |
12 |
8,797,206 (GRCm39) |
missense |
probably damaging |
1.00 |
R7683:Pum2
|
UTSW |
12 |
8,778,922 (GRCm39) |
missense |
possibly damaging |
0.93 |
R7869:Pum2
|
UTSW |
12 |
8,763,595 (GRCm39) |
missense |
probably benign |
0.00 |
R7873:Pum2
|
UTSW |
12 |
8,798,802 (GRCm39) |
missense |
possibly damaging |
0.94 |
R7980:Pum2
|
UTSW |
12 |
8,763,904 (GRCm39) |
missense |
probably damaging |
0.98 |
R8166:Pum2
|
UTSW |
12 |
8,771,739 (GRCm39) |
missense |
possibly damaging |
0.71 |
R8316:Pum2
|
UTSW |
12 |
8,763,456 (GRCm39) |
missense |
possibly damaging |
0.89 |
R8345:Pum2
|
UTSW |
12 |
8,759,454 (GRCm39) |
missense |
probably damaging |
0.99 |
R8418:Pum2
|
UTSW |
12 |
8,760,245 (GRCm39) |
missense |
possibly damaging |
0.87 |
R8802:Pum2
|
UTSW |
12 |
8,778,726 (GRCm39) |
nonsense |
probably null |
|
R9039:Pum2
|
UTSW |
12 |
8,794,430 (GRCm39) |
missense |
probably damaging |
1.00 |
R9207:Pum2
|
UTSW |
12 |
8,763,904 (GRCm39) |
missense |
probably damaging |
0.98 |
R9366:Pum2
|
UTSW |
12 |
8,783,344 (GRCm39) |
missense |
probably benign |
0.02 |
R9700:Pum2
|
UTSW |
12 |
8,779,044 (GRCm39) |
missense |
probably damaging |
0.97 |
X0039:Pum2
|
UTSW |
12 |
8,778,944 (GRCm39) |
small deletion |
probably benign |
|
|
Posted On |
2015-04-16 |