Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02331:Isg20l2'

288656

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Isg20l2

Ensembl Gene

ENSMUSG00000048039

Gene Name

interferon stimulated exonuclease gene 20-like 2

Synonyms

Accession Numbers

Essential gene?

Probably essential (E-score: 0.953) question?

Stock #

IGL02331

Quality Score

Status

Chromosome

Chromosomal Location

87837621-87847993 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 87839394 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Leucine at position 202 (V202L)

Ref Sequence

ENSEMBL: ENSMUSP00000059783 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000005016] [ENSMUST00000055984] [ENSMUST00000160074] [ENSMUST00000160143] [ENSMUST00000160648] [ENSMUST00000164439]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000005016

SMART Domains

Protein: ENSMUSP00000005016
Gene: ENSMUSG00000004896

Domain	Start	End	E-Value	Type
Pfam:Methyltransf_32	133	293	1.5e-29	PFAM
low complexity region	385	402	N/A	INTRINSIC
low complexity region	412	426	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000055984
AA Change: V202L

PolyPhen 2 Score 0.989 (Sensitivity: 0.72; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000059783
Gene: ENSMUSG00000048039
AA Change: V202L

Domain	Start	End	E-Value	Type
low complexity region	128	145	N/A	INTRINSIC
low complexity region	157	168	N/A	INTRINSIC
EXOIII	193	359	3.34e-38	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000159091

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000159831

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000159967

Predicted Effect

probably benign
Transcript: ENSMUST00000160074

SMART Domains

Protein: ENSMUSP00000125365
Gene: ENSMUSG00000004896

Domain	Start	End	E-Value	Type
Pfam:Methyltransf_32	69	229	1.3e-29	PFAM
low complexity region	321	338	N/A	INTRINSIC
low complexity region	348	362	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000160143

SMART Domains

Protein: ENSMUSP00000124113
Gene: ENSMUSG00000004896

Domain	Start	End	E-Value	Type
Pfam:Methyltransf_32	133	247	5e-15	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000161014

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000161471

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000168070

Predicted Effect

probably benign
Transcript: ENSMUST00000160648

Predicted Effect

probably benign
Transcript: ENSMUST00000164439

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a 3'-5' exoribonuclease that may be involved in the processing of the 12S pre-rRNA. Pseudogenes have been identified on chromosomes 6 and 11. [provided by RefSeq, Dec 2014]

Allele List at MGI

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ace	T	G	11: 105,862,170 (GRCm39)	F241L	possibly damaging	Het
Alx1	A	G	10: 102,858,160 (GRCm39)	F180L	possibly damaging	Het
Apaf1	T	C	10: 90,895,481 (GRCm39)	D428G	probably damaging	Het
Arap2	G	T	5: 62,807,025 (GRCm39)		probably benign	Het
Arnt2	A	G	7: 83,914,832 (GRCm39)	Y511H	probably damaging	Het
Bmp7	A	T	2: 172,714,724 (GRCm39)	C362S	probably damaging	Het
Bpifb9a	A	G	2: 154,104,307 (GRCm39)	D250G	possibly damaging	Het
Ccnk	T	A	12: 108,155,343 (GRCm39)	L100H	probably damaging	Het
Cdh23	T	C	10: 60,301,322 (GRCm39)	I451V	probably damaging	Het
Cemip	A	G	7: 83,613,192 (GRCm39)		probably null	Het
Cep78	T	A	19: 15,951,779 (GRCm39)	Q342L	probably benign	Het
Clca3b	T	C	3: 144,547,167 (GRCm39)		probably benign	Het
Cpb2	A	G	14: 75,520,844 (GRCm39)	R420G	possibly damaging	Het
Cyp2c50	A	T	19: 40,079,387 (GRCm39)		probably null	Het
Dbnl	T	C	11: 5,749,997 (GRCm39)	*433R	probably null	Het
Elovl5	T	C	9: 77,887,181 (GRCm39)	S191P	possibly damaging	Het
Fbxo42	A	G	4: 140,895,157 (GRCm39)	E40G	probably benign	Het
Fpgt	T	C	3: 154,793,499 (GRCm39)	D176G	possibly damaging	Het
Gm1110	C	A	9: 26,824,583 (GRCm39)		probably null	Het
Grik4	A	T	9: 42,453,284 (GRCm39)	S700R	probably damaging	Het
Herc4	T	C	10: 63,099,939 (GRCm39)	S121P	probably benign	Het
Hps4	T	C	5: 112,517,402 (GRCm39)	V263A	probably benign	Het
Hsd11b1	A	C	1: 192,922,924 (GRCm39)	L81R	probably damaging	Het
Ift122	T	C	6: 115,864,285 (GRCm39)	M310T	probably damaging	Het
Klf3	A	G	5: 64,986,415 (GRCm39)	K111E	probably damaging	Het
Kxd1	T	C	8: 70,968,090 (GRCm39)	T128A	probably benign	Het
Lgals7	A	G	7: 28,565,143 (GRCm39)	T94A	probably benign	Het
Lrp5	T	C	19: 3,641,816 (GRCm39)	H1382R	possibly damaging	Het
Muc6	T	C	7: 141,226,726 (GRCm39)	T1434A	possibly damaging	Het
Mybl2	C	T	2: 162,916,605 (GRCm39)	R419W	probably damaging	Het
Myo5b	A	T	18: 74,771,111 (GRCm39)		probably null	Het
Myo7a	A	G	7: 97,702,389 (GRCm39)	V2138A	possibly damaging	Het
Naip1	T	A	13: 100,563,304 (GRCm39)	K620N	probably benign	Het
Ntrk2	T	C	13: 58,994,670 (GRCm39)		probably null	Het
Or8g21	A	G	9: 38,906,402 (GRCm39)	S110P	probably damaging	Het
Osbpl5	A	G	7: 143,263,532 (GRCm39)	V105A	probably benign	Het
Pfkp	A	C	13: 6,647,996 (GRCm39)	F527V	probably benign	Het
Pilra	C	A	5: 137,833,917 (GRCm39)	G47*	probably null	Het
Pkdrej	C	A	15: 85,705,528 (GRCm39)	C136F	probably damaging	Het
Ppp1r16a	T	A	15: 76,575,200 (GRCm39)	M36K	probably benign	Het
Rita1	C	T	5: 120,747,858 (GRCm39)	A147T	probably damaging	Het
Rnf40	T	C	7: 127,188,999 (GRCm39)	V124A	probably benign	Het
St7l	A	G	3: 104,833,904 (GRCm39)	T522A	probably damaging	Het
Stox2	G	A	8: 47,644,979 (GRCm39)	P891L	probably damaging	Het
Trbv12-1	T	C	6: 41,090,972 (GRCm39)	S115P	probably damaging	Het
Trpm1	A	G	7: 63,884,800 (GRCm39)	D827G	probably benign	Het
Ttll6	T	A	11: 96,026,573 (GRCm39)	M119K	probably damaging	Het
Ufl1	C	A	4: 25,251,971 (GRCm39)	C568F	probably damaging	Het
Usp29	A	T	7: 6,965,155 (GRCm39)	I333F	probably benign	Het
Vta1	G	A	10: 14,581,138 (GRCm39)	T23M	probably damaging	Het
Zswim8	A	G	14: 20,773,325 (GRCm39)	D1771G	probably damaging	Het

Other mutations in Isg20l2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01135:Isg20l2	APN	3	87,839,068 (GRCm39)	missense	probably damaging	0.99
FR4304:Isg20l2	UTSW	3	87,839,019 (GRCm39)	unclassified	probably benign
FR4340:Isg20l2	UTSW	3	87,839,019 (GRCm39)	nonsense	probably null
FR4449:Isg20l2	UTSW	3	87,839,020 (GRCm39)	unclassified	probably benign
FR4589:Isg20l2	UTSW	3	87,839,024 (GRCm39)	unclassified	probably benign
FR4976:Isg20l2	UTSW	3	87,839,022 (GRCm39)	nonsense	probably null
R0331:Isg20l2	UTSW	3	87,839,092 (GRCm39)	missense	probably damaging	1.00
R0465:Isg20l2	UTSW	3	87,838,987 (GRCm39)	missense	probably benign	0.01
R1398:Isg20l2	UTSW	3	87,846,061 (GRCm39)	missense	probably benign	0.34
R1679:Isg20l2	UTSW	3	87,839,392 (GRCm39)	missense	probably damaging	1.00
R3040:Isg20l2	UTSW	3	87,839,302 (GRCm39)	missense	probably benign
R4910:Isg20l2	UTSW	3	87,846,570 (GRCm39)	missense	probably damaging	1.00
R5015:Isg20l2	UTSW	3	87,839,288 (GRCm39)	missense	possibly damaging	0.52
R5247:Isg20l2	UTSW	3	87,838,920 (GRCm39)	missense	possibly damaging	0.71
R5591:Isg20l2	UTSW	3	87,837,731 (GRCm39)	unclassified	probably benign
R6261:Isg20l2	UTSW	3	87,839,395 (GRCm39)	missense	probably damaging	1.00
R6755:Isg20l2	UTSW	3	87,838,996 (GRCm39)	missense	probably benign	0.21
R7459:Isg20l2	UTSW	3	87,839,485 (GRCm39)	missense	possibly damaging	0.76
R9036:Isg20l2	UTSW	3	87,839,302 (GRCm39)	missense	probably benign
R9284:Isg20l2	UTSW	3	87,838,991 (GRCm39)	missense	probably benign	0.02

Posted On

2015-04-16