Incidental Mutation 'IGL02273:Trmt44'
ID |
287249 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Trmt44
|
Ensembl Gene |
ENSMUSG00000029097 |
Gene Name |
tRNA methyltransferase 44 |
Synonyms |
2310079F23Rik |
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.111)
|
Stock # |
IGL02273
|
Quality Score |
|
Status
|
|
Chromosome |
5 |
Chromosomal Location |
35713547-35732414 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to C
at 35731457 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Tyrosine to Cysteine
at position 190
(Y190C)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000030980
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000030980]
|
AlphaFold |
Q9D2Q2 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000030980
AA Change: Y190C
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000030980 Gene: ENSMUSG00000029097 AA Change: Y190C
Domain | Start | End | E-Value | Type |
Pfam:AdoMet_MTase
|
252 |
363 |
3.1e-42 |
PFAM |
low complexity region
|
524 |
540 |
N/A |
INTRINSIC |
|
Predicted Effect |
unknown
Transcript: ENSMUST00000128195
AA Change: Y66C
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000145930
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a putative tRNA methyltransferase found in the cytoplasm. Defects in this gene may be a cause of partial epilepsy with pericentral spikes (PEPS), but that has not been proven definitively. [provided by RefSeq, May 2012]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 41 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
4930451I11Rik |
T |
C |
7: 126,429,931 (GRCm39) |
T89A |
probably benign |
Het |
Amhr2 |
T |
C |
15: 102,360,924 (GRCm39) |
V353A |
probably benign |
Het |
Bbox1 |
A |
T |
2: 110,105,961 (GRCm39) |
Y194* |
probably null |
Het |
Bltp1 |
T |
A |
3: 36,975,586 (GRCm39) |
|
probably benign |
Het |
Bnipl |
C |
A |
3: 95,153,086 (GRCm39) |
R131L |
possibly damaging |
Het |
Casp8ap2 |
T |
C |
4: 32,643,974 (GRCm39) |
S1016P |
probably damaging |
Het |
Cblb |
A |
G |
16: 51,867,657 (GRCm39) |
I88M |
possibly damaging |
Het |
Cyp24a1 |
A |
T |
2: 170,338,278 (GRCm39) |
Y89N |
probably damaging |
Het |
Ddx25 |
G |
T |
9: 35,458,122 (GRCm39) |
N332K |
possibly damaging |
Het |
Dnaaf5 |
C |
T |
5: 139,163,671 (GRCm39) |
Q348* |
probably null |
Het |
Dnah3 |
A |
T |
7: 119,550,494 (GRCm39) |
I3264N |
probably damaging |
Het |
Eml4 |
T |
A |
17: 83,763,808 (GRCm39) |
|
probably null |
Het |
Farsa |
C |
T |
8: 85,594,455 (GRCm39) |
A368V |
probably damaging |
Het |
Fat1 |
T |
C |
8: 45,403,368 (GRCm39) |
Y40H |
probably damaging |
Het |
Glt1d1 |
T |
A |
5: 127,734,208 (GRCm39) |
|
probably benign |
Het |
Gm5422 |
A |
G |
10: 31,126,003 (GRCm39) |
|
noncoding transcript |
Het |
Gpr135 |
A |
G |
12: 72,116,732 (GRCm39) |
I345T |
probably damaging |
Het |
Hmcn2 |
G |
A |
2: 31,314,389 (GRCm39) |
V3616I |
probably benign |
Het |
Kif9 |
A |
T |
9: 110,339,538 (GRCm39) |
K460M |
probably damaging |
Het |
Ldhd |
T |
C |
8: 112,353,922 (GRCm39) |
E426G |
probably benign |
Het |
Mdh1 |
A |
T |
11: 21,509,786 (GRCm39) |
N196K |
probably benign |
Het |
Nfkb1 |
A |
T |
3: 135,310,968 (GRCm39) |
C444S |
probably benign |
Het |
Pfkfb2 |
G |
A |
1: 130,635,319 (GRCm39) |
R81C |
probably damaging |
Het |
Pfpl |
T |
C |
19: 12,407,327 (GRCm39) |
V526A |
possibly damaging |
Het |
Phf20l1 |
T |
A |
15: 66,511,874 (GRCm39) |
V951E |
probably damaging |
Het |
Pik3cg |
A |
T |
12: 32,226,809 (GRCm39) |
L1026Q |
probably damaging |
Het |
Pms1 |
T |
C |
1: 53,247,156 (GRCm39) |
N263S |
probably damaging |
Het |
Prkcb |
T |
A |
7: 122,226,990 (GRCm39) |
F659I |
probably damaging |
Het |
Prr14 |
A |
G |
7: 127,075,108 (GRCm39) |
I69M |
probably damaging |
Het |
Rita1 |
C |
T |
5: 120,747,858 (GRCm39) |
A147T |
probably damaging |
Het |
Senp5 |
T |
C |
16: 31,808,690 (GRCm39) |
H161R |
probably benign |
Het |
Spc25 |
A |
G |
2: 69,035,273 (GRCm39) |
|
probably benign |
Het |
Spty2d1 |
A |
G |
7: 46,647,321 (GRCm39) |
V536A |
probably damaging |
Het |
Susd2 |
A |
G |
10: 75,476,772 (GRCm39) |
S84P |
possibly damaging |
Het |
Tacc1 |
A |
C |
8: 25,649,797 (GRCm39) |
L768V |
probably damaging |
Het |
Tbpl2 |
A |
T |
2: 23,986,531 (GRCm39) |
I5N |
probably benign |
Het |
Tmc2 |
A |
G |
2: 130,071,126 (GRCm39) |
D285G |
probably damaging |
Het |
Tns3 |
A |
T |
11: 8,384,531 (GRCm39) |
V1429E |
probably damaging |
Het |
Ubr4 |
G |
A |
4: 139,199,889 (GRCm39) |
R4591H |
possibly damaging |
Het |
Zfc3h1 |
T |
A |
10: 115,263,004 (GRCm39) |
D1739E |
probably benign |
Het |
Zfp26 |
A |
G |
9: 20,352,744 (GRCm39) |
V107A |
probably damaging |
Het |
|
Other mutations in Trmt44 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01325:Trmt44
|
APN |
5 |
35,726,147 (GRCm39) |
missense |
possibly damaging |
0.61 |
IGL02139:Trmt44
|
APN |
5 |
35,726,143 (GRCm39) |
nonsense |
probably null |
|
IGL02223:Trmt44
|
APN |
5 |
35,731,989 (GRCm39) |
missense |
probably benign |
0.00 |
IGL02667:Trmt44
|
APN |
5 |
35,728,396 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03144:Trmt44
|
APN |
5 |
35,721,766 (GRCm39) |
missense |
probably benign |
0.27 |
R0207:Trmt44
|
UTSW |
5 |
35,730,261 (GRCm39) |
missense |
possibly damaging |
0.95 |
R0540:Trmt44
|
UTSW |
5 |
35,726,103 (GRCm39) |
critical splice donor site |
probably null |
|
R0607:Trmt44
|
UTSW |
5 |
35,726,103 (GRCm39) |
critical splice donor site |
probably null |
|
R1681:Trmt44
|
UTSW |
5 |
35,727,321 (GRCm39) |
missense |
probably benign |
0.13 |
R1746:Trmt44
|
UTSW |
5 |
35,721,403 (GRCm39) |
missense |
probably benign |
0.00 |
R2128:Trmt44
|
UTSW |
5 |
35,732,176 (GRCm39) |
missense |
probably benign |
0.05 |
R4190:Trmt44
|
UTSW |
5 |
35,732,314 (GRCm39) |
missense |
possibly damaging |
0.60 |
R4611:Trmt44
|
UTSW |
5 |
35,732,351 (GRCm39) |
missense |
probably benign |
0.13 |
R4684:Trmt44
|
UTSW |
5 |
35,715,387 (GRCm39) |
missense |
probably benign |
0.07 |
R5114:Trmt44
|
UTSW |
5 |
35,722,812 (GRCm39) |
missense |
possibly damaging |
0.67 |
R5951:Trmt44
|
UTSW |
5 |
35,730,032 (GRCm39) |
unclassified |
probably benign |
|
R6125:Trmt44
|
UTSW |
5 |
35,722,842 (GRCm39) |
missense |
probably damaging |
1.00 |
R7131:Trmt44
|
UTSW |
5 |
35,728,410 (GRCm39) |
missense |
probably damaging |
1.00 |
R7239:Trmt44
|
UTSW |
5 |
35,732,130 (GRCm39) |
missense |
probably benign |
0.00 |
R7265:Trmt44
|
UTSW |
5 |
35,721,647 (GRCm39) |
missense |
probably benign |
0.13 |
R7561:Trmt44
|
UTSW |
5 |
35,715,336 (GRCm39) |
missense |
possibly damaging |
0.47 |
R8543:Trmt44
|
UTSW |
5 |
35,732,374 (GRCm39) |
missense |
probably benign |
0.01 |
R8552:Trmt44
|
UTSW |
5 |
35,722,744 (GRCm39) |
missense |
probably benign |
0.04 |
R8560:Trmt44
|
UTSW |
5 |
35,715,295 (GRCm39) |
missense |
probably benign |
0.00 |
R8850:Trmt44
|
UTSW |
5 |
35,721,673 (GRCm39) |
missense |
probably benign |
0.02 |
R9209:Trmt44
|
UTSW |
5 |
35,731,422 (GRCm39) |
critical splice donor site |
probably null |
|
R9330:Trmt44
|
UTSW |
5 |
35,727,264 (GRCm39) |
missense |
probably damaging |
1.00 |
R9588:Trmt44
|
UTSW |
5 |
35,727,256 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Posted On |
2015-04-16 |